Strain identifier
BacDive ID: 13693
Type strain:
Species: Paracoccus denitrificans
Strain history: CIP <- 1999, A. Hiraishi, Toyohashi Univ. of Technology, Japan <- JCM
NCBI tax ID(s): 1302247 (strain), 266 (species)
General
@ref: 186
BacDive-ID: 13693
DSM-Number: 413
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative
description: Paracoccus denitrificans CCUG 30144 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from Soil,garden.
NCBI tax id
NCBI tax id | Matching level |
---|---|
266 | species |
1302247 | strain |
strain history
@ref | history |
---|---|
186 | <- IMG 1627 (Micrococcus denitrificans) <- J.G. Morris <- J. Lascelles <- W. Verhoeven |
67770 | IAM 15021 <-- NCCB 22021 <-- LMD 22.21 <-- M. W. Beijerinck. |
118902 | CIP <- 1999, A. Hiraishi, Toyohashi Univ. of Technology, Japan <- JCM |
doi: 10.13145/bacdive13693.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodobacterales
- family: Paracoccaceae
- genus: Paracoccus
- species: Paracoccus denitrificans
- full scientific name: Paracoccus denitrificans (Beijerinck and Minkman 1910) Davis 1969 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Micrococcus denitrificans
@ref: 186
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhodobacterales
family: Rhodobacteraceae
genus: Paracoccus
species: Paracoccus denitrificans
full scientific name: Paracoccus denitrificans (Beijerinck and Minkman 1910) Davis 1969 emend. Rainey et al. 1999
type strain: yes
Morphology
cell morphology
@ref | gram stain | confidence | cell shape | motility |
---|---|---|---|---|
69480 | negative | 99.996 | ||
118902 | negative | rod-shaped | no |
Culture and growth conditions
culture medium
@ref | name | growth | composition | link |
---|---|---|---|---|
35203 | MEDIUM 3 - Columbia agar | yes | Columbia agar (39.000 g);distilled water (1000.000 ml) | |
37731 | MEDIUM 3 - Columbia agar | yes | Columbia agar (39.000 g);distilled water (1000.000 ml) | |
186 | NUTRIENT AGAR (DSMZ Medium 1) | yes | Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water | https://mediadive.dsmz.de/medium/1 |
186 | MINERAL MEDIUM FOR CHEMOLITHOTROPHIC GROWTH (H-3) (DSMZ Medium 81) | yes | Name: MINERAL MEDIUM FOR CHEMOLITHOTROPHIC GROWTH (H-3) (DSMZ Medium 81) Composition: Agar 20.1005 g/l Na2HPO4 x 2 H2O 2.91457 g/l KH2PO4 2.31156 g/l NH4Cl 1.00503 g/l MgSO4 x 7 H2O 0.502512 g/l Ferric ammonium citrate 0.0502513 g/l CaCl2 x 2 H2O 0.0100503 g/l NaVO3 x H2O 0.00502512 g/l Calcium pantothenate 0.00251256 g/l Pyridoxine hydrochloride 0.00251256 g/l Nicotinic acid 0.00251256 g/l Thiamine-HCl x 2 H2O 0.00251256 g/l H3BO3 0.00150754 g/l CoCl2 x 6 H2O 0.00100503 g/l Riboflavin 0.000502513 g/l ZnSO4 x 7 H2O 0.000502513 g/l MnCl2 x 4 H2O 0.000150754 g/l Na2MoO4 x 2 H2O 0.000150754 g/l NiCl2 x 6 H2O 0.000100503 g/l CuCl2 x 2 H2O 5.02513e-05 g/l Vitamin B12 5.02513e-05 g/l Folic acid 1.00503e-05 g/l Biotin 5.02513e-06 g/l Distilled water | https://mediadive.dsmz.de/medium/81 |
118902 | CIP Medium 3 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
35203 | positive | growth | 30 | mesophilic |
37731 | positive | growth | 30 | mesophilic |
49937 | positive | growth | 26 | mesophilic |
186 | positive | growth | 30 | mesophilic |
67770 | positive | growth | 25 | mesophilic |
118902 | positive | growth | 25-41 | |
118902 | no | growth | 5 | psychrophilic |
118902 | no | growth | 10 | psychrophilic |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
49937 | aerobe |
118902 | obligate aerobe |
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 100 |
69480 | no | 99.989 |
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
118902 | NaCl | positive | growth | 0-4 % |
118902 | NaCl | no | growth | 6 % |
118902 | NaCl | no | growth | 8 % |
118902 | NaCl | no | growth | 10 % |
observation
- @ref: 20216
- observation: Degradation of creatine
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
118902 | 16947 | citrate | - | carbon source |
118902 | 4853 | esculin | - | hydrolysis |
118902 | 606565 | hippurate | + | hydrolysis |
118902 | 17632 | nitrate | + | reduction |
118902 | 16301 | nitrite | + | reduction |
118902 | 35020 | tributyrin | + | hydrolysis |
118902 | 17632 | nitrate | + | respiration |
metabolite production
- @ref: 118902
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
- @ref: 118902
- Chebi-ID: 15688
- metabolite: acetoin
- voges-proskauer-test: -
enzymes
@ref | value | activity | ec |
---|---|---|---|
118902 | oxidase | + | |
118902 | beta-galactosidase | - | 3.2.1.23 |
118902 | alcohol dehydrogenase | - | 1.1.1.1 |
118902 | gelatinase | - | |
118902 | amylase | - | |
118902 | DNase | - | |
118902 | caseinase | - | 3.4.21.50 |
118902 | catalase | + | 1.11.1.6 |
118902 | tween esterase | - | |
118902 | gamma-glutamyltransferase | + | 2.3.2.2 |
118902 | lecithinase | - | |
118902 | lipase | - | |
118902 | lysine decarboxylase | - | 4.1.1.18 |
118902 | ornithine decarboxylase | - | 4.1.1.17 |
118902 | protease | - | |
118902 | tryptophan deaminase | - | |
118902 | urease | + | 3.5.1.5 |
68382 | alkaline phosphatase | + | 3.1.3.1 |
68382 | esterase (C 4) | + | |
68382 | esterase lipase (C 8) | + | |
68382 | lipase (C 14) | - | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | valine arylamidase | - | |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | trypsin | - | 3.4.21.4 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | alpha-glucosidase | + | 3.2.1.20 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
fatty acid profile
fatty acids
@ref fatty acid percentage ECL 49937 C16:0 13.2 16 49937 C17:0 0.9 17 49937 C18:0 4.5 18 49937 C10:0 3OH 2.7 11.423 49937 C14:0 3OH/C16:1 ISO I 1.2 15.485 49937 C18:1 ω7c /12t/9t 72.3 17.824 49937 C19:0 CYCLO ω8c 1.9 18.9 49937 Unidentified 1.6 16.297 49937 unknown 11.798 2.5 11.798 - type of FA analysis: whole cell analysis
- method/protocol: CCUG
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
118902 | - | + | + | + | - | + | - | - | - | - | + | + | - | - | - | + | - | - | - | - |
API biotype100
@ref | GLU | FRU | GAL | TRE | MNE | SBE | MEL | SAC | RAF | MTE | MAL | LAC | LTE | MbGa | MaGa | CEL | GEN | MbGu | ESC | RIB | ARA | XYL | PLE | RHA | FUC | MLZ | DARL | LARL | XLT | DUL | TAG | GLY | INO | MAN | MTL | TUR | SOR | ADO | HBG | LYX | ERY | MDG | 3MDG | SAT | MUC | LTAT | DTAT | MTAT | DMLT | LMLT | CATE | TATE | TTE | CIT | GRT | GAT | 2KG | 5KG | TRY | NAG | GNT | PAC | PAT | pOBE | QAT | GTE | mOBE | BAT | PPAT | CMT | TGE | BET | PCE | ABT | HIN | LAT | CAP | CYT | HIS | SUC | FUM | GRE | GYT | AVT | ETN | TTN | GLN | ITA | 3OBU | APT | GTT | PRO | DALA | LALA | SER | MNT | PROP | TYR | 2KT |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
118902 | + | + | - | + | - | - | - | + | - | + | + | - | - | - | - | - | - | - | - | + | - | - | + | - | - | + | + | + | + | - | - | + | + | + | + | + | + | + | - | - | - | + | - | - | - | + | - | - | + | + | - | - | - | - | - | - | + | + | - | + | + | + | + | + | + | - | - | - | - | - | - | + | - | + | - | + | - | - | + | + | + | - | + | + | + | - | + | - | + | + | + | + | + | + | + | + | + | + | + |
Isolation, sampling and environmental information
isolation
@ref | sample type | country | origin.country | continent |
---|---|---|---|---|
49937 | Soil,garden | |||
67770 | Garden soil, Delft | Netherlands | NLD | Europe |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Engineered | #Agriculture | #Garden |
#Environmental | #Terrestrial | #Soil |
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
186 | 1 | Risk group (German classification) |
118902 | 1 | Risk group (French classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Paracoccus denitrificans strain ATCC 17741 clone ControlA04 16S ribosomal RNA gene, partial sequence | JF508186 | 661 | ena | 266 |
20218 | Paracoccus denitrificans strain ATCC 17741 clone ControlB11 16S ribosomal RNA gene, partial sequence | JF508203 | 673 | ena | 266 |
20218 | Paracoccus denitrificans 16S rRNA gene, strain ATCC 17741T | Y16927 | 1395 | ena | 266 |
20218 | Paracoccus denitrificans 16S rRNA gene, strain DSM 413 | Y16929 | 1395 | ena | 266 |
20218 | Paracoccus pantotrophus 16S rRNA gene, strain DSM 65 | Y16935 | 1395 | ena | 82367 |
20218 | Paracoccus denitrificans strain JCM6892 16S rRNA gene | Y17511 | 1418 | ena | 266 |
20218 | P.denitrificans 16S rRNA | X69159 | 1458 | ena | 266 |
20218 | Paracoccus pantotrophus 16S rRNA gene, strain LMG 4218 | Y16936 | 1395 | ena | 82367 |
20218 | Paracoccus denitrificans gene for 16S rRNA, partial sequence, strain: NBRC 102528 | AB681862 | 1388 | ena | 266 |
20218 | Paracoccus pantotrophus gene for 16S rRNA, partial sequence, strain: NBRC 16712 | AB681113 | 1388 | ena | 82367 |
20218 | Paracoccus denitrificans 16S rRNA gene, strain ATCC 19367 | Y16930 | 1395 | ena | 266 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Paracoccus denitrificans ATCC 19367 | GCA_004063735 | complete | ncbi | 266 |
66792 | Paracoccus denitrificans DSM 413 | GCA_900100045 | scaffold | ncbi | 266 |
66792 | Paracoccus denitrificans NBRC 102528 | GCA_007989485 | contig | ncbi | 266 |
66792 | Paracoccus denitrificans JCM 21484 | GCA_001313145 | contig | ncbi | 1302247 |
66792 | Paracoccus denitrificans JCM 21484 | 1302247.4 | wgs | patric | 1302247 |
66792 | Paracoccus denitrificans strain ATCC 19367 | 266.34 | complete | patric | 266 |
66792 | Paracoccus denitrificans strain DSM 413 | 266.10 | wgs | patric | 266 |
66792 | Paracoccus denitrificans strain NBRC 102528 | 266.43 | wgs | patric | 266 |
66792 | Paracoccus denitrificans ATCC 19367 | 2841597668 | complete | img | 266 |
66792 | Paracoccus denitrificans JCM 21484 | 2734481933 | draft | img | 1302247 |
66792 | Paracoccus denitrificans DSM 413 | 2597490357 | draft | img | 266 |
66792 | Paracoccus denitrificans ATCC 19367 | GCA_025598485 | contig | ncbi | 266 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
motile | no | 56.951 | no |
flagellated | no | 87.456 | no |
gram-positive | no | 98.544 | no |
anaerobic | no | 97.242 | yes |
aerobic | yes | 84.384 | no |
halophile | no | 84.557 | no |
spore-forming | no | 95.693 | no |
thermophile | no | 98.153 | yes |
glucose-util | yes | 88.338 | no |
glucose-ferment | no | 86.894 | no |
External links
@ref: 186
culture collection no.: CCUG 30144, LMG 4049, LMG 4219, IFO 13301, DSM 413, ATCC 17741, ATCC 19367, CCM 982, LMD 22.21, NCIB 8944, JCM 21484, IAM 15021, NBRC 102528, NCCB 22021, CIP 106306, IAM 12479, NCIMB 11627, JCM 6892, ICPB 3979
straininfo link
@ref | straininfo |
---|---|
82877 | 92366 |
82878 | 389384 |
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Enzymology | 1653018 | Cytochrome c' of Paracoccus denitrificans. | Gilmour R, Goodhew CF, Pettigrew GW | Biochim Biophys Acta | 10.1016/s0005-2728(05)80208-7 | 1991 | Amino Acid Sequence, Amino Acids/analysis, Chromatium/enzymology, Chromatography, Gel, Cytochrome c Group/*isolation & purification, Molecular Sequence Data, Paracoccus denitrificans/*enzymology, Protein Conformation, Rhodobacter capsulatus/enzymology, Rhodospirillum rubrum/enzymology | Genetics |
Enzymology | 7002036 | The regulation of hydrogenase formation as a differentiating character of strains of Paracoccus denitrificans. | Nokhal TH, Schlegel HG | Antonie Van Leeuwenhoek | 10.1007/BF00444069 | 1980 | Aerobiosis, Anaerobiosis, Cell Membrane/enzymology, Cell-Free System, Culture Media, Enzyme Induction, Hydrogenase, Oxidoreductases/*biosynthesis/metabolism, Paracoccus denitrificans/*classification/enzymology/growth & development | Cultivation |
Genetics | 7642505 | Integration of heterologous DNA into the genome of Paracoccus denitrificans is mediated by a family of IS1248-related elements and a second type of integrative recombination event. | Van Spanning RJ, Reijnders WN, Stouthamer AH | J Bacteriol | 10.1128/jb.177.16.4772-4778.1995 | 1995 | Base Sequence, Blotting, Southern, DNA Transposable Elements/*genetics, DNA, Bacterial/*genetics, Genetic Vectors, Genome, Bacterial, Gram-Negative Chemolithotrophic Bacteria/genetics, Molecular Sequence Data, Paracoccus denitrificans/classification/*genetics, *Recombination, Genetic, Restriction Mapping, Sequence Analysis, DNA, Thiobacillus/genetics | Transcriptome |
Metabolism | 9874223 | The surface-charge asymmetry and dimerisation of cytochrome c550 from Paracoccus denitrificans--implications for the interaction with cytochrome c peroxidase. | Pettigrew GW, Gilmour R, Goodhew CF, Hunter DJ, Devreese B, Van Beeumen J, Costa C, Prazeres S, Krippahl L, Palma PN, Moura I, Moura JJ | Eur J Biochem | 10.1046/j.1432-1327.1998.2580559.x | 1998 | Amino Acid Sequence, Bacterial Proteins/chemistry, Carbodiimides/metabolism, Computer Simulation, Cross-Linking Reagents/metabolism, Cytochrome c Group/*chemistry, Cytochrome-c Peroxidase/*metabolism, Dimerization, Electron Transport/physiology, Kinetics, Magnetic Resonance Spectroscopy, Models, Molecular, Molecular Sequence Data, Osmolar Concentration, Oxidation-Reduction, Paracoccus denitrificans/*chemistry, Protein Binding, Sequence Analysis | Enzymology |
Phylogeny | 10319488 | A re-evaluation of the taxonomy of Paracoccus denitrificans and a proposal for the combination Paracoccus pantotrophus comb. nov. | Rainey FA, Kelly DP, Stackebrandt E, Burghardt J, Hiraishi A, Katayama Y, Wood AP | Int J Syst Bacteriol | 10.1099/00207713-49-2-645 | 1999 | Cytochrome c Group/metabolism, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Genes, rRNA, Molecular Sequence Data, Nucleic Acid Hybridization, Paracoccus/*classification/genetics/physiology, Paracoccus denitrificans/*classification/genetics/physiology, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA | Genetics |
Biotechnology | 12501289 | Production of ubiquinone-10 using bacteria. | Yoshida H, Kotani Y, Ochiai K, Araki K | J Gen Appl Microbiol | 10.2323/jgam.44.19 | 1998 | ||
Phylogeny | 12624070 | Paracoccus yeeii sp. nov. (formerly CDC group EO-2), a novel bacterial species associated with human infection. | Daneshvar MI, Hollis DG, Weyant RS, Steigerwalt AG, Whitney AM, Douglas MP, Macgregor JP, Jordan JG, Mayer LW, Rassouli SM, Barchet W, Munro C, Shuttleworth L, Bernard K | J Clin Microbiol | 10.1128/JCM.41.3.1289-1294.2003 | 2003 | DNA, Bacterial/analysis, Gram-Negative Bacterial Infections/*microbiology, Humans, Molecular Sequence Data, Paracoccus/*classification/genetics, Phenotype, Phylogeny, RNA, Ribosomal, 16S/*analysis/genetics | Pathogenicity |
Enzymology | 12835921 | A novel enzyme, D-3-hydroxyaspartate aldolase from Paracoccus denitrificans IFO 13301: purification, characterization, and gene cloning. | Liu JQ, Dairi T, Itoh N, Kataoka M, Shimizu S | Appl Microbiol Biotechnol | 10.1007/s00253-003-1238-2 | 2003 | Amino Acid Sequence, Aspartic Acid/analogs & derivatives/*metabolism, Base Sequence, Cloning, Molecular, Fructose-Bisphosphate Aldolase/*genetics/isolation & purification/*metabolism, Hydrogen-Ion Concentration, Molecular Sequence Data, Molecular Weight, Paracoccus denitrificans/*enzymology, Substrate Specificity, Temperature | Metabolism |
Enzymology | 12959522 | Growth and nitrite and nitrous oxide accumulation of Paracoccus denitrificans ATCC 19367 in the presence of selected pesticides. | Saez F, Pozo C, Gomez MA, Rodelas B, Gonzalez-Lopez J | Environ Toxicol Chem | 10.1897/02-351 | 2003 | Carbon Dioxide/analysis, Nitrates/*pharmacokinetics, Nitrous Oxide/*pharmacokinetics, Paracoccus denitrificans/*growth & development/physiology, Pesticides/*toxicity, Water Pollutants, Chemical/*toxicity | |
Metabolism | 24271182 | Potential role of nitrite for abiotic Fe(II) oxidation and cell encrustation during nitrate reduction by denitrifying bacteria. | Klueglein N, Zeitvogel F, Stierhof YD, Floetenmeyer M, Konhauser KO, Kappler A, Obst M | Appl Environ Microbiol | 10.1128/AEM.03277-13 | 2013 | Acetates/metabolism, Anaerobiosis, Betaproteobacteria/growth & development/*metabolism/ultrastructure, Comamonadaceae/growth & development/*metabolism/ultrastructure, *Denitrification, Ferrous Compounds/*metabolism, Microscopy, Electron, Minerals/metabolism, Nitrates/*metabolism, Nitrites/*metabolism, Oxidation-Reduction, Periplasm/metabolism | |
Enzymology | 25805905 | Molecular, Physiological and Phenotypic Characterization of Paracoccus denitrificans ATCC 19367 Mutant Strain P-87 Producing Improved Coenzyme Q10. | Tokdar P, Sanakal A, Ranadive P, Khora SS, George S, Deshmukh SK | Indian J Microbiol | 10.1007/s12088-014-0506-4 | 2014 | ||
Phylogeny | 30663955 | Paracoccus suum sp. nov., isolated from a pig farm dust collector. | Heo J, Cho HY, Kim JS, Hong SB, Kwon SW, Kim SJ | Int J Syst Evol Microbiol | 10.1099/ijsem.0.003226 | 2019 | Animals, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, *Dust, Farms, Fatty Acids/chemistry, Paracoccus/*classification/isolation & purification, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Swine, Ubiquinone/chemistry | Transcriptome |
Genetics | 30897350 | Complete genome sequence of Paracoccus denitrificans ATCC 19367 and its denitrification characteristics. | Si YY, Xu KH, Yu XY, Wang MF, Chen XH | Can J Microbiol | 10.1139/cjm-2019-0037 | 2019 | Base Sequence, *Denitrification, Genome, Bacterial, Paracoccus denitrificans/*genetics/metabolism, *Whole Genome Sequencing | Metabolism |
Metabolism | 33305820 | Temperature and oxygen level determine N2 O respiration activities of heterotrophic N2 O-reducing bacteria: Biokinetic study. | Zhou Y, Suenaga T, Qi C, Riya S, Hosomi M, Terada A | Biotechnol Bioeng | 10.1002/bit.27654 | 2020 | Nitrous Oxide/*metabolism, Paracoccus denitrificans/*metabolism, Pseudomonas stutzeri/*metabolism, Rhodocyclaceae/*metabolism, *Temperature | |
Metabolism | 36252762 | Enhancement of biological denitrification by the addition of novel sRNA Pda200 under antibiotic pressure. | Wang M, Liang Y, Li F, Shen S, Huang X, Sun Y | Bioresour Technol | 10.1016/j.biortech.2022.128113 | 2022 | *Denitrification/genetics, Anti-Bacterial Agents/pharmacology/metabolism, *Paracoccus denitrificans, Wastewater |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
186 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 413) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-413 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20216 | Curators of the HKI | http://www.leibniz-hki.de/de/ | Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
35203 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/18421 | ||||
37731 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/10580 | ||||
49937 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 30144) | https://www.ccug.se/strain?id=30144 | |||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
68382 | Automatically annotated from API zym | |||||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
82877 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID92366.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
82878 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID389384.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
118902 | Curators of the CIP | Collection of Institut Pasteur (CIP 106306) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20106306 |