Strain identifier

BacDive ID: 263

Type strain: Yes

Species: Aeromonas tecta

Strain Designation: F518

Strain history: CIP <- 2014, DSMZ <- A. Demarta, Cantonal Inst. Microbiol., Bellinzona, Switzerland: strain F518

NCBI tax ID(s): 324617 (species)

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General

@ref: 6882

BacDive-ID: 263

DSM-Number: 17300

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, motile, human pathogen

description: Aeromonas tecta F518 is a mesophilic, motile human pathogen that was isolated from stool of a child with diarrhoea.

NCBI tax id

  • NCBI tax id: 324617
  • Matching level: species

strain history

@refhistory
6882<- A. Demarta, Cantonal Insititute of Microbiology, Bellinzona; F518
123437CIP <- 2014, DSMZ <- A. Demarta, Cantonal Inst. Microbiol., Bellinzona, Switzerland: strain F518

doi: 10.13145/bacdive263.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Aeromonadales
  • family: Aeromonadaceae
  • genus: Aeromonas
  • species: Aeromonas tecta
  • full scientific name: Aeromonas tecta Demarta et al. 2010

@ref: 6882

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Aeromonadales

family: Aeromonadaceae

genus: Aeromonas

species: Aeromonas tecta

full scientific name: Aeromonas tecta Demarta et al. 2010

strain designation: F518

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480yes98.616
6948099.992negative
123437yesnegativerod-shaped

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
6882COLUMBIA BLOOD AGAR (DSMZ Medium 429)yeshttps://mediadive.dsmz.de/medium/429Name: COLUMBIA BLOOD AGAR (DSMZ Medium 429) Composition: Horse blood 40.0 g/l Columbia agar base
6882CASO AGAR (MERCK 105458) (DSMZ Medium 220)yeshttps://mediadive.dsmz.de/medium/220Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
36286TCS-Biorad-Tubesyes
123437CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
6882positivegrowth30mesophilic
36286positivegrowth30mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481no100
69480no99.779

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate-assimilation
6836927689decanoate+assimilation
6836924265gluconate+assimilation
6836917306maltose+assimilation
6836959640N-acetylglucosamine+assimilation
6836916899D-mannitol+assimilation
6836916024D-mannose+assimilation
6836930849L-arabinose+assimilation
6836917634D-glucose+assimilation
683695291gelatin+hydrolysis
683694853esculin+hydrolysis
6836916199urea-hydrolysis
6836929016arginine+hydrolysis
6836917634D-glucose+fermentation
6836927897tryptophan+energy source
6836917632nitrate+reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: yes

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: +

enzymes

@refvalueactivityec
68369cytochrome oxidase+1.9.3.1
68369gelatinase+
68369beta-glucosidase+3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase+3.5.3.6

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
6882++++-+++++++++++-+--+

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
6882stool of a child with diarrhoeaCanton TicinoSwitzerlandCHEEurope
123437Human, StoolBellinzona, SwitzerlandSwitzerlandCHEEurope

isolation source categories

Cat1Cat2Cat3
#Infection#Patient
#Host Body Product#Gastrointestinal tract#Feces (Stool)
#Host#Human#Child

Safety information

risk assessment

@refpathogenicity humanpathogenicity animalbiosafety levelbiosafety level comment
6882yes, in single casesyes, in single cases1Risk group (German classification)
1234371Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Aeromonas tecta strain CECT7082 16S ribosomal RNA gene, partial sequenceHQ8324161503ena324617
20218Aeromonas tecta strain CECT 7082 16S ribosomal RNA gene, partial sequenceJX014445151ena324617
6882Aeromonas tecta partial 16S rRNA gene, strain F518AJ4584021354ena324617

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Aeromonas tecta CECT 7082GCA_000820185scaffoldncbi324617
66792Aeromonas tecta CECT 7082324617.3wgspatric324617
66792Aeromonas tecta CECT 70822645727543draftimg324617

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes90.539no
motileyes90.539no
flagellatedyes89.821no
flagellatedyes89.821no
gram-positiveno98.876no
gram-positiveno98.876no
anaerobicno97.798no
anaerobicno97.798no
aerobicyes90.168no
aerobicyes90.168no
halophileno90.834no
halophileno90.834no
spore-formingno96.32no
spore-formingno96.32no
glucose-utilyes91.463yes
glucose-utilyes91.463yes
thermophileno99.569yes
thermophileno99.569yes
glucose-fermentyes89.301yes
glucose-fermentyes89.301yes

External links

@ref: 6882

culture collection no.: DSM 17300, CECT 7082, MDC 91, CIP 110807

straininfo link

  • @ref: 69945
  • straininfo: 302331

literature

  • topic: Phylogeny
  • Pubmed-ID: 18617346
  • title: Aeromonas tecta sp. nov., isolated from clinical and environmental sources.
  • authors: Demarta A, Kupfer M, Riegel P, Harf-Monteil C, Tonolla M, Peduzzi R, Monera A, Jose Saavedra M, Martinez-Murcia A
  • journal: Syst Appl Microbiol
  • DOI: 10.1016/j.syapm.2008.04.005
  • year: 2008
  • mesh: Adult, Aeromonas/*classification/drug effects/genetics/*isolation & purification, Animals, Anti-Bacterial Agents/pharmacology, Bacterial Proteins/genetics, Child, DNA Gyrase/genetics, DNA-Directed RNA Polymerases/genetics, Environmental Microbiology, Feces/microbiology, Glycerol/metabolism, Humans, Microbial Sensitivity Tests, Oncorhynchus mykiss/microbiology, Phylogeny, RNA, Ribosomal, 16S/genetics, Sigma Factor/genetics, Species Specificity
  • topic2: Pathogenicity

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
6882Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17300)https://www.dsmz.de/collection/catalogue/details/culture/DSM-17300
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
36286Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/30620
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68369Automatically annotated from API 20NE
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
69945Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID302331.1StrainInfo: A central database for resolving microbial strain identifiers
123437Curators of the CIPCollection of Institut Pasteur (CIP 110807)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110807