Strain identifier
BacDive ID: 6285
Type strain:
Species: Terrabacter tumescens
Strain history: CIP <- 1986, IAM <- CCM, Corynebacterium tumescens <- Microbiol. Res. Inst., Ottawa, Canada
NCBI tax ID(s): 60443 (species)
General
@ref: 8710
BacDive-ID: 6285
DSM-Number: 20308
keywords: genome sequence, 16S sequence, Bacteria, obligate aerobe, mesophilic
description: Terrabacter tumescens DSM 20308 is an obligate aerobe, mesophilic bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 60443
- Matching level: species
strain history
@ref | history |
---|---|
8710 | <- H.G. Schlegel <- K. Komagata <- ATCC <- NCTC <- H.L. Jensen (Corynebacterium tumescens) |
67770 | IAM 12345 <-- CCM 1655 <-- MRI. |
123686 | CIP <- 1986, IAM <- CCM, Corynebacterium tumescens <- Microbiol. Res. Inst., Ottawa, Canada |
doi: 10.13145/bacdive6285.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Intrasporangiaceae
- genus: Terrabacter
- species: Terrabacter tumescens
- full scientific name: Terrabacter tumescens (Jensen 1934) Collins et al. 1989
synonyms
@ref synonym 20215 Corynebacterium tumescens 20215 Arthrobacter tumescens 20215 Pimelobacter tumescens
@ref: 8710
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Intrasporangiaceae
genus: Terrabacter
species: Terrabacter tumescens
full scientific name: Terrabacter tumescens (Jensen 1934) Collins et al. 1989
type strain: yes
Morphology
cell morphology
@ref | motility | confidence | gram stain |
---|---|---|---|
69480 | no | 92.499 | |
69480 | 100 | positive | |
123686 | no | positive |
colony morphology
@ref | colony color | incubation period | medium used |
---|---|---|---|
18741 | Cream | 10-14 days | ISP 2 |
18741 | 10-14 days | ISP 3 | |
18741 | 10-14 days | ISP 4 | |
18741 | 10-14 days | ISP 5 | |
18741 | 10-14 days | ISP 6 | |
18741 | 10-14 days | ISP 7 | |
123686 |
multicellular morphology
@ref | forms multicellular complex | medium name |
---|---|---|
18741 | no | ISP 2 |
18741 | no | ISP 3 |
18741 | no | ISP 4 |
18741 | no | ISP 5 |
18741 | no | ISP 6 |
18741 | no | ISP 7 |
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
8710 | TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) | yes | https://mediadive.dsmz.de/medium/92 | Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water |
18741 | ISP 2 | yes | Name: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes | |
18741 | ISP 3 | yes | Name: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms: | |
18741 | ISP 4 | yes | Name: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml | |
18741 | ISP 5 | yes | Name: ISP 5 (5323) Composition L-Asparagine 1.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l Salt solution (see preparation) 1.0 ml/l Agar 20.0 g/l Preparation: Salt solution 1.0 g FeSO4 x 7 H2O 1.0 g MnCl2 x 4 H2O 1.0 g ZNSO4 x 7 H2O in 100 ml water Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.2 Usage: Maintenance and taxonomy Organisms: All Actinomycetes | |
18741 | ISP 6 | yes | Name: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes | |
18741 | ISP 7 | yes | Name: ISP 7 (5322) Composition Glycerol 15.0 g/l L-Tyrosine 0.5 g/l L-Asparagine 1.0 g/l K2HPO4 0.5 g/l NaCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Trace element solution 5343 1.0 ml/l Agar 20.0 Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.3 Usage: Production of melanoid pigments Organisms: All Actinomycetes | |
38977 | MEDIUM 3 - Columbia agar | yes | Columbia agar (39.000 g);distilled water (1000.000 ml) | |
8710 | TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) | yes | https://mediadive.dsmz.de/medium/535 | Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water |
123686 | CIP Medium 3 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3 | |
123686 | CIP Medium 72 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
8710 | positive | growth | 28 | mesophilic |
38977 | positive | growth | 25 | mesophilic |
67770 | positive | growth | 30 | mesophilic |
123686 | positive | growth | 15-37 | |
123686 | no | growth | 10 | psychrophilic |
123686 | no | growth | 41 | thermophilic |
123686 | no | growth | 45 | thermophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 123686
- oxygen tolerance: obligate aerobe
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 95 |
69480 | no | 98.809 |
compound production
- @ref: 8710
- compound: 6 aminopenicillanic acid
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
18741 | NaCl | positive | maximum | 5 % |
123686 | NaCl | positive | growth | 2 % |
123686 | NaCl | no | growth | 0 % |
123686 | NaCl | no | growth | 4 % |
123686 | NaCl | no | growth | 6 % |
123686 | NaCl | no | growth | 8 % |
123686 | NaCl | no | growth | 10 % |
murein
- @ref: 8710
- murein short key: A41.02
- type: A3gamma LL-Dpm-Gly3; alpha-carboxyl group of D-Glu substituted by Gly
observation
@ref | observation |
---|---|
20216 | Deacylation of benzyl- and phenoxymethyl penicillin tetrazoles |
67770 | quinones: MK-8(H4) |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
18741 | 62968 | cellulose | - | |
18741 | 16634 | raffinose | + | |
18741 | 26546 | rhamnose | + | |
18741 | 28757 | fructose | + | |
18741 | 29864 | mannitol | + | |
18741 | 17268 | myo-inositol | + | |
18741 | 18222 | xylose | + | |
18741 | 17992 | sucrose | + | |
18741 | 22599 | arabinose | + | |
18741 | 17234 | glucose | + | |
68371 | Potassium 2-ketogluconate | - | builds acid from | |
68371 | 18403 | L-arabitol | - | builds acid from |
68371 | 18287 | L-fucose | - | builds acid from |
68371 | 28847 | D-fucose | - | builds acid from |
68371 | 16443 | D-tagatose | - | builds acid from |
68371 | 17151 | xylitol | - | builds acid from |
68371 | 6731 | melezitose | - | builds acid from |
68371 | 15443 | inulin | - | builds acid from |
68371 | 17814 | salicin | - | builds acid from |
68371 | 4853 | esculin | + | builds acid from |
68371 | 18305 | arbutin | + | builds acid from |
68371 | 59640 | N-acetylglucosamine | - | builds acid from |
68371 | 320061 | methyl alpha-D-glucopyranoside | - | builds acid from |
68371 | 43943 | methyl alpha-D-mannoside | - | builds acid from |
68371 | 17268 | myo-inositol | - | builds acid from |
68371 | 16813 | galactitol | - | builds acid from |
68371 | 62345 | L-rhamnose | - | builds acid from |
68371 | 17266 | L-sorbose | - | builds acid from |
68371 | 74863 | methyl beta-D-xylopyranoside | - | builds acid from |
68371 | 15963 | ribitol | - | builds acid from |
68371 | 65328 | L-xylose | - | builds acid from |
68371 | 16988 | D-ribose | - | builds acid from |
68371 | 17108 | D-arabinose | - | builds acid from |
68371 | 17113 | erythritol | - | builds acid from |
68368 | 5291 | gelatin | + | hydrolysis |
68368 | 27897 | tryptophan | - | energy source |
68368 | 16199 | urea | - | hydrolysis |
68368 | 16947 | citrate | - | assimilation |
68368 | 18257 | ornithine | - | degradation |
68368 | 25094 | lysine | - | degradation |
68368 | 29016 | arginine | - | hydrolysis |
123686 | 16947 | citrate | - | carbon source |
123686 | 4853 | esculin | + | hydrolysis |
123686 | 606565 | hippurate | - | hydrolysis |
123686 | 17632 | nitrate | + | reduction |
123686 | 16301 | nitrite | - | reduction |
123686 | 17632 | nitrate | - | respiration |
68379 | 17632 | nitrate | - | reduction |
68379 | 4853 | esculin | + | hydrolysis |
68379 | 16199 | urea | - | hydrolysis |
68379 | 5291 | gelatin | + | hydrolysis |
68379 | 17634 | D-glucose | - | fermentation |
68379 | 16988 | D-ribose | - | fermentation |
68379 | 65327 | D-xylose | - | fermentation |
68379 | 16899 | D-mannitol | - | fermentation |
68379 | 17306 | maltose | - | fermentation |
68379 | 17716 | lactose | - | fermentation |
68379 | 17992 | sucrose | + | fermentation |
68379 | 28087 | glycogen | - | fermentation |
antibiotic resistance
- @ref: 123686
- metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
- is antibiotic: yes
- is sensitive: no
- is resistant: yes
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
68368 | 15688 | acetoin | yes |
68368 | 35581 | indole | no |
68368 | 16136 | hydrogen sulfide | no |
123686 | 35581 | indole | no |
metabolite tests
@ref | Chebi-ID | metabolite | voges-proskauer-test | indole test | methylred-test |
---|---|---|---|---|---|
68368 | 15688 | acetoin | + | ||
68368 | 35581 | indole | - | ||
123686 | 15688 | acetoin | - | ||
123686 | 17234 | glucose | - |
enzymes
@ref | value | activity | ec |
---|---|---|---|
68382 | alpha-fucosidase | - | 3.2.1.51 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | alpha-glucosidase | + | 3.2.1.20 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | beta-galactosidase | + | 3.2.1.23 |
68382 | alpha-galactosidase | + | 3.2.1.22 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | lipase (C 14) | - | |
68382 | esterase lipase (C 8) | + | |
68379 | gelatinase | + | |
68379 | urease | - | 3.5.1.5 |
68379 | beta-glucosidase | + | 3.2.1.21 |
68379 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68379 | alpha-glucosidase | + | 3.2.1.20 |
68379 | beta-galactosidase | + | 3.2.1.23 |
68379 | beta-glucuronidase | - | 3.2.1.31 |
68379 | alkaline phosphatase | + | 3.1.3.1 |
68379 | pyrrolidonyl arylamidase | - | 3.4.19.3 |
68379 | pyrazinamidase | - | 3.5.1.B15 |
68368 | gelatinase | + | |
68368 | tryptophan deaminase | - | 4.1.99.1 |
68368 | urease | - | 3.5.1.5 |
68368 | ornithine decarboxylase | - | 4.1.1.17 |
68368 | lysine decarboxylase | - | 4.1.1.18 |
68368 | arginine dihydrolase | - | 3.5.3.6 |
68368 | beta-galactosidase | - | 3.2.1.23 |
123686 | oxidase | - | |
123686 | beta-galactosidase | + | 3.2.1.23 |
123686 | alcohol dehydrogenase | - | 1.1.1.1 |
123686 | gelatinase | - | |
123686 | amylase | + | |
123686 | DNase | + | |
123686 | caseinase | - | 3.4.21.50 |
123686 | catalase | + | 1.11.1.6 |
123686 | tween esterase | - | |
123686 | gamma-glutamyltransferase | + | 2.3.2.2 |
123686 | lecithinase | - | |
123686 | lipase | - | |
123686 | lysine decarboxylase | - | 4.1.1.18 |
123686 | ornithine decarboxylase | - | 4.1.1.17 |
123686 | phenylalanine ammonia-lyase | - | 4.3.1.24 |
123686 | protease | - | |
123686 | tryptophan deaminase | - | |
123686 | urease | - | 3.5.1.5 |
API coryne
@ref | NIT | PYZ | PYRA | PAL | beta GUR | beta GAL | alpha GLU | beta NAG | ESC | URE | GEL | GLU | RIB | XYL | MAN | MAL | LAC | SAC | GLYG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
18741 | - | - | - | + | - | + | + | - | + | - | + | - | - | - | - | - | - | + | - |
API zym
@ref | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase | Control |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
18741 | + | - | + | - | + | + | + | + | - | + | + | + | + | - | + | + | - | - | - | |
123686 | - | + | + | - | + | - | - | - | - | + | + | + | + | - | + | - | - | - | - | - |
API 20E
@ref | ONPG | ADH Arg | LDC Lys | ODC | CIT | H2S | URE | TDA Trp | IND | VP | GEL |
---|---|---|---|---|---|---|---|---|---|---|---|
18741 | - | - | - | - | - | - | - | - | - | + | + |
API 50CHac
@ref | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
123686 | +/- | - | - | +/- | - | +/- | - | - | - | +/- | +/- | +/- | +/- | - | - | - | - | +/- | +/- | - | - | - | +/- | + | + | - | +/- | +/- | +/- | +/- | +/- | +/- | - | - | +/- | +/- | +/- | - | +/- | +/- | +/- | - | - | - | +/- | - | +/- | - | +/- |
API biotype100
@ref | GLU | FRU | GAL | TRE | MNE | SBE | MEL | SAC | RAF | MTE | MAL | LAC | LTE | MbGa | MaGa | CEL | GEN | MbGu | ESC | RIB | ARA | XYL | PLE | RHA | FUC | MLZ | DARL | LARL | XLT | DUL | TAG | GLY | INO | MAN | MTL | TUR | SOR | ADO | HBG | LYX | ERY | MDG | 3MDG | SAT | MUC | LTAT | DTAT | MTAT | DMLT | LMLT | CATE | TATE | TTE | CIT | GRT | GAT | 2KG | 5KG | TRY | NAG | GNT | PAC | PAT | pOBE | QAT | GTE | mOBE | BAT | PPAT | CMT | TGE | BET | PCE | ABT | HIN | LAT | CAP | CYT | HIS | SUC | FUM | GRE | GYT | AVT | ETN | TTN | GLN | ITA | 3OBU | APT | GTT | PRO | DALA | LALA | SER | MNT | PROP | TYR | 2KT |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
123686 | + | + | + | + | + | - | + | + | + | + | + | + | + | + | + | + | - | - | + | - | + | + | + | - | - | - | + | - | - | - | - | + | + | + | + | + | + | + | + | + | - | - | - | - | - | - | - | - | + | + | - | - | - | - | - | - | - | - | - | + | + | - | - | - | - | + | + | - | - | - | - | - | - | + | + | + | - | - | + | + | + | - | - | - | - | - | + | - | + | + | + | + | + | + | + | + | + | + | - |
Isolation, sampling and environmental information
isolation
@ref | sample type |
---|---|
8710 | soil |
47861 | Garden soil |
67770 | Garden soil |
123686 | Environment, Garden soil |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
taxonmaps
- @ref: 69479
- File name: preview.99_5002.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_2431;97_2983;98_3738;99_5002&stattab=map
- Last taxonomy: Terrabacter
- 16S sequence: X83812
- Sequence Identity:
- Total samples: 4549
- soil counts: 2840
- aquatic counts: 491
- animal counts: 1084
- plant counts: 134
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
18741 | 1 | Risk group (German classification) |
8710 | 1 | Risk group (German classification) |
123686 | 1 | Risk group (French classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | T.tumescens 16S rRNA gene | X83812 | 1461 | ena | 60443 |
20218 | Terrabacter tumescens 16S ribosomal RNA gene, partial sequence | AF005023 | 1477 | ena | 60443 |
20218 | Terrabacter tumescens strain KCTC 9133 16S-23S internal transcribed spacer, complete sequence | AF017510 | 386 | ena | 60443 |
20218 | Terrebacter tumescens partial 16S rRNA | X53215 | 1399 | ena | 60443 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Terrabacter tumescens JCM 1365 | GCA_014646815 | scaffold | ncbi | 60443 |
66792 | Terrabacter tumescens strain JCM 1365 | 60443.3 | wgs | patric | 60443 |
GC content
@ref | GC-content | method |
---|---|---|
8710 | 69.8 | |
67770 | 75.2 | thermal denaturation, midpoint method (Tm) |
67770 | 74.7 | |
67770 | 69.8 | thermal denaturation, midpoint method (Tm) |
67770 | 72.4 | |
67770 | 71.3 | thermal denaturation, midpoint method (Tm) |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 95 | no |
flagellated | no | 98.642 | no |
gram-positive | yes | 89.575 | no |
anaerobic | no | 98.966 | no |
aerobic | yes | 94.373 | no |
halophile | no | 90.713 | no |
spore-forming | no | 75.765 | no |
thermophile | no | 99.325 | yes |
glucose-util | yes | 86.39 | no |
motile | no | 94.124 | no |
glucose-ferment | no | 93.022 | yes |
External links
@ref: 8710
culture collection no.: DSM 20308, ATCC 6947, CCM 1655, IMET 10431, NCIB 8914, NCTC 4216, CCUG 23850, LMG 3818, CCTM La2715, CIP 102515, JCM 1365, BCRC 17052, CCUG 23928, CGMCC 1.2032, IAM 12345, IAM 14295, IFO 12960, IMSNU 21313, KCTC 9133, NBRC 12960, NCDO 1574, NCIMB 8914, NRIC 0156, NRRL B-4012, VKM Ac-1120, VKM B-669
straininfo link
- @ref: 75760
- straininfo: 88258
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 17766880 | Terrabacter aerolatus sp. nov., isolated from an air sample. | Weon HY, Schumann P, Kroppenstedt RM, Kim BY, Song J, Kwon SW, Go SJ, Stackebrandt E | Int J Syst Evol Microbiol | 10.1099/ijs.0.65040-0 | 2007 | Actinomycetales/*classification/genetics/*isolation & purification/physiology, Aerobiosis/physiology, *Air Microbiology, Bacterial Typing Techniques, Base Composition, Carbohydrates/analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Genes, rRNA, Hydrogen-Ion Concentration, Korea, Locomotion/physiology, Molecular Sequence Data, Mycolic Acids/analysis, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/analysis, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Temperature, Vitamin K 2/analysis | Genetics |
Phylogeny | 18319451 | Sanguibacter soli sp. nov., isolated from soil of a ginseng field. | Kim MK, Pulla RK, Kim SY, Yi TH, Soung NK, Yang DC | Int J Syst Evol Microbiol | 10.1099/ijs.0.65399-0 | 2008 | Actinomycetales/classification/genetics/*isolation & purification/physiology, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Fatty Acids/analysis, Genes, rRNA, Korea, Molecular Sequence Data, Panax/*growth & development, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Species Specificity | Genetics |
Phylogeny | 18450693 | Terrabacter lapilli sp. nov., an actinomycete isolated from stone. | Lee JE, Seo JP, Lee DW, Ko YH, Lee SD | Int J Syst Evol Microbiol | 10.1099/ijs.0.65541-0 | 2008 | Actinomycetales/chemistry/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/analysis/isolation & purification, Fatty Acids/analysis, Genes, rRNA, Genotype, Geologic Sediments/*microbiology, Korea, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Species Specificity | Genetics |
Phylogeny | 25006219 | Terrabacter koreensis sp. nov., isolated from soil of a flowerbed. | Won K, Kook M, Yi TH | Int J Syst Evol Microbiol | 10.1099/ijs.0.063313-0 | 2014 | Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistry | Genetics |
Phylogeny | 29721830 | Terrabacter ginsengisoli sp. nov., isolated from ginseng cultivating soil. | Jin MF, Quan XT, Siddiqi MZ, Liu QZ, Yu HS, Im WT | J Microbiol | 10.1007/s12275-018-8098-z | 2018 | Actinobacteria/*classification/genetics/*isolation & purification/physiology, Bacterial Typing Techniques, Base Composition, Cardiolipins/analysis, DNA, Bacterial/genetics, Fatty Acids/analysis, Genotype, Hydrogen-Ion Concentration, Nucleic Acid Hybridization, Panax/*microbiology, Phenotype, Phosphatidylethanolamines/analysis, Phosphatidylglycerols/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Soil, *Soil Microbiology, Species Specificity | Genetics |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
8710 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20308) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-20308 | |||
18741 | Wink, J. | http://www.dsmz.de/microorganisms/wink_pdf/DSM20308.pdf | Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20216 | Curators of the HKI | http://www.leibniz-hki.de/de/ | Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
38977 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/14210 | ||||
47861 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 23850) | https://www.ccug.se/strain?id=23850 | |||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
68368 | Automatically annotated from API 20E | |||||
68371 | Automatically annotated from API 50CH acid | |||||
68379 | Automatically annotated from API Coryne | |||||
68382 | Automatically annotated from API zym | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
75760 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID88258.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
123686 | Curators of the CIP | Collection of Institut Pasteur (CIP 102515) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20102515 |