Strain identifier
BacDive ID: 11804
Type strain: 
Species: Desulfofundulus kuznetsovii
Strain Designation: 17
Strain history: <- M.B. Vainshtein, VKM <- T.N. Nazina, 17
NCBI tax ID(s): 760568 (strain), 58135 (species)
version 8.1 (current version)
General
@ref: 2377
BacDive-ID: 11804
DSM-Number: 6115
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, spore-forming, thermophilic, motile
description: Desulfofundulus kuznetsovii 17 is an anaerobe, spore-forming, thermophilic bacterium that was isolated from underground thermal mineral water.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 58135 | species |
| 760568 | strain |
strain history
- @ref: 2377
- history: <- M.B. Vainshtein, VKM <- T.N. Nazina, 17
doi: 10.13145/bacdive11804.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Peptococcaceae
- genus: Desulfofundulus
- species: Desulfofundulus kuznetsovii
- full scientific name: Desulfofundulus kuznetsovii (Nazina et al. 1990) Watanabe et al. 2018
synonyms
- @ref: 20215
- synonym: Desulfotomaculum kuznetsovii
@ref: 2377
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Peptococcaceae
genus: Desulfofundulus
species: Desulfofundulus kuznetsovii
full scientific name: Desulfofundulus kuznetsovii (Nazina et al. 1990) Watanabe et al. 2018
strain designation: 17
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 94.164 | |
| 69480 | 99.999 | positive |
multimedia
| @ref | multimedia content | caption | intellectual property rights |
|---|---|---|---|
| 66793 | EM_DSM_6115_1.jpg | electron microscopic image | © HZI/Manfred Rohde |
| 66793 | EM_DSM_6115_2.jpg | electron microscopic image | © HZI/Manfred Rohde |
| 66793 | EM_DSM_6115_3.jpg | electron microscopic image | © HZI/Manfred Rohde |
| 66793 | EM_DSM_6115_4.jpg | electron microscopic image | © HZI/Manfred Rohde |
| 66793 | EM_DSM_6115_5.jpg | electron microscopic image | © HZI/Manfred Rohde |
Culture and growth conditions
culture medium
- @ref: 2377
- name: DESULFOVIBRIO (POSTGATE) MEDIUM (DSMZ Medium 63)
- growth: yes
- link: https://mediadive.dsmz.de/medium/63
- composition: Name: DESULFOVIBRIO (POSTGATE) MEDIUM (DSMZ Medium 63) Composition: MgSO4 x 7 H2O 2.0 g/l Na-DL-lactate 2.0 g/l NH4Cl 1.0 g/l Yeast extract 1.0 g/l Na2SO4 1.0 g/l FeSO4 x 7 H2O 0.5 g/l K2HPO4 0.5 g/l CaCl2 x 2 H2O 0.1 g/l Na-thioglycolate 0.1 g/l Ascorbic acid 0.1 g/l Sodium resazurin 0.0005 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range | confidence |
|---|---|---|---|---|---|
| 2377 | positive | growth | 60 | thermophilic | |
| 69480 | thermophilic | 100 |
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 2377 | anaerobe | |
| 69480 | anaerobe | 99.998 |
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | yes | 91 |
| 69480 | yes | 100 |
Isolation, sampling and environmental information
isolation
- @ref: 2377
- sample type: underground thermal mineral water
- geographic location: Sukhumsk deposit
- country: USSR
- origin.country: RUS
- continent: Asia
isolation source categories
| Cat1 | Cat2 |
|---|---|
| #Environmental | #Aquatic |
| #Environmental | #Terrestrial |
taxonmaps
- @ref: 69479
- File name: preview.99_57616.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_403;96_4734;97_5747;98_7215;99_57616&stattab=map
- Last taxonomy: Desulfofundulus kuznetsovii
- 16S sequence: Y11569
- Sequence Identity:
- Total samples: 115
- soil counts: 7
- aquatic counts: 32
- animal counts: 76
Safety information
risk assessment
- @ref: 2377
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Desulfotomaculum kuznetsovii 16S rRNA gene, strain DSM 6115 | AJ294427 | 1525 | ena | 760568 |
| 20218 | D.kuznetsovii 16S rRNA gene | Y11569 | 1577 | ena | 760568 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Desulfofundulus kuznetsovii DSM 6115 | GCA_000214705 | complete | ncbi | 760568 |
| 66792 | Desulfotomaculum kuznetsovii DSM 6115 | 760568.4 | complete | patric | 760568 |
| 66792 | Desulfofundulus kuznetsovii DSM 6115 | 2515154209 | complete | img | 760568 |
GC content
- @ref: 2377
- GC-content: 54.9
- method: sequence analysis
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 91 | no |
| motile | yes | 81.723 | no |
| flagellated | no | 95.266 | no |
| gram-positive | no | 82.898 | no |
| anaerobic | yes | 99.511 | no |
| aerobic | no | 96.899 | yes |
| halophile | no | 96.122 | no |
| spore-forming | yes | 92.939 | no |
| thermophile | yes | 99.999 | yes |
| glucose-util | yes | 84.435 | no |
| glucose-ferment | no | 81.891 | no |
External links
@ref: 2377
culture collection no.: DSM 6115, VKM B-1805
straininfo link
- @ref: 81022
- straininfo: 48099
literature
- topic: Metabolism
- Pubmed-ID: 16133342
- title: Carbon monoxide conversion by thermophilic sulfate-reducing bacteria in pure culture and in co-culture with Carboxydothermus hydrogenoformans.
- authors: Parshina SN, Kijlstra S, Henstra AM, Sipma J, Plugge CM, Stams AJ
- journal: Appl Microbiol Biotechnol
- DOI: 10.1007/s00253-004-1878-x
- year: 2005
- mesh: Carbon Monoxide/*metabolism, Coculture Techniques, Gram-Positive Bacteria/*metabolism, Sulfates/*metabolism, Sulfur-Reducing Bacteria/*metabolism, Time Factors
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 2377 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 6115) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-6115 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 66793 | Mukherjee et al. | 10.1038/nbt.3886 | GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life | 35: 676-683 2017 | 28604660 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 81022 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID48099.1 | StrainInfo: A central database for resolving microbial strain identifiers |