Strain identifier
BacDive ID: 18023
Type strain:
Species: Caldicellulosiruptor acetigenus
Strain Designation: X6B
Strain history: <- B. Ahring, X6B
NCBI tax ID(s): 1121259 (strain), 301953 (species)
General
@ref: 2957
BacDive-ID: 18023
DSM-Number: 7040
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, thermophilic, Gram-positive
description: Caldicellulosiruptor acetigenus X6B is an anaerobe, thermophilic, Gram-positive bacterium that was isolated from hot spring.
NCBI tax id
NCBI tax id | Matching level |
---|---|
1121259 | strain |
301953 | species |
strain history
- @ref: 2957
- history: <- B. Ahring, X6B
doi: 10.13145/bacdive18023.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Syntrophomonadaceae
- genus: Caldicellulosiruptor
- species: Caldicellulosiruptor acetigenus
- full scientific name: Caldicellulosiruptor acetigenus (Nielsen et al. 1994) Onyenwoke et al. 2006
synonyms
@ref synonym 20215 Caldicellulosiruptor kristjanssonii 20215 Caldicellulosiruptor lactoaceticus 20215 Thermoanaerobium acetigenum
@ref: 2957
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Clostridia, not assigned to family
genus: Caldicellulosiruptor
species: Caldicellulosiruptor acetigenus
full scientific name: Caldicellulosiruptor acetigenus (Nielsen et al. 1994) Onyenwoke et al. 2006
strain designation: X6B
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: positive
- confidence: 99.999
Culture and growth conditions
culture medium
- @ref: 2957
- name: CALDICELLULOSIRUPTOR ACETIGENUS MEDIUM (DSMZ Medium 144a)
- growth: yes
- link: https://mediadive.dsmz.de/medium/144a
- composition: Name: CALDICELLULOSIRUPTOR ACETIGENUS MEDIUM (DSMZ Medium 144a) Composition: D-Glucose 5.0 g/l K2HPO4 1.5 g/l Na2S x 9 H2O 1.0 g/l Yeast extract 1.0 g/l NH4Cl 0.9 g/l KH2PO4 0.75 g/l MgCl2 x 6 H2O 0.4 g/l Nitrilotriacetic acid 0.1152 g/l NaCl 0.009 g/l FeSO4 x 7 H2O 0.003 g/l FeCl2 x 4 H2O 0.0018 g/l CoCl2 x 6 H2O 0.00153 g/l MnCl2 x 4 H2O 0.0009 g/l CaCl2 x 2 H2O 0.0009 g/l ZnCl2 0.0009 g/l Sodium resazurin 0.0005 g/l NiCl2 x 6 H2O 0.00027 g/l Na2SeO3 x 5 H2O 0.00027 g/l CuCl2 0.00018 g/l H3BO3 9e-05 g/l Na2MoO4 x 2 H2O 9e-05 g/l Pyridoxine hydrochloride 5e-05 g/l p-Aminobenzoic acid 2.5e-05 g/l (DL)-alpha-Lipoic acid 2.5e-05 g/l Nicotinic acid 2.5e-05 g/l Riboflavin 2.5e-05 g/l Thiamine HCl 2.5e-05 g/l Calcium D-(+)-pantothenate 2.5e-05 g/l Biotin 1e-05 g/l Folic acid 1e-05 g/l Vitamin B12 5e-07 g/l Distilled water
culture temp
@ref | growth | type | temperature | range | confidence |
---|---|---|---|---|---|
2957 | positive | growth | 70 | thermophilic | |
69480 | thermophilic | 100 |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance | confidence |
---|---|---|
2957 | anaerobe | |
69480 | anaerobe | 99.999 |
Isolation, sampling and environmental information
isolation
- @ref: 2957
- sample type: hot spring
- country: Iceland
- origin.country: ISL
- continent: Europe
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Aquatic | #Thermal spring |
#Condition | #Thermophilic (>45°C) |
Safety information
risk assessment
- @ref: 2957
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
2957 | Caldicellulosiruptor acetigenus clone 2 16S ribosomal RNA gene, partial sequence | AY772477 | 1413 | ena | 301953 |
2957 | Caldicellulosiruptor acetigenus clone 1 16S ribosomal RNA gene, partial sequence | AY772476 | 1421 | ena | 301953 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Caldicellulosiruptor acetigenus DSM 7040 | GCA_000421725 | contig | ncbi | 1121259 |
66792 | Caldicellulosiruptor acetigenus DSM 7040 | 1121259.3 | wgs | patric | 1121259 |
66792 | Caldicellulosiruptor acetigenus DSM 7040 | 2524614853 | draft | img | 1121259 |
GC content
- @ref: 2957
- GC-content: 35.7
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | yes | 68 | no |
motile | yes | 84.79 | no |
flagellated | no | 83.989 | no |
gram-positive | yes | 81.938 | no |
anaerobic | yes | 99.209 | no |
aerobic | no | 98.547 | yes |
halophile | no | 98.117 | no |
spore-forming | no | 59.694 | no |
thermophile | yes | 100 | no |
glucose-util | yes | 89.508 | no |
glucose-ferment | no | 55.743 | no |
External links
@ref: 2957
culture collection no.: DSM 7040, ATCC BAA 1149
straininfo link
- @ref: 87012
- straininfo: 48349
literature
- topic: Phylogeny
- Pubmed-ID: 16738119
- title: Reclassification of Thermoanaerobium acetigenum as Caldicellulosiruptor acetigenus comb. nov. and emendation of the genus description.
- authors: Onyenwoke RU, Lee YJ, Dabrowski S, Ahring BK, Wiegel J
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.63723-0
- year: 2006
- mesh: Clostridium/*classification/genetics/growth & development, Molecular Sequence Data, *Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Reproducibility of Results, Terminology as Topic, Thermoanaerobacterium/*classification/genetics/growth & development
- topic2: Genetics
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
2957 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 7040) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-7040 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
87012 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID48349.1 | StrainInfo: A central database for resolving microbial strain identifiers |