Strain identifier
BacDive ID: 3043
Type strain:
Species: Fannyhessea vaginae
Strain history: CIP <- 2000, CCUG <- I. Mattsby, Göteborg, Sweden
NCBI tax ID(s): 525256 (strain), 82135 (species)
General
@ref: 6041
BacDive-ID: 3043
DSM-Number: 15829
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, Gram-positive, coccus-shaped
description: Fannyhessea vaginae DSM 15829 is an anaerobe, mesophilic, Gram-positive bacterium that was isolated from human vaginal flora, healthy person.
NCBI tax id
NCBI tax id | Matching level |
---|---|
525256 | strain |
82135 | species |
strain history
@ref | history |
---|---|
6041 | <- CCUG <- I. Mattsby |
67771 | <- CCUG <- I Mattsby |
123775 | CIP <- 2000, CCUG <- I. Mattsby, Göteborg, Sweden |
doi: 10.13145/bacdive3043.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Coriobacteriia
- order: Coriobacteriales
- family: Atopobiaceae
- genus: Fannyhessea
- species: Fannyhessea vaginae
- full scientific name: Fannyhessea vaginae (Rodriguez Jovita et al. 1999) Nouioui et al. 2018
synonyms
- @ref: 20215
- synonym: Atopobium vaginae
@ref: 6041
domain: Bacteria
phylum: Actinobacteria
class: Coriobacteriia
order: Coriobacteriales
family: Atopobiaceae
genus: Fannyhessea
species: Fannyhessea vaginae
full scientific name: Fannyhessea vaginae (Rodriguez Jovita et al. 1999) Nouioui et al. 2018
type strain: yes
Morphology
cell morphology
@ref | gram stain | cell length | cell shape | motility |
---|---|---|---|---|
23097 | positive | 0.6-0.9 µm | coccus-shaped | no |
67771 | coccus-shaped | |||
67771 | positive | |||
123775 | positive | rod-shaped | no |
colony morphology
- @ref: 123775
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
6041 | CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110) | yes | https://mediadive.dsmz.de/medium/110 | Name: CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l K2HPO4 5.0 g/l Yeast extract 5.0 g/l D-Glucose 4.0 g/l Starch 1.0 g/l Maltose 1.0 g/l Cellobiose 1.0 g/l L-Cysteine HCl 0.5 g/l Ethanol 0.19 g/l Vitamin K3 0.05 g/l Hemin 0.005 g/l Sodium resazurin 0.0005 g/l Vitamin K1 NaOH Distilled water |
6041 | CHOCOLATE AGAR (DSMZ Medium 429b) | yes | https://mediadive.dsmz.de/medium/429b | Name: CHOCOLATE AGAR (DSMZ Medium 429b) Composition: Horse blood 100.0 g/l Sheep blood 100.0 g/l Columbia agar base |
23097 | Columbia CNA agar (Difco) | yes | supplemented with 5% horse blood | |
36590 | MEDIUM 6 - Columbia agar with 10 % horse blood | yes | Distilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml) | |
6041 | PYG MEDIUM (MODIFIED) (DSMZ Medium 104) | yes | https://mediadive.dsmz.de/medium/104 | Name: PYG MEDIUM (modified) (DSMZ Medium 104) Composition: Yeast extract 10.0 g/l Peptone 5.0 g/l Trypticase peptone 5.0 g/l Beef extract 5.0 g/l Glucose 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l K2HPO4 0.04 g/l KH2PO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Hemin 0.005 g/l Ethanol 0.0038 g/l Resazurin 0.001 g/l Tween 80 Vitamin K1 NaOH Distilled water |
123775 | CIP Medium 6 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=6 | |
123775 | CIP Medium 6-Boites-Biorad | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=6-Boites-Biorad |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
6041 | positive | growth | 37 | mesophilic |
36590 | positive | growth | 37 | mesophilic |
54577 | positive | growth | 37 | mesophilic |
67771 | positive | growth | 37 | mesophilic |
123775 | positive | growth | 30-37 | mesophilic |
123775 | no | growth | 10 | psychrophilic |
123775 | no | growth | 25 | mesophilic |
123775 | no | growth | 41 | thermophilic |
123775 | no | growth | 45 | thermophilic |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
6041 | anaerobe |
23097 | facultative anaerobe |
54577 | anaerobe |
67771 | anaerobe |
123775 | anaerobe |
halophily
- @ref: 123775
- salt: NaCl
- growth: no
- tested relation: growth
- concentration: 6.5 %
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
23097 | 37684 | mannose | - | builds acid from |
23097 | 16634 | raffinose | - | builds acid from |
23097 | 4853 | esculin | - | hydrolysis |
23097 | 5291 | gelatin | - | hydrolysis |
23097 | 17632 | nitrate | - | reduction |
123775 | 4853 | esculin | - | hydrolysis |
123775 | 606565 | hippurate | - | hydrolysis |
123775 | 17632 | nitrate | - | reduction |
123775 | 16301 | nitrite | - | reduction |
68380 | 16199 | urea | - | hydrolysis |
68380 | 16634 | raffinose | - | fermentation |
68380 | 29985 | L-glutamate | - | degradation |
68380 | 17632 | nitrate | - | reduction |
68380 | 27897 | tryptophan | - | energy source |
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
23097 | 35581 | indole | no |
68380 | 35581 | indole | no |
metabolite tests
@ref | Chebi-ID | metabolite | indole test | voges-proskauer-test |
---|---|---|---|---|
68380 | 35581 | indole | - | |
123775 | 15688 | acetoin | - |
enzymes
@ref | value | activity | ec |
---|---|---|---|
23097 | 6-phospho-beta-galactosidase | - | 3.2.1.85 |
23097 | acid phosphatase | + | 3.1.3.2 |
23097 | alanine arylamidase | - | 3.4.11.2 |
23097 | alpha-arabinosidase | - | 3.2.1.55 |
23097 | alpha-chymotrypsin | - | 3.4.21.1 |
23097 | alpha-fucosidase | - | 3.2.1.51 |
23097 | alpha-galactosidase | - | 3.2.1.22 |
23097 | alpha-glucosidase | - | 3.2.1.20 |
23097 | alpha-mannosidase | - | 3.2.1.24 |
23097 | arginine arylamidase | + | |
23097 | arginine dihydrolase | + | 3.5.3.6 |
23097 | beta-galactosidase | - | 3.2.1.23 |
23097 | beta-glucosidase | - | 3.2.1.21 |
23097 | beta-glucuronidase | - | 3.2.1.31 |
23097 | cystine arylamidase | - | 3.4.11.3 |
23097 | esterase (C 4) | - | |
23097 | esterase lipase (C 8) | - | |
23097 | glutamate decarboxylase | - | 4.1.1.15 |
23097 | glutamyl-glutamate arylamidase | - | |
23097 | glycin arylamidase | + | |
23097 | histidine arylamidase | + | |
23097 | leucine arylamidase | + | 3.4.11.1 |
23097 | lipase (C 14) | - | |
23097 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
23097 | phenylalanine arylamidase | + | |
23097 | proline-arylamidase | + | 3.4.11.5 |
23097 | pyroglutamic acid arylamidase | - | |
23097 | serine arylamidase | + | |
23097 | trypsin | - | 3.4.21.4 |
23097 | tyrosine arylamidase | - | |
23097 | urease | - | 3.5.1.5 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | trypsin | - | 3.4.21.4 |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | valine arylamidase | - | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | lipase (C 14) | - | |
68382 | esterase (C 4) | + | |
68382 | alkaline phosphatase | - | 3.1.3.1 |
68380 | glutamyl-glutamate arylamidase | - | |
68380 | pyrrolidonyl arylamidase | - | 3.4.19.3 |
68380 | proline-arylamidase | + | 3.4.11.5 |
68380 | L-arginine arylamidase | + | |
68380 | tryptophan deaminase | - | 4.1.99.1 |
68380 | alpha-fucosidase | - | 3.2.1.51 |
68380 | glutamate decarboxylase | - | 4.1.1.15 |
68380 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68380 | beta-glucuronidase | - | 3.2.1.31 |
68380 | alpha-arabinosidase | - | 3.2.1.55 |
68380 | beta-glucosidase | - | 3.2.1.21 |
68380 | alpha-glucosidase | - | 3.2.1.20 |
68380 | beta-Galactosidase 6-phosphate | - | |
68380 | beta-galactosidase | - | 3.2.1.23 |
68380 | alpha-galactosidase | - | 3.2.1.22 |
68380 | urease | - | 3.5.1.5 |
123775 | oxidase | - | |
123775 | beta-galactosidase | - | 3.2.1.23 |
123775 | alcohol dehydrogenase | - | 1.1.1.1 |
123775 | catalase | + | 1.11.1.6 |
123775 | gamma-glutamyltransferase | - | 2.3.2.2 |
123775 | lysine decarboxylase | - | 4.1.1.18 |
123775 | ornithine decarboxylase | - | 4.1.1.17 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
54577 | - | - | + | - | - | + | - | - | - | - | + | + | - | - | - | - | - | - | - | - |
123775 | - | - | + | + | - | + | - | - | - | - | + | + | - | - | - | + | - | - | - | - |
API rID32A
@ref | URE | ADH Arg | alpha GAL | beta GAL | beta GP | alpha GLU | beta GLU | alpha ARA | beta GUR | beta NAG | MNE | RAF | GDC | alpha FUC | NIT | IND | PAL | ArgA | ProA | LGA | PheA | LeuA | PyrA | TyrA | AlaA | GlyA | HisA | GGA | SerA |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
6041 | - | + | - | - | - | - | - | - | - | - | + | - | - | - | - | - | - | + | + | +/- | +/- | + | - | + | - | + | + | - | +/- |
6041 | - | - | - | - | - | - | - | - | - | - | +/- | - | - | - | - | - | - | + | + | - | - | +/- | - | - | - | - | - | - | - |
6041 | - | +/- | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | + | +/- | +/- | + | - | +/- | - | +/- | +/- | - | - |
6041 | - | + | - | - | - | - | - | - | - | - | + | - | - | - | - | - | - | + | + | - | - | + | - | - | - | - | - | - | - |
54577 | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | + | + | + | + | + | - | + | + | + | + | - | + |
6041 | - | + | - | - | - | - | - | - | - | - | + | - | - | - | - | - | - | + | + | + | + | + | - | + | + | + | + | - | + |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent | latitude | longitude | sampling date | isolation date |
---|---|---|---|---|---|---|---|---|---|
6041 | human vaginal flora, healthy person | Göteborg | Sweden | SWE | Europe | 57.7089 | 11.9746 | ||
54577 | Human vaginal flora,healthy person | Göteborg | Sweden | SWE | Europe | 1998-01-01 | |||
67771 | From human vaginal flora, healthy person | Goteborg | Sweden | SWE | Europe | ||||
123775 | Human, Vaginal flora | Göteborg | Sweden | SWE | Europe | 1998 |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Human | |
#Host Body-Site | #Urogenital tract | #Vagina |
taxonmaps
- @ref: 69479
- File name: preview.99_5327.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_150;96_2578;97_3159;98_3970;99_5327&stattab=map
- Last taxonomy: Fannyhessea vaginae
- 16S sequence: Y17195
- Sequence Identity:
- Total samples: 48424
- soil counts: 1353
- aquatic counts: 1960
- animal counts: 44584
- plant counts: 527
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
6041 | 2 | Risk group (German classification) |
123775 | 1 | Risk group (French classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Atopobium vaginae DSM 15829 16S ribosomal RNA gene, partial sequence | HM007563 | 1331 | ena | 525256 |
6041 | Atopobium sp. strain CCUG 38953 16S ribosomal RNA | Y17195 | 1351 | ena | 525256 |
67771 | Atopobium vaginae DSM 15829 contig00003, whole genome shotgun sequence | ACGK01000003 | 5211 | ena | 525256 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Fannyhessea vaginae DSM 15829 | GCA_000159235 | contig | ncbi | 525256 |
66792 | Fannyhessea vaginae DSM 15829 | GCA_000178335 | scaffold | ncbi | 525256 |
66792 | Atopobium vaginae DSM 15829 | 525256.4 | wgs | patric | 525256 |
66792 | Atopobium vaginae DSM 15829 (Prj:53885) | 525256.5 | wgs | patric | 525256 |
66792 | Fannyhessea vaginae strain FDAARGOS_934 | 82135.84 | complete | patric | 82135 |
66792 | Fannyhessea vaginae DSM 15829 | 648276620 | complete | img | 525256 |
66792 | Fannyhessea vaginae DSM 15829 | 2562617091 | draft | img | 525256 |
GC content
@ref | GC-content | method |
---|---|---|
6041 | 44 | |
67771 | 44.0 | thermal denaturation, midpoint method (Tm) |
External links
@ref: 6041
culture collection no.: DSM 15829, ATCC BAA 55, CCUG 38953, CIP 106431, KCTC 15240
straininfo link
- @ref: 72563
- straininfo: 44274
literature
- topic: Phylogeny
- Pubmed-ID: 10555338
- title: Characterization of a novel Atopobium isolate from the human vagina: description of Atopobium vaginae sp. nov.
- authors: Rodriguez Jovita M, Collins MD, Sjoden B, Falsen E
- journal: Int J Syst Bacteriol
- DOI: 10.1099/00207713-49-4-1573
- year: 1999
- mesh: Actinobacteria/*classification/*genetics/isolation & purification/physiology, Bacterial Typing Techniques, Female, Genes, rRNA, Humans, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vagina/*microbiology
- topic2: Pathogenicity
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
6041 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15829) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-15829 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
23097 | Mar Rodriguez Jovita,Matthew D. Collins,Berit Sjödén,Enevold Falsen | 10.1099/00207713-49-4-1573 | Characterization of a novel Atopobium isolate from the human vagina: description of Atopobium vaginae sp. nov. | IJSEM 49: 1573-1576 1999 | 10555338 | |
36590 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/18561 | ||||
54577 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 38953) | https://www.ccug.se/strain?id=38953 | |||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | ||||
68380 | Automatically annotated from API rID32A | |||||
68382 | Automatically annotated from API zym | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
72563 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID44274.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
123775 | Curators of the CIP | Collection of Institut Pasteur (CIP 106431) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20106431 |