Strain identifier
BacDive ID: 4907
Type strain:
Species: Escherichia coli
Strain Designation: U5/41, U 5/41
Strain history: CIP <- 1954, NCTC <- 1952, F. Kauffmann, Copenhagen, Denmark: strain U 5/41
NCBI tax ID(s): 866789 (strain), 562 (species)
General
@ref: 9115
BacDive-ID: 4907
DSM-Number: 30083
keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, mesophilic, motile, antibiotic resistance, human pathogen
description: Escherichia coli U5/41 is a facultative anaerobe, mesophilic, motile human pathogen that has multiple antibiotic resistances and was isolated from urine.
NCBI tax id
NCBI tax id | Matching level |
---|---|
562 | species |
866789 | strain |
strain history
@ref | history |
---|---|
9115 | <- ATCC <- NCTC <- F. Kauffmann, U5/41 |
67770 | Y. Kosako 82039 <-- R. Sakazaki <-- ATCC 11775 <-- NCTC 9001 <-- F. Kauffmann U 5/41. |
67772 | ATCC <- NCTC <- F. Kauffmann, U5/41 |
118688 | CIP <- 1954, NCTC <- 1952, F. Kauffmann, Copenhagen, Denmark: strain U 5/41 |
doi: 10.13145/bacdive4907.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Enterobacterales
- family: Enterobacteriaceae
- genus: Escherichia
- species: Escherichia coli
- full scientific name: Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Bacillus coli
@ref: 9115
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Enterobacteriales, not validated
family: Enterobacteriaceae
genus: Escherichia
species: Escherichia coli
full scientific name: Escherichia coli (Migula 1895) Castellani and Chalmers 1919
strain designation: U5/41, U 5/41
type strain: yes
Morphology
cell morphology
@ref | motility | confidence | gram stain | cell shape |
---|---|---|---|---|
69480 | yes | 96.536 | ||
69480 | 99.994 | negative | ||
118688 | yes | negative | rod-shaped |
multimedia
@ref | multimedia content | caption | intellectual property rights |
---|---|---|---|
66793 | EM_DSM_30083_1.jpg | electron microscopic image | © HZI/Manfred Rohde |
66793 | EM_DSM_30083_2.jpg | electron microscopic image | © HZI/Manfred Rohde |
66793 | EM_DSM_30083_3.jpg | electron microscopic image | © HZI/Manfred Rohde |
66793 | EM_DSM_30083_4.jpg | electron microscopic image | © HZI/Manfred Rohde |
66793 | EM_DSM_30083_5.jpg | electron microscopic image | © HZI/Manfred Rohde |
66793 | EM_DSM_30083_6.jpg | electron microscopic image | © HZI/Manfred Rohde |
66793 | EM_DSM_30083_7.jpg | electron microscopic image | © HZI/Manfred Rohde |
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
9115 | NUTRIENT AGAR (DSMZ Medium 1) | yes | https://mediadive.dsmz.de/medium/1 | Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water |
38566 | MEDIUM 72- for trypto casein soja agar | yes | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) | |
118688 | CIP Medium 72 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
9115 | positive | growth | 37 | mesophilic |
38566 | positive | growth | 30 | mesophilic |
67770 | positive | growth | 37 | mesophilic |
67772 | positive | optimum | 37 | mesophilic |
118688 | positive | growth | 10-41 | |
118688 | no | growth | 5 | psychrophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 118688
- oxygen tolerance: facultative anaerobe
antibiogram
@ref | medium | incubation temperature | oxygen condition | Penicillin G | oxacillin | ampicillin | ticarcillin | mezlocillin | cefalotin | cefazolin | cefotaxime | aztreonam | imipenem | tetracycline | chloramphenicol | gentamycin | amikacin | vancomycin | erythromycin | lincomycin | ofloxacin | norfloxacin | colistin | pipemidic acid | nitrofurantoin | bacitracin | polymyxin b | kanamycin | neomycin | doxycycline | ceftriaxone | clindamycin | fosfomycin | moxifloxacin | linezolid | nystatin | quinupristin/dalfopristin | teicoplanin | piperacillin/tazobactam | incubation time |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
9115 | Mueller-Hinton Agar | 37 | aerob | 0 | 0 | 20 | 30 | 26 | 18 | 26 | 34-36 | 34 | 30-32 | 26-28 | 28-30 | 22 | 22 | 6 | 8-10 | 0 | 32-34 | 36-38 | 14 | 26 | 24 | 0 | 16 | 20 | 18 | 22 | 32 | 0 | 30-32 | 32-34 | 0 | 0 | 0 | 0 | 26 | |
9115 | Mueller-Hinton Agar | 37 | aerob | 0 | 0 | 20 | 32 | 26 | 18 | 28 | 36 | 36 | 32 | 26 | 30 | 20 | 22-24 | 8 | 10 | 0 | 32-34 | 40 | 14 | 40 | 24-26 | 0 | 14 | 20-22 | 16-18 | 20-22 | 32 | 0 | 32 | 34 | 0 | 0 | 0 | 0 | 26-28 | 1 |
9115 | Mueller-Hinton Agar | 0 | 0 | 18-20 | 30 | 26 | 18 | 26-28 | 38 | 36 | 34 | 28 | 30 | 22-24 | 24 | 0 | 10 | 0 | 34 | 38 | 14 | 28 | 26 | 0 | 14-16 | 24 | 20 | 22 | 34 | 0 | 28-30 | 34 | 0 | 0 | 0 | 0 | 26 | |||
9115 | Mueller-Hinton Agar | 37 | aerob | 0 | 0 | 20 | 30 | 28 | 20 | 28-30 | 36-38 | 36-38 | 34 | 26-28 | 26 | 22 | 22 | 0 | 10 | 0 | 32-34 | 38-40 | 14-16 | 30 | 28 | 0 | 16 | 22 | 20 | 22 | 34-36 | 0 | 32 | 32-34 | 0 | 0 | 0 | 0 | 28 | 1 |
9115 | Mueller-Hinton Agar | 37 | 0 | 0 | 14 | 22 | 18 | 12 | 18 | 24 | 24 | 22 | 20 | 18-20 | 14 | 14 | 0 | 6 | 0 | 22 | 22 | 8 | 22 | 16 | 0 | 10 | 16 | 14 | 16 | n.d. | n.d. | n.d. | n.d. | n.d. | n.d. | n.d. | n.d. | n.d. | ||
9115 | Mueller-Hinton Agar | 37 | aerob | 0 | 0 | 18 | 28 | 24 | 18 | 24-26 | 32 | 32 | 30 | 22 | 28 | 20 | 22 | 0 | 10 | 0 | 32 | 34-36 | 14 | 26 | 24 | 0 | 14-16 | 22 | 18 | 20 | 30 | 0 | 30 | 32 | 0 | 0 | 0 | 0 | 24 | |
9115 | Mueller-Hinton Agar | 37 | aerob | 0 | 0 | 18 | 28 | 24 | 18 | 24-26 | 32 | 32 | 30 | 22 | 28 | 20 | 22 | 0 | 10 | 0 | 32 | 34-36 | 14 | 26 | 24 | 0 | 14-16 | 22 | 18 | 20 | 30 | 0 | 30 | 32 | 0 | 0 | 0 | 0 | 24 |
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 100 |
69480 | no | 99.839 |
metabolite utilization
@ref | metabolite | utilization activity | kind of utilization tested | Chebi-ID |
---|---|---|---|---|
68371 | Potassium 5-ketogluconate | - | builds acid from | |
68371 | Potassium 2-ketogluconate | - | builds acid from | |
68371 | gluconate | + | builds acid from | 24265 |
68371 | L-arabitol | - | builds acid from | 18403 |
68371 | D-arabitol | - | builds acid from | 18333 |
68371 | L-fucose | + | builds acid from | 18287 |
68371 | D-fucose | - | builds acid from | 28847 |
68371 | D-tagatose | + | builds acid from | 16443 |
68371 | D-lyxose | - | builds acid from | 62318 |
68371 | turanose | - | builds acid from | 32528 |
68371 | gentiobiose | + | builds acid from | 28066 |
68371 | xylitol | - | builds acid from | 17151 |
68371 | glycogen | - | builds acid from | 28087 |
68371 | starch | - | builds acid from | 28017 |
68371 | raffinose | - | builds acid from | 16634 |
68371 | melezitose | - | builds acid from | 6731 |
68371 | inulin | - | builds acid from | 15443 |
68371 | trehalose | + | builds acid from | 27082 |
68371 | sucrose | - | builds acid from | 17992 |
68371 | melibiose | + | builds acid from | 28053 |
68371 | lactose | + | builds acid from | 17716 |
68371 | maltose | + | builds acid from | 17306 |
68371 | cellobiose | - | builds acid from | 17057 |
68371 | salicin | + | builds acid from | 17814 |
68371 | esculin | - | builds acid from | 4853 |
68371 | arbutin | - | builds acid from | 18305 |
68371 | amygdalin | - | builds acid from | 27613 |
68371 | N-acetylglucosamine | + | builds acid from | 59640 |
68371 | methyl alpha-D-glucopyranoside | - | builds acid from | 320061 |
68371 | methyl alpha-D-mannoside | - | builds acid from | 43943 |
68371 | D-sorbitol | + | builds acid from | 17924 |
68371 | D-mannitol | + | builds acid from | 16899 |
68371 | myo-inositol | - | builds acid from | 17268 |
68371 | galactitol | - | builds acid from | 16813 |
68371 | L-rhamnose | + | builds acid from | 62345 |
68371 | L-sorbose | + | builds acid from | 17266 |
68371 | D-mannose | + | builds acid from | 16024 |
68371 | D-fructose | + | builds acid from | 15824 |
68371 | D-glucose | + | builds acid from | 17634 |
68371 | D-galactose | + | builds acid from | 12936 |
68371 | methyl beta-D-xylopyranoside | - | builds acid from | 74863 |
68371 | ribitol | - | builds acid from | 15963 |
68371 | L-xylose | - | builds acid from | 65328 |
68371 | D-xylose | - | builds acid from | 65327 |
68371 | D-ribose | + | builds acid from | 16988 |
68371 | L-arabinose | + | builds acid from | 30849 |
68371 | D-arabinose | + | builds acid from | 17108 |
68371 | erythritol | - | builds acid from | 17113 |
68371 | glycerol | + | builds acid from | 17754 |
68368 | nitrate | + | reduction | 17632 |
68368 | L-arabinose | + | fermentation | 30849 |
68368 | amygdalin | - | fermentation | 27613 |
68368 | melibiose | + | fermentation | 28053 |
68368 | sucrose | - | fermentation | 17992 |
68368 | L-rhamnose | + | fermentation | 62345 |
68368 | sorbitol | + | fermentation | 30911 |
68368 | myo-inositol | - | fermentation | 17268 |
68368 | D-mannitol | + | fermentation | 16899 |
68368 | D-glucose | + | fermentation | 17634 |
68368 | gelatin | - | hydrolysis | 5291 |
68368 | tryptophan | + | energy source | 27897 |
68368 | urea | - | hydrolysis | 16199 |
68368 | citrate | - | assimilation | 16947 |
68368 | ornithine | + | degradation | 18257 |
68368 | arginine | - | hydrolysis | 29016 |
118688 | mannitol | + | fermentation | 29864 |
118688 | citrate | - | carbon source | 16947 |
118688 | esculin | + | hydrolysis | 4853 |
118688 | glucose | + | fermentation | 17234 |
118688 | lactose | + | fermentation | 17716 |
118688 | nitrate | + | reduction | 17632 |
118688 | nitrite | + | reduction | 16301 |
118688 | malonate | - | assimilation | 15792 |
118688 | sodium thiosulfate | - | builds gas from | 132112 |
antibiotic resistance
- @ref: 118688
- metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
- is antibiotic: yes
- is sensitive: yes
- is resistant: no
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
68368 | 16301 | nitrite | yes |
68368 | 15688 | acetoin | no |
68368 | 35581 | indole | yes |
68368 | 16136 | hydrogen sulfide | no |
118688 | 35581 | indole | yes |
metabolite tests
@ref | Chebi-ID | metabolite | voges-proskauer-test | indole test | methylred-test |
---|---|---|---|---|---|
68368 | 15688 | acetoin | - | ||
68368 | 35581 | indole | + | ||
118688 | 15688 | acetoin | - | ||
118688 | 17234 | glucose | + |
enzymes
@ref | value | activity | ec |
---|---|---|---|
68382 | alpha-fucosidase | - | 3.2.1.51 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | alpha-glucosidase | - | 3.2.1.20 |
68382 | beta-glucuronidase | + | 3.2.1.31 |
68382 | beta-galactosidase | + | 3.2.1.23 |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | trypsin | + | 3.4.21.4 |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | valine arylamidase | + | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | lipase (C 14) | - | |
68382 | esterase lipase (C 8) | - | |
68382 | esterase (C 4) | - | |
68382 | alkaline phosphatase | + | 3.1.3.1 |
68368 | cytochrome oxidase | - | 1.9.3.1 |
68368 | gelatinase | - | |
68368 | tryptophan deaminase | - | 4.1.99.1 |
68368 | urease | - | 3.5.1.5 |
68368 | ornithine decarboxylase | + | 4.1.1.17 |
68368 | arginine dihydrolase | - | 3.5.3.6 |
68368 | beta-galactosidase | + | 3.2.1.23 |
118688 | oxidase | - | |
118688 | beta-galactosidase | + | 3.2.1.23 |
118688 | alcohol dehydrogenase | - | 1.1.1.1 |
118688 | gelatinase | - | |
118688 | catalase | + | 1.11.1.6 |
118688 | lysine decarboxylase | + | 4.1.1.18 |
118688 | ornithine decarboxylase | + | 4.1.1.17 |
118688 | tryptophan deaminase | - | |
118688 | urease | - | 3.5.1.5 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
118688 | - | + | - | - | - | + | + | - | + | - | + | + | - | + | + | - | - | - | - | - |
API 20E
@ref | ONPG | ADH Arg | LDC Lys | ODC | CIT | H2S | URE | TDA Trp | IND | VP | GEL | GLU | MAN | INO | Sor | RHA | SAC | MEL | AMY | ARA | OX | NO2 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
9115 | + | - | + | + | - | - | - | - | + | - | - | + | + | - | + | + | - | + | - | + | - | + |
9115 | + | - | + | + | - | - | - | - | + | - | - | + | + | - | + | + | - | + | - | + | ||
9115 | + | - | +/- | + | - | - | - | - | + | - | - | + | + | - | + | + | - | + | - | + | ||
9115 | + | - | + | + | - | - | - | - | + | - | - | + | + | - | + | + | - | + | - | + | ||
9115 | + | - | + | + | - | - | - | - | + | - | - | + | + | - | + | + | - | + | - | + | - | |
9115 | + | - | + | + | - | - | - | - | + | - | - | + | + | - | + | + | - | + | - | + | - | |
9115 | + | - | + | + | - | - | - | - | + | - | - | + | + | - | + | + | - | + | - | + | - | |
9115 | + | - | + | + | - | - | - | - | + | - | - | + | + | - | + | + | - | + | - | + | - | |
9115 | + | - | + | + | - | - | - | - | + | - | - | + | + | - | + | + | - | + | - | + | - | |
9115 | + | - | + | + | - | - | - | - | + | - | - | + | + | - | + | + | - | + | - | + | - |
API 50CHac
@ref | Q | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
9115 | - | + | - | + | + | + | - | - | - | - | + | + | + | + | + | + | - | - | + | + | - | - | + | - | - | - | + | - | + | + | + | - | + | - | - | - | - | - | - | + | - | - | + | - | + | - | - | + | - | - |
API biotype100
@ref | GLU | FRU | GAL | TRE | MNE | SBE | MEL | SAC | RAF | MTE | MAL | LAC | LTE | MbGa | MaGa | CEL | GEN | MbGu | ESC | RIB | ARA | XYL | PLE | RHA | FUC | MLZ | DARL | LARL | XLT | DUL | TAG | GLY | INO | MAN | MTL | TUR | SOR | ADO | HBG | LYX | ERY | MDG | 3MDG | SAT | MUC | LTAT | DTAT | MTAT | DMLT | LMLT | CATE | TATE | TTE | CIT | GRT | GAT | 2KG | 5KG | TRY | NAG | GNT | PAC | PAT | pOBE | QAT | GTE | mOBE | BAT | PPAT | CMT | TGE | BET | PCE | ABT | HIN | LAT | CAP | CYT | HIS | SUC | FUM | GRE | GYT | AVT | ETN | TTN | GLN | ITA | 3OBU | APT | GTT | PRO | DALA | LALA | SER | MNT | PROP | TYR | 2KT |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
118688 | + | + | + | + | + | + | + | - | - | + | + | + | + | + | + | - | + | + | + | + | + | - | - | + | + | - | - | - | - | - | + | + | - | + | - | - | + | - | + | - | - | - | - | + | + | + | - | - | + | + | - | - | - | - | + | + | - | - | + | + | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | - | - | - | + | + | - | + | - | - | - | + | - | + | + | - | - | + | + | + | - | + | - | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | sampling date | geographic location | country | origin.country | continent | isolation date |
---|---|---|---|---|---|---|---|
9115 | urine | ||||||
67770 | Urine | ||||||
67772 | Urine | 1991 | |||||
118688 | Human, Urine | Copenhagen | Denmark | DNK | Europe | 1952 |
isolation source categories
- Cat1: #Host Body Product
- Cat2: #Fluids
- Cat3: #Urine
taxonmaps
- @ref: 69479
- File name: preview.99_8.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_6;96_7;97_7;98_7;99_8&stattab=map
- Last taxonomy: Enterobacteriaceae
- 16S sequence: LC069032
- Sequence Identity:
- Total samples: 97630
- soil counts: 2111
- aquatic counts: 5613
- animal counts: 88071
- plant counts: 1835
Safety information
risk assessment
@ref | pathogenicity human | pathogenicity animal | biosafety level | biosafety level comment |
---|---|---|---|---|
9115 | yes | yes | 2 | Risk group (German classification) |
67772 | 2 | |||
118688 | 2 | Risk group (French classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | E.coli (ATCC 11775T) gene for 16S rRNA | X80725 | 1450 | ena | 866789 |
20218 | Escherichia coli strain DSM 30083 16S ribosomal RNA gene, partial sequence | HQ012019 | 936 | ena | 866789 |
20218 | Escherichia coli gene for 16S ribosomal RNA, partial sequence, strain: JCM1649 | AB242910 | 1110 | ena | 866789 |
20218 | Escherichia coli strain KCTC 2441 16S ribosomal RNA gene, partial sequence | EU014689 | 1541 | ena | 562 |
20218 | Escherichia coli gene for 16S rRNA, partial sequence, strain: NBRC 102203 | AB681728 | 1467 | ena | 562 |
67770 | Escherichia coli gene for 16S ribosomal RNA, partial sequence, strain: JCM 1649 | LC069032 | 1464 | ena | 562 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Escherichia coli DSM 30083 = JCM 1649 = ATCC 11775 | GCA_003697165 | complete | ncbi | 866789 |
66792 | Escherichia coli DSM 30083 = JCM 1649 = ATCC 11775 | GCA_000690815 | contig | ncbi | 866789 |
66792 | Escherichia coli DSM 30083 = JCM 1649 = ATCC 11775 ATCC 11775 | GCA_000734955 | contig | ncbi | 866789 |
66792 | Escherichia coli DSM 30083 = JCM 1649 = ATCC 11775 | GCA_000613265 | contig | ncbi | 866789 |
66792 | Escherichia coli DSM 30083 = JCM 1649 = ATCC 11775 | 866789.18 | complete | patric | 866789 |
66792 | Escherichia coli DSM 30083 = JCM 1649 = ATCC 11775 | 866789.7 | wgs | patric | 866789 |
66792 | Escherichia coli DSM 30083 = JCM 1649 = ATCC 11775 | 866789.6 | wgs | patric | 866789 |
66792 | Escherichia coli DSM 30083 = JCM 1649 = ATCC 11775 | 866789.5 | wgs | patric | 866789 |
66792 | Escherichia coli strain NCTC9001 | 562.7382 | complete | patric | 562 |
66792 | Escherichia coli O1:K1:H7 U5/41, DSM 30083 | 2528311135 | draft | img | 866789 |
66792 | Escherichia coli ATCC 11775 | 2897341779 | complete | img | 562 |
66792 | Escherichia coli O1:K1:H7 U5/41, DSM 30083 | 2574180325 | draft | img | 866789 |
66792 | Escherichia coli O1:K1:H7 U5/41, DSM 30083 | 2588253787 | draft | img | 866789 |
66792 | Escherichia coli NCTC9001 | 2687453512 | complete | img | 562 |
67770 | Escherichia coli NCTC9001 | GCA_900706755 | contig | ncbi | 562 |
66792 | Escherichia coli DSM 30083 = JCM 1649 = ATCC 11775 | GCA_024519395 | scaffold | ncbi | 866789 |
GC content
- @ref: 67770
- GC-content: 49.2
- method: thermal denaturation, midpoint method (Tm)
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
motile | yes | 90.296 | no |
motile | yes | 90.296 | no |
flagellated | no | 52.991 | no |
flagellated | no | 52.991 | no |
gram-positive | no | 98.215 | no |
gram-positive | no | 98.215 | no |
anaerobic | no | 94.583 | no |
anaerobic | no | 94.583 | no |
aerobic | yes | 81.9 | no |
aerobic | yes | 81.9 | no |
halophile | no | 92.545 | no |
halophile | no | 92.545 | no |
spore-forming | no | 93.888 | no |
spore-forming | no | 93.888 | no |
glucose-util | yes | 93.951 | no |
glucose-util | yes | 93.951 | no |
thermophile | no | 99.36 | yes |
thermophile | no | 99.36 | yes |
glucose-ferment | yes | 93.988 | yes |
glucose-ferment | yes | 93.988 | yes |
External links
@ref: 9115
culture collection no.: DSM 30083, ATCC 11775, CCM 5172, CIP 54.8, IAM 12119, JCM 1649, NCDO 1989, NCTC 9001, WDCM 00090, BCRC 10675, CCUG 24, CCUG 29300, CECT 515, CGMCC 1.2993, KCTC 2441, LMG 2092, NBRC 102203, NCIMB 11943, VTT E-94564, UCCCB113, WDCM 00155
straininfo link
- @ref: 74405
- straininfo: 14277
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
9115 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 30083) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-30083 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
38566 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/17456 | ||||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
66793 | Mukherjee et al. | 10.1038/nbt.3886 | GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life | 35: 676-683 2017 | 28604660 | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
67772 | Curators of the UCCCB | https://ucccb.uc.pt/ | ||||
68368 | Automatically annotated from API 20E | |||||
68371 | Automatically annotated from API 50CH acid | |||||
68382 | Automatically annotated from API zym | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
74405 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID14277.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
118688 | Curators of the CIP | Collection of Institut Pasteur (CIP 54.8) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2054.8 |