Strain identifier

BacDive ID: 1990

Type strain: Yes

Species: Burkholderia lata

Strain Designation: 383, 61

Strain history: CIP <- 2014, CCUG <- 2007, LMG <- 2004, T. Coenye, Gent, Belgium <- 2002, T. Lessie, Massachusetts, USA <- A. Hayward: strain 61

NCBI tax ID(s): 482957 (species)

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General

@ref: 16574

BacDive-ID: 1990

DSM-Number: 23089

keywords: genome sequence, Bacteria, aerobe, mesophilic, Gram-negative, rod-shaped, pigmented

description: Burkholderia lata 383 is an aerobe, mesophilic, Gram-negative bacterium that has a yellow or yellow-purple pigmentation and was isolated from forest soil.

NCBI tax id

  • NCBI tax id: 482957
  • Matching level: species

strain history

@refhistory
16574<- CCUG <- E. Vanlaere, LMG <- T. Coenye, Ghent, Belgium <- T. Lessie, Massachusetts, USA <- A. Hayward
120566CIP <- 2014, CCUG <- 2007, LMG <- 2004, T. Coenye, Gent, Belgium <- 2002, T. Lessie, Massachusetts, USA <- A. Hayward: strain 61

doi: 10.13145/bacdive1990.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Burkholderiaceae
  • genus: Burkholderia
  • species: Burkholderia lata
  • full scientific name: Burkholderia lata Vanlaere et al. 2009

@ref: 16574

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Burkholderiaceae

genus: Burkholderia

species: Burkholderia lata

full scientific name: Burkholderia lata Vanlaere et al. 2009

strain designation: 383, 61

type strain: yes

Morphology

cell morphology

@refgram staincell shapeconfidencemotility
23366negativerod-shaped
69480negative99.996
120566negativerod-shapedno

colony morphology

  • @ref: 16574
  • type of hemolysis: gamma

pigmentation

  • @ref: 23366
  • production: yes
  • color: yellow or yellow-purple

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
16574R2A MEDIUM (DSMZ Medium 830)yeshttps://mediadive.dsmz.de/medium/830Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
120566CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
16574positivegrowth30mesophilic
23366positivegrowth30-37mesophilic
23366nogrowth42thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 23366
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
23366no
69481no100
69480no99.99

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2336617128adipate+assimilation
2336616947citrate+assimilation
233668391D-gluconate+assimilation
2336617634D-glucose+assimilation
2336616899D-mannitol+assimilation
2336616024D-mannose+assimilation
2336615589L-malate+assimilation
23366506227N-acetylglucosamine+assimilation
2336617634D-glucose+builds acid from
2336617716lactose+builds acid from
2336617306maltose+builds acid from
2336618222xylose+builds acid from
2336627689decanoate+/-assimilation
2336630849L-arabinose+/-assimilation
2336617306maltose+/-assimilation
2336618401phenylacetate+/-assimilation
2336615963ribitol+/-builds acid from
2336617992sucrose+/-builds acid from
233664853esculin+/-hydrolysis
2336617632nitrate+/-reduction
6836925115malate+assimilation
6836917128adipate+assimilation
6836927689decanoate+assimilation
6836924265gluconate+assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine+assimilation
6836916899D-mannitol+assimilation
6836916024D-mannose+assimilation
6836930849L-arabinose+assimilation
6836917634D-glucose+assimilation
683695291gelatin+hydrolysis
683694853esculin+hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
16574catalase+1.11.1.6
16574cytochrome-c oxidase+1.9.3.1
68369cytochrome oxidase+1.9.3.1
68369gelatinase+
68369beta-glucosidase+3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
16574-----++-+++++-+++++++
16574-----++-+++++-+++++++

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentsampling dategeographic locationisolation date
16574forest soilTrinidad and TobagoTTOMiddle and South America
233661958
120566Environment, Soil, forestTrinidad and TobagoTTONorth AmericaTrinidad and Tobago1958

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Forest
#Environmental#Terrestrial#Soil

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
165741Risk group (German classification)
1205661Risk group (French classification)

Sequence information

Genome sequences

  • @ref: 66792
  • description: Burkholderia lata 383
  • accession: GCA_000012945
  • assembly level: complete
  • database: ncbi
  • NCBI tax ID: 482957

GC content

@refGC-contentmethod
1657467.0high performance liquid chromatography (HPLC)
2336667.0

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes86.367no
flagellatedno80.136no
gram-positiveno98.45yes
anaerobicno97.915yes
halophileno91.316no
spore-formingno94.049yes
thermophileno99.702no
glucose-utilyes92.618yes
aerobicyes88.511yes
glucose-fermentno83.012no

External links

@ref: 16574

culture collection no.: DSM 23089, ATCC 17760, CCUG 55525, LMG 22485, CIP 110773, CCUG 5856, LMG 6991, NCIB 9086

straininfo link

  • @ref: 71637
  • straininfo: 3972

literature

  • topic: Phylogeny
  • Pubmed-ID: 19126732
  • title: Taxon K, a complex within the Burkholderia cepacia complex, comprises at least two novel species, Burkholderia contaminans sp. nov. and Burkholderia lata sp. nov.
  • authors: Vanlaere E, Baldwin A, Gevers D, Henry D, De Brandt E, LiPuma JJ, Mahenthiralingam E, Speert DP, Dowson C, Vandamme P
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.001123-0
  • year: 2009
  • mesh: Animals, Bacterial Typing Techniques, Base Composition, Burkholderia Infections/microbiology/veterinary, Burkholderia cepacia complex/*classification/genetics/*isolation & purification/physiology, Cystic Fibrosis/*microbiology, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Female, Genome, Bacterial, Humans, Mastitis/microbiology/*veterinary, Nucleic Acid Hybridization, Phylogeny, Polymorphism, Restriction Fragment Length, RNA, Ribosomal, 16S/genetics, Rec A Recombinases/genetics, Sequence Analysis, DNA, Sheep, Sheep Diseases/*microbiology, Species Specificity
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
16574Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23089)https://www.dsmz.de/collection/catalogue/details/culture/DSM-23089
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
23366Elke Vanlaere, Adam Baldwin, Dirk Gevers, Deborah Henry, Evie De Brandt, John J. LiPuma, Eshwar Mahenthiralingam, David P. Speert, Chris Dowson, Peter Vandamme10.1099/ijs.0.001123-0Taxon K, a complex within the Burkholderia cepacia complex, comprises at least two novel species, Burkholderia contaminans sp. nov. and Burkholderia lata sp. nov.IJSEM 59: 102-111 200919126732
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68369Automatically annotated from API 20NE
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
71637Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID3972.1StrainInfo: A central database for resolving microbial strain identifiers
120566Curators of the CIPCollection of Institut Pasteur (CIP 110773)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110773