Name: Rheinheimera soli BD-d46
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 2461

Type strain:

Species: Rheinheimera soli

Strain Designation: BD-d46

Culture col. no.: DSM 19413, KCTC 22077, BCRC 80292

Strain history: <- CO Jeon, Gyungsang Univ.

NCBI tax ID(s): 443616 (species)

SI-ID 399860

DSM 19413

Section

Rheinheimera soli BD-d46 is a facultative aerobe, mesophilic, Gram-negative bacterium that was isolated from playground soil.

Gram-negative
motile
rod-shaped
facultative aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Chromatiales*
	Family	*Chromatiaceae*
	Genus	*Rheinheimera*
	Species	**Rheinheimera soli**
	Full Scientific Name (LPSN)	Rheinheimera soli Ryu et al. 2008

Synonym

"Pararheinheimera soli"

Information on morphological and physiological properties Morphology

[Ref.: #32433]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative

[Ref.: #32433]	Cell length	2-3.5 µm

[Ref.: #32433]	Cell width	0.9-1.5 µm

[Ref.: #32433]	Cell shape	rod-shaped

[Ref.: #32433]	Motility	yes

[Ref.: #32433]

Pigment production

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8093]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #8093]

Culture medium growth

[Ref.: #8093]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8093]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #8093]	growth	28 °C
[Ref.: #32433]	growth	15-35 °C
[Ref.: #32433]	optimum	25-30 °C
[Ref.: #67771]	growth	30 °C

[Ref.: #8093]	Temperature range	mesophilic
[Ref.: #32433]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #32433]			optimum	7-7.5
[Ref.: #32433]			growth	6.5-8

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32433]	Oxygen tolerance	facultative aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #32433]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32433]		NaCl		growth	0-4	%
[Ref.: #32433]		NaCl		optimum	0-1	%

[Ref.: #32433]

Observation

aggregates in chains

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32433]	arabinose ChEBI	+	carbon source
[Ref.: #32433]	esculin ChEBI	+	hydrolysis
[Ref.: #32433]	glucose ChEBI	+	carbon source
[Ref.: #32433]	maltose ChEBI	+	carbon source
[Ref.: #32433]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #32433]	nitrate ChEBI	+	reduction

	Enzyme	Enzyme activity	EC number
[Ref.: #32433]	alkaline phosphatase	+	3.1.3.1
[Ref.: #32433]	catalase	+	1.11.1.6
[Ref.: #32433]	cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8093]	Sample type/isolated from	playground soil
[Ref.: #8093]	Geographic location (country and/or sea, region)	Jinju
[Ref.: #8093]	Country	Republic of Korea
[Ref.: #8093]	Country ISO 3 Code	KOR
[Ref.: #8093]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From contaminated playground soil
[Ref.: #67771]	Geographic location (country and/or sea, region)	Jinju
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EF575565 (>99% sequence identity) for Pararheinheimera soli subclade from Microbeatlas

Aquatic Samples	62
Soil Samples	12
Animal Samples	33
Plant Samples	18
Total Samples	125

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8093]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #8093]	Rheinheimera sp. BD-d46 16S ribosomal RNA gene, partial sequence	EF575565	1489	ENA	443616 tax ID

[Ref.: #8093]	GC-content	49.2 mol%	high performance liquid chromatography (HPLC)
[Ref.: #32433]	GC-content	49.2 mol%

Availability in culture collections External links

[Ref.: #8093]

Culture collection no.

DSM 19413, KCTC 22077, BCRC 80292

[Ref.: #72005]

SI-ID 399860

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Rheinheimera mangrovi sp. nov., a bacterium isolated from mangrove sediment.	Zhang W, Zhu S, Cheng Y, Ding L, Li S, Peng N, He S	Int J Syst Evol Microbiol	10.1099/ijsem.0.004513	2020	*
Phylogeny	Rheinheimera sediminis sp. nov., a marine bacterium isolated from coastal sediment.	Yu Q, Qi Y, Zhang H, Pu J	Int J Syst Evol Microbiol	10.1099/ijsem.0.003917	2020	*
Phylogeny	Taxonomic description and genome sequence of Rheinheimera mesophila sp. nov., isolated from an industrial waste site.	Kumar A, Bajaj A, Mathan Kumar R, Kaur G, Kaur N, Kumar Singh N, Manickam N, Mayilraj S	Int J Syst Evol Microbiol	10.1099/ijsem.0.000471	2015	*
Phylogeny	Rheinheimera soli sp. nov., a gammaproteobacterium isolated from soil in Korea.	Ryu SH, Chung BS, Park M, Lee SS, Lee SS, Jeon CO	Int J Syst Evol Microbiol	10.1099/ijs.0.65489-0	2008	*

References

#8093

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19413

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32433

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28655 (see below)

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#72005

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID399860.1 )

#28655

IJSEM 2271 2008 ( DOI 10.1099/ijs.0.65489-0 , PubMed 18842839 )

* These data were automatically processed and therefore are not curated

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