Name: Rheinheimera chironomi K19414
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 2459

Type strain:

Species: Rheinheimera chironomi

Strain Designation: K19414

Culture col. no.: DSM 18694, LMG 23818

Strain history: <- M. Halpern, Dept. Biol., Faculty of Sci. and Sci. Education, Univ. Haifa, Oranim, Tivon, Israel; K19414 <- O. Landsberg, D. Raats and M. Halpern

NCBI tax ID(s): 358592 (species)

SI-ID 292553

LMG 23818, DSM 18694

Section

Rheinheimera chironomi K19414 is an aerobe, Gram-negative, motile bacterium that was isolated from chironomid egg mass which was sampled from Kishon River.

Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Chromatiales*
	Family	*Chromatiaceae*
	Genus	*Rheinheimera*
	Species	**Rheinheimera chironomi**
	Full Scientific Name (LPSN)	Rheinheimera chironomi Halpern et al. 2007

Synonym

"Pararheinheimera chironomi"

Information on morphological and physiological properties Morphology

[Ref.: #32078]	Gram stain	negative

[Ref.: #32078]	Cell length	1.7 µm

[Ref.: #32078]	Cell width	0.5 µm

[Ref.: #32078]	Cell shape	rod-shaped

[Ref.: #32078]	Motility	yes

[Ref.: #32078]

Pigment production

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7660]

Culture medium

HALF STRENGTH BACTO MARINE BROTH (DSMZ Medium 514a)

[Ref.: #7660]

Culture medium growth

[Ref.: #7660]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #7660]	growth	37 °C
[Ref.: #32078]	growth	04-40 °C
[Ref.: #32078]	optimum	33.5 °C

[Ref.: #7660]	Temperature range	mesophilic
[Ref.: #32078]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32078]

Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32078]		NaCl		growth	0-2	%
[Ref.: #32078]		NaCl		optimum	0.75	%

[Ref.: #32078]

Observation

aggregates in clumps

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32078]	alanine ChEBI	+	carbon source
[Ref.: #32078]	galactose ChEBI	+	carbon source
[Ref.: #32078]	glucose ChEBI	+	carbon source
[Ref.: #32078]	malate ChEBI	+	carbon source
[Ref.: #32078]	maltose ChEBI	+	carbon source
[Ref.: #32078]	methyl pyruvate ChEBI	+	carbon source
[Ref.: #32078]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #32078]	nitrate ChEBI	+	reduction
[Ref.: #32078]	succinate ChEBI	+	carbon source
[Ref.: #32078]	sucrose ChEBI	+	carbon source
[Ref.: #32078]	tween 40 ChEBI	+	carbon source
[Ref.: #32078]	tween 80 ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #32078]	acid phosphatase	+	3.1.3.2
[Ref.: #32078]	alkaline phosphatase	+	3.1.3.1
[Ref.: #32078]	cytochrome oxidase	+	1.9.3.1
[Ref.: #32078]	gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7660]	Sample type/isolated from	chironomid (Diptera; Chironomidae) egg mass which was sampled from Kishon River
[Ref.: #7660]	Geographic location (country and/or sea, region)	northern part, near Haifa
[Ref.: #7660]	Country	Israel
[Ref.: #7660]	Country ISO 3 Code	ISR
[Ref.: #7660]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#River (Creek)
#Host	#Arthropoda	#Insecta
#Host Body Product	#Urogenital tract	#Egg

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7660]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7660]	Rheinheimera chironomi strain K19414 16S ribosomal RNA gene, partial sequence	DQ298025	1499	ENA	358592 tax ID

[Ref.: #7660]

GC-content

49.9 mol%

Availability in culture collections External links

[Ref.: #7660]

Culture collection no.

DSM 18694, LMG 23818

[Ref.: #72003]

SI-ID 292553

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Rheinheimera riviphila sp. nov., isolated from a freshwater stream.	Chen WM, Chen WT, Young CC, Sheu SY	Arch Microbiol	10.1007/s00203-019-01657-5	2019	*
Phylogeny	Rheinheimera salexigens sp. nov., isolated from a fishing hook, and emended description of the genus Rheinheimera.	Hayashi K, Busse HJ, Golke J, Anderson J, Wan X, Hou S, Chain PSG, Prescott RD, Donachie SP	Int J Syst Evol Microbiol	10.1099/ijsem.0.002412	2017	*
Phylogeny	Rheinheimera arenilitoris sp. nov., isolated from seashore sand.	Park S, Park JM, Won SM, Jung YT, Yoon JH	Int J Syst Evol Microbiol	10.1099/ijs.0.067504-0	2014	*
Phylogeny	Rheinheimera soli sp. nov., a gammaproteobacterium isolated from soil in Korea.	Ryu SH, Chung BS, Park M, Lee SS, Lee SS, Jeon CO	Int J Syst Evol Microbiol	10.1099/ijs.0.65489-0	2008	*
Phylogeny	Rheinheimera chironomi sp. nov., isolated from a chironomid (Diptera; Chironomidae) egg mass.	Halpern M, Senderovich Y, Snir S	Int J Syst Evol Microbiol	10.1099/ijs.0.64927-0	2007	*

References

#7660

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18694

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32078

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28324 (see below)

#72003

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID292553.1 )

#28324

IJSEM 1872 2007 ( DOI 10.1099/ijs.0.64927-0 , PubMed 17684273 )

* These data were automatically processed and therefore are not curated

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