Strain identifier

BacDive ID: 11427

Type strain: Yes

Species: Brevibacillus formosus

Strain Designation: NRS-863

Strain history: CIP <- 1995, O. Shida, Higeta Shoyu Lab., Chiba, Japan: strain NRS-863 <- NRRL <- J.R. Porter <- G. Bredemann

NCBI tax ID(s): 54913 (species)

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General

@ref: 3749

BacDive-ID: 11427

DSM-Number: 9885

keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic, motile

description: Brevibacillus formosus NRS-863 is a spore-forming, mesophilic, motile bacterium of the family Paenibacillaceae.

NCBI tax id

  • NCBI tax id: 54913
  • Matching level: species

strain history

@refhistory
3749<- NRRL <- NRS 863 <- J. R. Porter (B. formosus, F12) <- G. Bredemann
67770O. Shida <-- NRRL NRS-863 <-- J. R. Porter F12 <-- G. Bredemann.
119428CIP <- 1995, O. Shida, Higeta Shoyu Lab., Chiba, Japan: strain NRS-863 <- NRRL <- J.R. Porter <- G. Bredemann

doi: 10.13145/bacdive11427.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Paenibacillaceae
  • genus: Brevibacillus
  • species: Brevibacillus formosus
  • full scientific name: Brevibacillus formosus (Shida et al. 1995 ex Porter 1940) Shida et al. 1996

  • synonyms

    • @ref: 20215
    • synonym: Bacillus formosus

@ref: 3749

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Paenibacillaceae

genus: Brevibacillus

species: Brevibacillus formosus

full scientific name: Brevibacillus formosus (Shida et al. 1995) Shida et al. 1996

strain designation: NRS-863

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480yes95.11
69480100positive

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
3749NUTRIENT AGAR (DSMZ Medium 1)yeshttps://mediadive.dsmz.de/medium/1Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
39044MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
119428CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperaturerange
3749positivegrowth30mesophilic
39044positivegrowth30mesophilic
67770positivegrowth30mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481yes100
69480yes100

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    59097C16:01.216
    59097C13:0 iso0.812.612
    59097C14:0 ISO1.713.618
    59097C15:0 ANTEISO38.614.711
    59097C15:0 ISO4214.621
    59097C16:0 iso1.115.626
    59097C16:1 ω11c1.815.757
    59097C16:1 ω7c alcohol1.815.386
    59097C17:0 anteiso116.722
    59097C17:0 iso2.416.629
    59097C17:1 ISO I/C16:0 DMA1.516.481
    59097C17:1 ω10c ISO2.716.387
    59097C18:1 ω9c1.317.769
    59097C18:2 ω6,9c/C18:0 ANTE2.117.724
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

Isolation, sampling and environmental information

isolation

@refcountryorigin.countrycontinentsample typegeographic location
3749USAUSANorth America
67770Soil
119428GermanyDEUEuropeEnvironment, SoilBorstel

taxonmaps

  • @ref: 69479
  • File name: preview.99_346.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_95;96_241;97_263;98_292;99_346&stattab=map
  • Last taxonomy: Brevibacillus
  • 16S sequence: AB680945
  • Sequence Identity:
  • Total samples: 7747
  • soil counts: 3695
  • aquatic counts: 1150
  • animal counts: 2257
  • plant counts: 645

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
37491Risk group (German classification)
1194281Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Brevibacillus formosus clone KI-3F 16S ribosomal RNA gene, partial sequence; 16S-23S internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequenceAF478096518ena54913
20218Brevibacillus formosus gene for 16S rRNA, partial sequence, strain:DSM 9885TAB1127121486ena54913
20218Brevibacillus formosus gene for 16S rRNA, partial sequence, strain: NBRC 15716AB6809451461ena54913
20218Brevibacillus formosus DNA for 16S ribosomal RNAD784601419ena54913

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Brevibacillus formosus strain DSM 988554913.4wgspatric54913
66792Brevibacillus formosus strain NBRC 1571654913.11wgspatric54913
66792Brevibacillus formosus DSM 98852654587633draftimg54913
67770Brevibacillus formosus NBRC 15716GCA_006540185contigncbi54913
67770Brevibacillus formosus DSM 9885GCA_001012775scaffoldncbi54913

GC content

@refGC-contentmethod
374947.2
6777047.2high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
gram-positiveyes76.151no
anaerobicno98.161no
halophileno92.561no
spore-formingyes96.141no
glucose-utilyes87.53no
aerobicyes84.561no
thermophileno97.446yes
motileyes87.673no
flagellatedyes63.402no
glucose-fermentno94.028no

External links

@ref: 3749

culture collection no.: DSM 9885, ATCC 51669, IFO 15716, JCM 9169, NBRC 15716, NRRL NRS-863, CCUG 51064, CIP 104544, LMG 16010, CGMCC 1.3105

straininfo link

@refstraininfo
806638357
80664312204

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny19700454Brevibacillus fluminis sp. nov., isolated from sediment of estuarine wetland.Choi MJ, Bae JY, Kim KY, Kang H, Cha CJInt J Syst Evol Microbiol10.1099/ijs.0.012351-02009Base Sequence, Fatty Acids/analysis, Geologic Sediments/*microbiology, Gram-Positive Endospore-Forming Rods/*classification/genetics/isolation & purification/physiology, Molecular Sequence Data, Phylogeny, *WetlandsGenetics
Phylogeny26585900Brevibacillus gelatini sp. nov., isolated from a hot spring.Inan K, Ozer A, Ibrahim Guler H, Osman Belduz A, Canakci SInt J Syst Evol Microbiol10.1099/ijsem.0.0007802015

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
3749Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 9885)https://www.dsmz.de/collection/catalogue/details/culture/DSM-9885
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
39044Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/16464
59097Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 51064)https://www.ccug.se/strain?id=51064
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
80663Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID8357.1StrainInfo: A central database for resolving microbial strain identifiers
80664Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID312204.1StrainInfo: A central database for resolving microbial strain identifiers
119428Curators of the CIPCollection of Institut Pasteur (CIP 104544)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20104544