[Ref.: #11231] |
Sample type/isolated from |
madura foot |
|
[Ref.: #119283] |
Sample type/isolated from |
Madura foot |
* marker position based on {}
|
|
Isolation sources categories |
#Host Body-Site |
#Limb |
#Foot |
#Infection |
#Disease |
- |
#Infection |
#Patient |
- |
#Host |
#Fungi |
- |
|
|
-
Information on genomic background e.g. entries in nucleic sequence databass Sequence information
|
16S Sequence information: |
Only first 5 entries are displayed. Click here to see all.Click here to see only first 5 entries. |
|
|
Sequence accession description |
Seq. accession number |
Sequence length (bp) |
Sequence database |
Associated NCBI tax ID |
|
[Ref.: #20218] |
Nocardia farcinica clone A8 16S ribosomal RNA gene, partial sequence |
AY262321 |
500 |
|
37329 tax ID |
* |
[Ref.: #20218] |
Nocardia farcinica strain ATCC 3318 16S ribosomal RNA gene, partial sequence |
DQ659906 |
1389 |
|
37329 tax ID |
* |
[Ref.: #20218] |
Nocardia farcinica culture collection CDC:W6977 16S ribosomal RNA gene, partial sequence |
GQ217499 |
1441 |
|
37329 tax ID |
* |
[Ref.: #20218] |
Nocardia farcinica strain W6977 16S ribosomal RNA gene, partial sequence |
GQ853065 |
1441 |
|
37329 tax ID |
* |
[Ref.: #20218] |
Nocardia farcinica strain ATCC 3318 clone 1 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence |
GU236387 |
640 |
|
37329 tax ID |
* |
[Ref.: #20218] |
Nocardia farcinica strain ATCC 3318 clone 2 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence |
GU236388 |
640 |
|
37329 tax ID |
* |
[Ref.: #20218] |
Nocardia farcinica strain ATCC 3318 clone 3 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence |
GU236389 |
644 |
|
37329 tax ID |
* |
[Ref.: #20218] |
Nocardia farcinica strain ATCC 3318 clone 4 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence |
GU236390 |
644 |
|
37329 tax ID |
* |
[Ref.: #20218] |
Nocardia farcinica 16S rRNA gene, strain ATCC 3318 |
X80595 |
1394 |
|
37329 tax ID |
* |
[Ref.: #20218] |
N.farcinica gene for 16S ribosomal RNA |
Z36936 |
1474 |
|
37329 tax ID |
* |
[Ref.: #20218] |
Nocardia farcinica strain CGMCC 4.1166 16S-23S ribosomal RNA intergenic spacer, complete sequence |
DQ518339 |
341 |
|
37329 tax ID |
* |
[Ref.: #20218] |
Nocardia farcinica strain DSM 43665 16S ribosomal RNA gene, partial sequence |
AY756551 |
606 |
|
37329 tax ID |
* |
[Ref.: #20218] |
Nocardia farcinica strain DSM 43665 16S ribosomal RNA gene, complete sequence |
AF430033 |
1494 |
|
37329 tax ID |
* |
[Ref.: #20218] |
Nocardia farcinica strain DSM 43665 note copy 1 16S-23S ribosomal RNA intergenic spacer, complete sequence |
AF536445 |
338 |
|
37329 tax ID |
* |
[Ref.: #20218] |
Nocardia farcinica strain DSM 43665 note copy 2 16S-23S ribosomal RNA intergenic spacer, complete sequence |
AF536446 |
334 |
|
37329 tax ID |
* |
[Ref.: #20218] |
Nocardia farcinica 16S rRNA gene, strain DSM43665T |
X80610 |
1465 |
|
37329 tax ID |
* |
[Ref.: #20218] |
Nocardia farcinica strain NRRL B-2089 16S ribosomal RNA gene, partial sequence |
JN041682 |
462 |
|
37329 tax ID |
* |
|
|
-
Availability in culture collections External links
[Ref.: #11231] |
Culture collection no. |
DSM 43665, ATCC 3318, DSM 43257, DSM 43578, IMRU 3318, NCIB 12058, NCTC 11134, JCM 3088, BCRC 13380, BCRC 13722, CBS 318.60, CCUG 10109, CCUG 27778, CCUG 48656, CECT 3053, CECT 4069, CGMCC 4.1166, CGMCC 4.1829, CIP 104775, IFM 0028, IFM 0284, IFO 15532, IMET 7377, IMSNU 21224, KCTC 9958, NBRC 15532, NCIMB 12058, NRRL B-2089, PCM 2173 |
[Ref.: #79939] |
SI-ID 70749
|
* |
|
Literature: |
|
Topic |
Title |
Authors |
Journal |
DOI |
Year |
|
Metabolism |
Nocardia panacis sp. nov., a novel actinomycete with antiphytopathogen activity isolated from the rhizosphere of Panax notoginseng. |
Hu JY, Li L, Peng G, Li YQ, Xu LH, Guan HL, Zhao LX, Miao CP |
Antonie Van Leeuwenhoek |
10.1007/s10482-019-01326-z |
2019 |
* |
Metabolism |
Characterization and functional expression of a rubber degradation gene of a Nocardia degrader from a rubber-processing factory. |
Linh DV, Huong NL, Tabata M, Imai S, Iijima S, Kasai D, Anh TK, Fukuda M |
J Biosci Bioeng |
10.1016/j.jbiosc.2016.11.012 |
2017 |
* |
Phylogeny |
Nocardia kroppenstedtii sp. nov., an actinomycete isolated from a lung transplant patient with a pulmonary infection. |
Jones AL, Fisher AJ, Mahida R, Gould K, Perry JD, Hannan MM, Judge EP, Brown R, Boagey K, Goodfellow M |
Int J Syst Evol Microbiol |
10.1099/ijs.0.048330-0 |
2013 |
* |
|
- References
-
#11231 |
Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ;
DSM 43665
|
-
-
-
-
-
#67770 |
Japan Collection of Microorganism (JCM) ; Curators of the JCM;
|
-
#68368 |
Automatically annotated from API 20E .
|
-
#68371 |
Automatically annotated from API 50CH acid .
|
-
#68379 |
Automatically annotated from API Coryne .
|
-
#68382 |
Automatically annotated from API zym .
|
-
#69479 |
João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.:
MicrobeAtlas 1.0 beta
.
|
-
-
-
#79939 |
Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.:
StrainInfo: A central database for resolving microbial strain identifiers
.
(
DOI 10.60712/SI-ID70749.1 )
|
-
#119283 |
Collection of Institut Pasteur ; Curators of the CIP;
CIP 104775
|
- * These data were automatically processed and therefore are not curated
Change proposal
Successfully sent
|
|