Name: Calditerricola satsumensis YMO81
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 1562

Type strain:

Species: Calditerricola satsumensis

Strain Designation: YMO81

Culture col. no.: DSM 45223, ATCC BAA-1462, JCM 14719, FERM P-18598

Strain history: T. Oshima YMO81.

NCBI tax ID(s): 1294024 (strain), 373054 (species)

SI-ID 403776

DSM 45223

Section

Calditerricola satsumensis YMO81 is an aerobe, thermophilic, Gram-negative bacterium that was isolated from high-temperature compost.

Gram-negative
rod-shaped
aerobe
thermophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Bacillaceae*
	Genus	*Calditerricola*
	Species	**Calditerricola satsumensis**
	Full Scientific Name (LPSN)	Calditerricola satsumensis Moriya et al. 2011

Synonym

"Caldaterra satsumae"

Information on morphological and physiological properties Morphology

[Ref.: #29672]	Gram stain	negative
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #29672]	Cell shape	rod-shaped

[Ref.: #69480]	Motility	yes Confidence in %94.031

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16167]

Culture medium

CYS MEDIUM WITH MODIFIED NACL CONCENTRATION (DSMZ Medium 1108a)

[Ref.: #16167]

Culture medium growth

[Ref.: #16167]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16167]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #16167]	growth	78 °C
[Ref.: #29672]	growth	56-83 °C
[Ref.: #29672]	optimum	78 °C
[Ref.: #67770]	growth	78 °C

[Ref.: #16167]	Temperature range	thermophilic
[Ref.: #29672]	Temperature range	hyperthermophilic
[Ref.: #29672]	Temperature range	thermophilic
[Ref.: #67770]	Temperature range	thermophilic
[Ref.: #69480]	Temperature range	thermophilic Confidence in %100

	pH	Kind of pH		pH
[Ref.: #29672]			optimum	7.5
[Ref.: #29672]			growth	6.6-6.9

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29672]

Oxygen tolerance

aerobe

[Ref.: #29672]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29672]		NaCl		growth	0.3-4.0	%
[Ref.: #29672]		NaCl		optimum	2	%

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16167]	Sample type/isolated from	high-temperature compost
[Ref.: #16167]	Geographic location (country and/or sea, region)	Kagoshima prefecture
[Ref.: #16167]	Country	Japan
[Ref.: #16167]	Country ISO 3 Code	JPN
[Ref.: #16167]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	High-temperature compost in the city of Kagoshima
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Biodegradation	#Composting
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB250968 (>99% sequence identity) for Calditerricola satsumensis from Microbeatlas

Aquatic Samples	309
Soil Samples	560
Animal Samples	812
Plant Samples	350
Total Samples	2031

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16167]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16167]	Calditerricola satsumensis gene for 16S rRNA, partial sequence	AB250968	1541	ENA	1294024 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Calditerricola satsumensis JCM 14719	GCA_001311905	contig	GenBank	1294024 tax ID
[Ref.: #66792]	Calditerricola satsumensis JCM 14719	GCA_014646935	contig	GenBank	373054 tax ID	*
[Ref.: #66792]	Calditerricola satsumensis JCM 14719	1294024.6	wgs	PATRIC	1294024 tax ID	*
[Ref.: #66792]	Calditerricola satsumensis strain JCM 14719	373054.3	wgs	PATRIC	373054 tax ID	*
[Ref.: #66792]	Calditerricola satsumensis JCM 14719	2728369700	draft	JGI IMG/M	1294024 tax ID	*

[Ref.: #16167]	GC-content	70 mol%	high performance liquid chromatography (HPLC)
[Ref.: #29672]	GC-content	70 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Calditerricola satsumensis JCM 14719 PATRIC: 1294024.6
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Calditerricola satsumensis JCM 14719 PATRIC: 1294024.6
[Ref.: #69480]	motile	yes	90.502	no
[Ref.: #69480]	gram-positive	yes	64.134	yes
[Ref.: #69480]	anaerobic	no	85.616	no
[Ref.: #69480]	aerobic	yes	86.57	yes
[Ref.: #69480]	halophile	no	88.341	no
[Ref.: #69480]	spore-forming	yes	89.022	yes
[Ref.: #69480]	glucose-util	yes	89.967	no
[Ref.: #69480]	flagellated	no	71.816	no
[Ref.: #69480]	thermophile	yes	100	no
[Ref.: #69480]	glucose-ferment	no	89.969	no

Availability in culture collections External links

[Ref.: #16167]

Culture collection no.

DSM 45223, ATCC BAA-1462, JCM 14719, FERM P-18598

[Ref.: #71207]

SI-ID 403776

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Calditerricola satsumensis gen. nov., sp. nov. and Calditerricola yamamurae sp. nov., extreme thermophiles isolated from a high-temperature compost.	Moriya T, Hikota T, Yumoto I, Ito T, Terui Y, Yamagishi A, Oshima T	Int J Syst Evol Microbiol	10.1099/ijs.0.018416-0	2010	*

References

#16167

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45223

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29672

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26058 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#71207

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID403776.1 )

#26058

IJSEM 631 2011 ( DOI 10.1099/ijs.0.018416-0 , PubMed 20400666 )

* These data were automatically processed and therefore are not curated

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Calditerricola satsumensis JCM 14719

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