Strain identifier

BacDive ID: 17319

Type strain: Yes

Species: Vibrio campbellii

Strain history: CIP <- 1975, M. Popoff, Inst. Pasteur, Paris, France <- J.L. Reichelt <- P. Baumann: strain 40, Beneckea campbellii

NCBI tax ID(s): 1224742 (strain), 680 (species)

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General

@ref: 7989

BacDive-ID: 17319

DSM-Number: 19270

keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, mesophilic, motile

description: Vibrio campbellii DSM 19270 is a facultative anaerobe, mesophilic, motile bacterium that was isolated from seawater at 800 m depth.

NCBI tax id

NCBI tax idMatching level
680species
1224742strain

strain history

@refhistory
7989<- CCM <- P. Baumann; 40
67770R. Sakazaki <-- ATCC 25920 <-- P. Baumann 40.
117113CIP <- 1975, M. Popoff, Inst. Pasteur, Paris, France <- J.L. Reichelt <- P. Baumann: strain 40, Beneckea campbellii

doi: 10.13145/bacdive17319.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Vibrionales
  • family: Vibrionaceae
  • genus: Vibrio
  • species: Vibrio campbellii
  • full scientific name: Vibrio campbellii (Baumann et al. 1971) Baumann et al. 1981

  • synonyms

    • @ref: 20215
    • synonym: Beneckea campbellii

@ref: 7989

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Vibrionales, not validated

family: Vibrionaceae

genus: Vibrio

species: Vibrio campbellii

full scientific name: Vibrio campbellii (Baumann et al. 1971) Baumann et al. 1981

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480yes96.445
6948099.971negative
117113yesnegativerod-shaped

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
7989BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)yeshttps://mediadive.dsmz.de/medium/514Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
37619Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)
117113CIP Medium 13yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13

culture temp

@refgrowthtypetemperaturerange
7989positivegrowth28mesophilic
37619positivegrowth25mesophilic
67770positivegrowth26mesophilic
117113positivegrowth15-37
117113nogrowth5psychrophilic
117113nogrowth41thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 117113
  • oxygen tolerance: facultative anaerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.831

halophily

@refsaltgrowthtested relationconcentration
117113NaClpositivegrowth2-8 %
117113NaClnogrowth0 %
117113NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate-assimilation
6836927689decanoate+assimilation
6836924265gluconate-assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose-assimilation
683695291gelatin+hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose+fermentation
6836927897tryptophan+energy source
6836917632nitrate+reduction
6836830849L-arabinose-fermentation
6836827613amygdalin+fermentation
6836828053melibiose-fermentation
6836817992sucrose-fermentation
6836862345L-rhamnose-fermentation
6836830911sorbitol-fermentation
6836817268myo-inositol-fermentation
6836816899D-mannitol+fermentation
6836817634D-glucose+fermentation
683685291gelatin+hydrolysis
6836827897tryptophan+energy source
6836816199urea-hydrolysis
6836816947citrate-assimilation
6836818257ornithine-degradation
6836825094lysine-degradation
6836829016arginine-hydrolysis
11711316947citrate-carbon source
1171134853esculin-hydrolysis
11711317234glucose+fermentation
11711317716lactose+fermentation
11711317632nitrate+reduction
11711316301nitrite-reduction
117113132112sodium thiosulfate-builds gas from

antibiotic resistance

  • @ref: 117113
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: yes
  • is resistant: no

metabolite production

@refChebi-IDmetaboliteproduction
6836935581indoleyes
6836815688acetoinno
6836835581indoleyes
6836816136hydrogen sulfideno
11711335581indoleno

metabolite tests

@refChebi-IDmetaboliteindole testvoges-proskauer-testmethylred-test
6836935581indole+
6836815688acetoin-
6836835581indole+
11711315688acetoin-
11711317234glucose+

enzymes

@refvalueactivityec
68369cytochrome oxidase+1.9.3.1
68369gelatinase+
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6
68368cytochrome oxidase+1.9.3.1
68368gelatinase+
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase-3.2.1.23
117113oxidase+
117113beta-galactosidase-3.2.1.23
117113alcohol dehydrogenase-1.1.1.1
117113gelatinase+/-
117113amylase+
117113DNase+
117113caseinase+3.4.21.50
117113catalase+1.11.1.6
117113tween esterase+
117113gamma-glutamyltransferase-2.3.2.2
117113lecithinase+
117113lipase+
117113lysine decarboxylase+4.1.1.18
117113ornithine decarboxylase-4.1.1.17
117113phenylalanine ammonia-lyase-4.3.1.24
117113protease+
117113tryptophan deaminase-
117113urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin+3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
117113-+++-+---+++--------

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
7989--------+-+++-----+-+

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
7989+++---+--------+-++-+

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
117113++-++----++----+---+-----------+-+---------------++--+----++---------------+--+++-+---+--++++++--+-

Isolation, sampling and environmental information

isolation

@refsample typelatitudelongitude
7989seawater at 800 m depth20.5157.5
44819Marine origin
67770Seawater
117113Environment, Seawater at 800m. deep

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Marine

taxonmaps

  • @ref: 69479
  • File name: preview.99_89.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_14;96_71;97_74;98_81;99_89&stattab=map
  • Last taxonomy: Vibrio
  • 16S sequence: X74692
  • Sequence Identity:
  • Total samples: 5164
  • soil counts: 169
  • aquatic counts: 3075
  • animal counts: 1856
  • plant counts: 64

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
79891Risk group (German classification)
1171132Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Vibrio campbellii strain ATCC 25920 16S-23S ribosomal RNA intergenic spacer, partial sequenceAF412990279ena1224742
20218Vibrio campbellii strain ATCC 25920 16S-23S ribosomal RNA intergenic spacer, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequenceAF412996544ena1224742
20218Vibrio campbellii strain ATCC 25920 16S-23S ribosomal RNA intergenic spacer, partial sequenceAF412997278ena1224742
20218Vibrio campbellii ATCC 25920 16S ribosomal RNA gene, partial sequenceAF426824745ena1224742
20218Vibrio campbellii 16S rRNAD11193217ena1224742
20218Vibrio campbellii 16S rRNAD11242213ena1224742
20218Vibrio campbellii 16S rRNAD11291194ena680
20218V.campbelli (ATCC 25920T) gene for 16S ribosomal RNAX746921467ena1224742
7989V.campbellii 16S ribosomal RNAX565751485ena1224742
67770Vibrio campbellii gene for 16S rRNA, partial sequence, strain: NBRC 15631AB6809171478ena680
67770Vibrio campbellii gene for 16S ribosomal RNA, partial cds, strain: JCM 1054LC0501731475ena680

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Vibrio campbellii ATCC BAA-1116 ATCC BAA-1116; BB120GCA_000017705completencbi2902295
66792Vibrio campbellii ATCC BAA-1116GCA_000464435completencbi2902295
66792Vibrio campbellii CAIM 519 = NBRC 15631 = ATCC 25920 ATCC 25920, CAIM 519TGCA_002163755completencbi1224742
66792Vibrio campbellii CAIM 519 = NBRC 156311224742.7wgspatric1224742
66792Vibrio campbellii CAIM 519 = NBRC 156311224742.3wgspatric1224742
66792Vibrio campbellii CAIM 519 = NBRC 15631 strain ATCC 25920, CAIM 519T1224742.10completepatric1224742
66792Vibrio campbellii CAIM 519 = NBRC 15631 strain ATCC 25920, CAIM 519T1224742.13plasmidpatric1224742
66792Vibrio campbellii ATCC 259202875345634completeimg680
66792Vibrio campbellii CAIM 5192537561638draftimg1224742
66792Vibrio campbellii CAIM 5192579778813draftimg1224742
67770Vibrio campbellii CAIM 519 = NBRC 15631 = ATCC 25920GCA_000334195contigncbi1224742
67770Vibrio campbellii CAIM 519 = NBRC 15631 = ATCC 25920GCA_000400345scaffoldncbi1224742

GC content

@refGC-contentmethod
798944.94sequence analysis
6777047.2

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes90.339no
flagellatedyes85.176no
gram-positiveno98.563no
anaerobicno97.602no
aerobicyes83.062no
halophileno52.801no
spore-formingno92.787no
thermophileno99.729yes
glucose-utilyes87.604yes
glucose-fermentyes86.826yes

External links

@ref: 7989

culture collection no.: DSM 19270, ATCC 25920, CCM 2582, CCUG 4979, CECT 523, CIP 75.1, LMG 11216, NBRC 15631, NCIMB 1894, NCTC 11317, JCM 1054, BCRC 12909, CAIM 315, CAIM 519, IFO 15631, KCTC 2716, NCCB 73002, NCIMB 1994

straininfo link

  • @ref: 86319
  • straininfo: 5056

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Enzymology17310070Differential detection of vibrios pathogenic to shrimp by multiplex PCR.Castroverde CD, San Luis BB, Monsalud RG, Hedreyda CTJ Gen Appl Microbiol10.2323/jgam.52.2732006Animals, Bacterial Proteins/genetics, DNA-Binding Proteins/genetics, Decapoda/*virology, Polymerase Chain Reaction/*methods, Transcription Factors/genetics, Vibrio/*isolation & purificationPhylogeny
Enzymology17325443Analysis of a gene (vch) encoding hemolysin isolated and sequenced from Vibrio campbellii.San Luis BB, Hedreyda CTJ Gen Appl Microbiol10.2323/jgam.52.3032006Amino Acid Sequence, Chromosome Mapping, Cloning, Molecular, DNA, Bacterial/chemistry/genetics, Deoxyribonuclease HindIII/chemistry, *Genes, Bacterial, Hemolysin Proteins/chemistry/*genetics, Molecular Sequence Data, Sequence Alignment, Sequence Analysis, DNA, Vibrio/*geneticsGenetics
Phylogeny19605706Vibrio hangzhouensis sp. nov., isolated from sediment of the East China Sea.Xu XW, Wu YH, Wang CS, Oren A, Wu MInt J Syst Evol Microbiol10.1099/ijs.0.008698-02009Aerobiosis, Bacterial Typing Techniques, Base Composition, Catalase/metabolism, China, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Geologic Sediments/*microbiology, Locomotion, Microscopy, Electron, Molecular Sequence Data, Nucleic Acid Hybridization, Oxidoreductases/metabolism, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vibrio/*classification/genetics/*isolation & purification/physiologyMetabolism
Phylogeny20002183Vibrio owensii sp. nov., isolated from cultured crustaceans in Australia.Cano-Gomez A, Goulden EF, Owens L, Hoj LFEMS Microbiol Lett10.1111/j.1574-6968.2009.01850.x2009Animals, Bacterial Proteins/genetics, Bacterial Typing Techniques, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Palinuridae/*microbiology, Penaeidae/*microbiology, Phylogeny, Queensland, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vibrio/chemistry/*classification/genetics/*isolation & purificationGenetics
Phylogeny21057054Usefulness of a real-time PCR platform for G+C content and DNA-DNA hybridization estimations in vibrios.Moreira APB, Pereira N, Thompson FLInt J Syst Evol Microbiol10.1099/ijs.0.023606-02010Bacteriological Techniques/methods, Base Composition, Chromatography, High Pressure Liquid, DNA, Bacterial/*chemistry/*genetics, Nucleic Acid Hybridization, Real-Time Polymerase Chain Reaction/*methods, Transition Temperature, Vibrio/*classification/*genetics
Genetics23710045Taxonomic revision of Harveyi clade bacteria (family Vibrionaceae) based on analysis of whole genome sequences.Urbanczyk H, Ogura Y, Hayashi TInt J Syst Evol Microbiol10.1099/ijs.0.051110-02013Bacterial Typing Techniques, DNA, Bacterial/genetics, *Genome, Bacterial, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vibrio/*classification/geneticsPhylogeny
Phylogeny31622230Vibrio ouci sp. nov. and Vibrio aquaticus sp. nov., two marine bacteria isolated from the East China Sea.Li B, Li Y, Liu R, Xue C, Zhu X, Tian X, Wang X, Liang J, Zheng Y, Zhang XHInt J Syst Evol Microbiol10.1099/ijsem.0.0037322020Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Vibrio/*classification/isolation & purification, *Water MicrobiologyTranscriptome
Phylogeny31848285Diversity in Natural Transformation Frequencies and Regulation across Vibrio Species.Simpson CA, Podicheti R, Rusch DB, Dalia AB, van Kessel JCmBio10.1128/mBio.02788-192019Bacterial Proteins/genetics, DNA Transformation Competence/genetics, DNA, Bacterial, Gene Expression, *Gene Expression Regulation, Bacterial, Humans, Models, Biological, Phenotype, Phylogeny, Quorum Sensing, Trans-Activators/genetics, *Transformation, Bacterial, Vibrio/classification/*physiologyPathogenicity
Proteome35384695Proteome Expression and Survival Strategies of a Proteorhodopsin-Containing Vibrio Strain under Carbon and Nitrogen Limitation.Gallagher GE, Waldbauer JRmSystems10.1128/msystems.01263-212022

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
7989Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19270)https://www.dsmz.de/collection/catalogue/details/culture/DSM-19270
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
37619Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/10735
44819Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 4979)https://www.ccug.se/strain?id=4979
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68368Automatically annotated from API 20E
68369Automatically annotated from API 20NE
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
86319Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID5056.1StrainInfo: A central database for resolving microbial strain identifiers
117113Curators of the CIPCollection of Institut Pasteur (CIP 75.1)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2075.1