Name: Calditerricola yamamurae YMO722
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 1563

Type strain:

Species: Calditerricola yamamurae

Strain Designation: YMO722

Culture col. no.: DSM 45224, ATCC BAA-1461, JCM 14720

Strain history: T. Oshima YMO722.

NCBI tax ID(s): 448141 (species)

SI-ID 397201

DSM 45224

Section

Calditerricola yamamurae YMO722 is an aerobe, thermophilic, Gram-negative bacterium that was isolated from high-temperature compost.

Gram-negative
rod-shaped
aerobe
thermophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Bacillaceae*
	Genus	*Calditerricola*
	Species	**Calditerricola yamamurae**
	Full Scientific Name (LPSN)	Calditerricola yamamurae Moriya et al. 2011

Information on morphological and physiological properties Morphology

[Ref.: #29672]	Gram stain	negative

[Ref.: #29672]	Cell shape	rod-shaped

Multimedia content

[Ref.: #15803]

Caption:

Medium 1108 72°C

[Ref.: #15803]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #15803]

Culture medium

CYS MEDIUM (DSMZ Medium 1108)

[Ref.: #15803]

Culture medium growth

[Ref.: #15803]

Culture medium link

Medium recipe at MediaDive

[Ref.: #15803]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #15803]	growth	72 °C
[Ref.: #29672]	growth	56-81 °C
[Ref.: #29672]	optimum	72 °C
[Ref.: #67770]	growth	72 °C

[Ref.: #15803]	Temperature range	thermophilic
[Ref.: #29672]	Temperature range	hyperthermophilic
[Ref.: #29672]	Temperature range	thermophilic
[Ref.: #67770]	Temperature range	thermophilic

	pH	Kind of pH		pH
[Ref.: #29672]			optimum	7
[Ref.: #29672]			growth	6.3-9.1

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29672]

Oxygen tolerance

aerobe

[Ref.: #29672]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29672]		NaCl		growth	0-2	%
[Ref.: #29672]		NaCl		optimum	1.6	%

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #15803]	Sample type/isolated from	high-temperature compost
[Ref.: #15803]	Geographic location (country and/or sea, region)	Kagoshima prefecture
[Ref.: #15803]	Country	Japan
[Ref.: #15803]	Country ISO 3 Code	JPN
[Ref.: #15803]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	High-temperature compost in the city of Kagoshima
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Biodegradation	#Composting
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB308475 (>99% sequence identity) for Calditerricola yamamurae from Microbeatlas

Aquatic Samples	305
Soil Samples	1596
Animal Samples	486
Plant Samples	423
Total Samples	2810

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #15803]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #15803]	Calditerricola yamamurae gene for 16S rRNA, partial sequence	AB308475	1535	ENA	448141 tax ID

[Ref.: #15803]	GC-content	64 mol%	high performance liquid chromatography (HPLC)
[Ref.: #29672]	GC-content	64 mol%

Availability in culture collections External links

[Ref.: #15803]

Culture collection no.

DSM 45224, ATCC BAA-1461, JCM 14720

[Ref.: #71208]

SI-ID 397201

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Calditerricola satsumensis gen. nov., sp. nov. and Calditerricola yamamurae sp. nov., extreme thermophiles isolated from a high-temperature compost.	Moriya T, Hikota T, Yumoto I, Ito T, Terui Y, Yamagishi A, Oshima T	Int J Syst Evol Microbiol	10.1099/ijs.0.018416-0	2010	*

References

#15803

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45224

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29672

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26058 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#71208

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID397201.1 )

#26058

IJSEM 631 2011 ( DOI 10.1099/ijs.0.018416-0 , PubMed 20400666 )

* These data were automatically processed and therefore are not curated

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