Strain identifier
BacDive ID: 5157
Type strain:
Species: Serratia proteamaculans
Strain Designation: 3630
Strain history: CIP <- 1988, P.A.D. Grimont, Inst. Pasteur, Paris, France: strain 3630
NCBI tax ID(s): 28151 (species)
General
@ref: 1724
BacDive-ID: 5157
DSM-Number: 4543
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, rod-shaped, animal pathogen
description: Serratia proteamaculans 3630 is an aerobe, mesophilic, Gram-negative animal pathogen of the family Yersiniaceae.
NCBI tax id
- NCBI tax id: 28151
- Matching level: species
strain history
@ref | history |
---|---|
1724 | <- ATCC <- NCPPB (Xanthomonas proteamaculans) <- NCTC <- S. Paine |
41131 | 1988, P.A.D. Grimont, Inst. Pasteur, Paris, France: strain 3630 |
121967 | CIP <- 1988, P.A.D. Grimont, Inst. Pasteur, Paris, France: strain 3630 |
doi: 10.13145/bacdive5157.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Enterobacterales
- family: Yersiniaceae
- genus: Serratia
- species: Serratia proteamaculans
- full scientific name: Serratia proteamaculans (Paine and Stansfield 1919) Grimont et al. 1978 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Pseudomonas proteamaculans
@ref: 1724
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Enterobacteriales, not validated
family: Yersiniaceae
genus: Serratia
species: Serratia proteamaculans subsp. proteamaculans
full scientific name: Serratia proteamaculans subsp. proteamaculans (Paine and Stansfield 1919) Grimont et al. 1983
strain designation: 3630
type strain: yes
Morphology
cell morphology
- @ref: 121967
- gram stain: negative
- cell shape: rod-shaped
- motility: no
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
1724 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | yes | https://mediadive.dsmz.de/medium/693 | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base |
1724 | TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) | yes | https://mediadive.dsmz.de/medium/92 | Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water |
41131 | MEDIUM 3 - Columbia agar | yes | Columbia agar (39.000 g);distilled water (1000.000 ml) | |
121967 | CIP Medium 72 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72 | |
121967 | CIP Medium 3 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
1724 | positive | growth | 30 | mesophilic |
41131 | positive | growth | 30 | mesophilic |
46122 | positive | growth | 30 | mesophilic |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
46122 | aerobe |
121967 | facultative anaerobe |
metabolite utilization
@ref | metabolite | utilization activity | kind of utilization tested | Chebi-ID |
---|---|---|---|---|
68371 | Potassium 5-ketogluconate | + | builds acid from | |
68371 | Potassium 2-ketogluconate | + | builds acid from | |
68371 | gluconate | + | builds acid from | 24265 |
68371 | L-arabitol | - | builds acid from | 18403 |
68371 | D-arabitol | - | builds acid from | 18333 |
68371 | L-fucose | - | builds acid from | 18287 |
68371 | D-fucose | - | builds acid from | 28847 |
68371 | D-tagatose | - | builds acid from | 16443 |
68371 | D-lyxose | - | builds acid from | 62318 |
68371 | turanose | + | builds acid from | 32528 |
68371 | xylitol | - | builds acid from | 17151 |
68371 | glycogen | - | builds acid from | 28087 |
68371 | raffinose | + | builds acid from | 16634 |
68371 | melezitose | + | builds acid from | 6731 |
68371 | inulin | - | builds acid from | 15443 |
68371 | trehalose | + | builds acid from | 27082 |
68371 | sucrose | + | builds acid from | 17992 |
68371 | melibiose | + | builds acid from | 28053 |
68371 | maltose | + | builds acid from | 17306 |
68371 | salicin | + | builds acid from | 17814 |
68371 | esculin | + | builds acid from | 4853 |
68371 | arbutin | + | builds acid from | 18305 |
68371 | amygdalin | - | builds acid from | 27613 |
68371 | N-acetylglucosamine | + | builds acid from | 59640 |
68371 | methyl alpha-D-glucopyranoside | + | builds acid from | 320061 |
68371 | methyl alpha-D-mannoside | - | builds acid from | 43943 |
68371 | D-sorbitol | + | builds acid from | 17924 |
68371 | D-mannitol | + | builds acid from | 16899 |
68371 | myo-inositol | + | builds acid from | 17268 |
68371 | galactitol | - | builds acid from | 16813 |
68371 | L-rhamnose | - | builds acid from | 62345 |
68371 | L-sorbose | - | builds acid from | 17266 |
68371 | D-mannose | + | builds acid from | 16024 |
68371 | D-fructose | + | builds acid from | 15824 |
68371 | D-glucose | + | builds acid from | 17634 |
68371 | D-galactose | + | builds acid from | 12936 |
68371 | methyl beta-D-xylopyranoside | - | builds acid from | 74863 |
68371 | ribitol | - | builds acid from | 15963 |
68371 | L-xylose | - | builds acid from | 65328 |
68371 | D-xylose | + | builds acid from | 65327 |
68371 | D-ribose | + | builds acid from | 16988 |
68371 | L-arabinose | + | builds acid from | 30849 |
68371 | D-arabinose | - | builds acid from | 17108 |
68371 | erythritol | - | builds acid from | 17113 |
68371 | glycerol | + | builds acid from | 17754 |
68368 | L-arabinose | + | fermentation | 30849 |
68368 | amygdalin | + | fermentation | 27613 |
68368 | sucrose | + | fermentation | 17992 |
68368 | L-rhamnose | - | fermentation | 62345 |
68368 | myo-inositol | + | fermentation | 17268 |
68368 | D-mannitol | + | fermentation | 16899 |
68368 | D-glucose | + | fermentation | 17634 |
68368 | tryptophan | - | energy source | 27897 |
68368 | urea | - | hydrolysis | 16199 |
68368 | citrate | + | assimilation | 16947 |
68368 | ornithine | + | degradation | 18257 |
68368 | arginine | - | hydrolysis | 29016 |
121967 | nitrate | + | reduction | 17632 |
121967 | nitrite | - | reduction | 16301 |
68374 | ornithine | + | degradation | 18257 |
68374 | arginine | - | hydrolysis | 29016 |
68374 | lysine | - | degradation | 25094 |
68374 | urea | - | hydrolysis | 16199 |
68374 | L-arabitol | - | builds acid from | 18403 |
68374 | D-galacturonic acid | - | builds acid from | 18024 |
68374 | Potassium 5-ketogluconate | + | builds acid from | |
68374 | D-mannitol | + | builds acid from | 16899 |
68374 | maltose | - | builds acid from | 17306 |
68374 | ribitol | - | builds acid from | 15963 |
68374 | palatinose | - | builds acid from | 18394 |
68374 | malonate | - | assimilation | 15792 |
68374 | tryptophan | - | energy source | 27897 |
68374 | D-glucose | + | builds acid from | 17634 |
68374 | sucrose | + | builds acid from | 17992 |
68374 | L-arabinose | + | builds acid from | 30849 |
68374 | D-arabitol | - | builds acid from | 18333 |
68374 | trehalose | + | builds acid from | 27082 |
68374 | L-rhamnose | - | builds acid from | 62345 |
68374 | myo-inositol | + | builds acid from | 17268 |
68374 | cellobiose | - | builds acid from | 17057 |
68374 | sorbitol | - | builds acid from | 30911 |
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
68374 | 35581 | indole | no |
68368 | 15688 | acetoin | yes |
68368 | 35581 | indole | no |
68368 | 16136 | hydrogen sulfide | no |
121967 | 35581 | indole | no |
metabolite tests
@ref | Chebi-ID | metabolite | indole test | voges-proskauer-test |
---|---|---|---|---|
68374 | 35581 | indole | - | |
68368 | 15688 | acetoin | + | |
68368 | 35581 | indole | - |
enzymes
@ref | value | activity | ec |
---|---|---|---|
68382 | alpha-fucosidase | - | 3.2.1.51 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 |
68382 | alpha-glucosidase | + | 3.2.1.20 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | beta-galactosidase | + | 3.2.1.23 |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | lipase (C 14) | - | |
68382 | esterase lipase (C 8) | - | |
68382 | alkaline phosphatase | + | 3.1.3.1 |
68374 | L-aspartate arylamidase | - | 3.4.11.21 |
68374 | alpha-maltosidase | - | |
68374 | alpha-galactosidase | + | 3.2.1.22 |
68374 | alpha-glucosidase | - | 3.2.1.20 |
68374 | beta-galactosidase | + | 3.2.1.23 |
68374 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68374 | beta-glucuronidase | - | 3.2.1.31 |
68374 | beta-glucosidase | + | 3.2.1.21 |
68374 | lipase | - | |
68374 | urease | - | 3.5.1.5 |
68374 | lysine decarboxylase | - | 4.1.1.18 |
68374 | arginine dihydrolase | - | 3.5.3.6 |
68374 | ornithine decarboxylase | + | 4.1.1.17 |
68368 | cytochrome oxidase | - | 1.9.3.1 |
68368 | tryptophan deaminase | - | 4.1.99.1 |
68368 | urease | - | 3.5.1.5 |
68368 | ornithine decarboxylase | + | 4.1.1.17 |
68368 | arginine dihydrolase | - | 3.5.3.6 |
68368 | beta-galactosidase | + | 3.2.1.23 |
121967 | oxidase | - | |
121967 | catalase | + | 1.11.1.6 |
121967 | urease | - | 3.5.1.5 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
46122 | - | + | - | - | - | + | - | - | - | - | + | + | - | + | - | + | - | + | - | - |
121967 | - | + | + | - | - | + | + | - | + | - | + | + | - | + | - | + | + | + | - | - |
API 20E
@ref | ONPG | ADH Arg | LDC Lys | ODC | CIT | H2S | URE | TDA Trp | IND | VP | GEL | GLU | MAN | INO | Sor | RHA | SAC | MEL | AMY | ARA | OX |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1724 | + | - | +/- | + | + | - | - | - | - | + | + | + | + | + | + | - | + | + | + | + | - |
46122 | + | - | + | + | + | - | - | - | - | + | - | + | + | + | - | - | + | - | + | + | - |
API 50CHac
@ref | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
121967 | + | - | - | + | + | + | - | - | - | + | + | + | + | - | - | - | + | + | + | - | + | + | - | + | + | + | +/- | + | +/- | + | + | + | - | + | + | +/- | - | - | +/- | + | - | - | - | - | - | - | + | + | + |
API ID32E
@ref | ODC | ADH Arg | LDC Lys | URE | LARL | GAT | 5KG | LIP | RP | beta GLU | MAN | MAL | ADO | PLE | beta GUR | MNT | IND | beta NAG | beta GAL | GLU | SAC | LARA | DARL | alpha GLU | alpha GAL | TRE | RHA | INO | CEL | SOR | alphaMAL | AspA |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
46122 | + | - | - | - | - | - | + | - | + | + | + | - | - | - | - | - | - | - | + | + | + | + | - | - | + | + | - | + | - | - | - | - |
Isolation, sampling and environmental information
taxonmaps
- @ref: 69479
- File name: preview.99_1313.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_6;96_106;97_324;98_1038;99_1313&stattab=map
- Last taxonomy: Serratia
- 16S sequence: AJ233434
- Sequence Identity:
- Total samples: 32155
- soil counts: 4695
- aquatic counts: 7179
- animal counts: 15622
- plant counts: 4659
Safety information
risk assessment
@ref | pathogenicity animal | biosafety level | biosafety level comment |
---|---|---|---|
1724 | yes | 2 | Risk group (German classification) |
121967 | 1 | Risk group (French classification) |
Sequence information
16S sequences
- @ref: 1724
- description: Serratia proteamaculans 16S rRNA gene (strain DSM 4543)
- accession: AJ233434
- length: 1502
- database: ena
- NCBI tax ID: 28151
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Serratia proteamaculans CCUG 14510 | GCA_008830365 | contig | ncbi | 28151 |
66792 | Serratia proteamaculans strain CCUG 14510 | 28151.36 | wgs | patric | 28151 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
motile | yes | 91.067 | no |
gram-positive | no | 98.065 | no |
anaerobic | no | 98.176 | yes |
halophile | no | 92.116 | no |
spore-forming | no | 95.838 | no |
glucose-util | yes | 95.29 | no |
flagellated | no | 54.691 | no |
aerobic | yes | 89.781 | yes |
thermophile | no | 99.54 | yes |
glucose-ferment | yes | 93.183 | yes |
External links
@ref: 1724
culture collection no.: DSM 4543, ATCC 19323, NCPPB 245, NCTC 394, CCUG 14510, CIP 103236, ICPB XP176
straininfo link
- @ref: 74649
- straininfo: 92711
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
1724 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 4543) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-4543 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
41131 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/15011 | ||
46122 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 14510) | https://www.ccug.se/strain?id=14510 | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
68368 | Automatically annotated from API 20E | |||
68371 | Automatically annotated from API 50CH acid | |||
68374 | Automatically annotated from API ID32E | |||
68382 | Automatically annotated from API zym | |||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
74649 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID92711.1 | StrainInfo: A central database for resolving microbial strain identifiers | |
121967 | Curators of the CIP | Collection of Institut Pasteur (CIP 103236) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103236 |