Name: Acinetobacter seohaensis SW-100
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 8138

Type strain:

Species: Acinetobacter seohaensis

Strain Designation: SW-100

Culture col. no.: CCUG 56483, KCTC 12260, DSM 16313, KTCC 12260, CIP 110591

Strain history: CIP <- 2013, KCTC <- JH Yoon, KRIBB

NCBI tax ID(s): 281376 (species)

Section

Acinetobacter seohaensis SW-100 is an aerobe, mesophilic bacterium that was isolated from sea water.

aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Pseudomonadales*
	Family	*Moraxellaceae*
	Genus	*Acinetobacter*
	Species	"Acinetobacter seohaensis"
	Full Scientific Name (LPSN)	Acinetobacter seohaensis Yoon et al. 2007

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.994

[Ref.: #69480]	Motility	no Confidence in %93.276

[Ref.: #6359]

Incubation period

1-2 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6359]

Culture medium

CASO AGAR (MERCK 105458) (DSMZ Medium 220)

[Ref.: #6359]

Culture medium growth

[Ref.: #6359]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6359]

Culture medium composition

expand / minimize

[Ref.: #33554]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #33554]

Culture medium growth

[Ref.: #33554]

Culture medium composition

expand / minimize

[Ref.: #115968]

Culture medium

CIP Medium 72

[Ref.: #115968]

Culture medium growth

[Ref.: #115968]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #6359]	growth	30 °C
[Ref.: #33554]	growth	30 °C
[Ref.: #60983]	growth	30-37 °C

[Ref.: #6359]	Temperature range	mesophilic
[Ref.: #33554]	Temperature range	mesophilic
[Ref.: #60983]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #60983]

Oxygen tolerance

aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.994

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6359]	Sample type/isolated from	sea water
[Ref.: #6359]	Geographic location (country and/or sea, region)	Yellow Sea, Wando-gun
[Ref.: #6359]	Country	Republic of Korea
[Ref.: #6359]	Country ISO 3 Code	KOR
[Ref.: #6359]	Continent	Asia

[Ref.: #60983]	Sample type/isolated from	Seawater
[Ref.: #60983]	Geographic location (country and/or sea, region)	Yellow Sea
[Ref.: #60983]	Country	Republic of Korea
[Ref.: #60983]	Country ISO 3 Code	KOR
[Ref.: #60983]	Continent	Asia

[Ref.: #115968]	Sample type/isolated from	Environment, Sea water
[Ref.: #115968]	Geographic location (country and/or sea, region)	Yellow sea
[Ref.: #115968]	Country	Republic of Korea
[Ref.: #115968]	Country ISO 3 Code	KOR
[Ref.: #115968]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY633608 (>99% sequence identity) for Acinetobacter seohaensis from Microbeatlas

Aquatic Samples	2684
Soil Samples	359
Animal Samples	2024
Plant Samples	164
Total Samples	5231

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #115968]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6359]	Acinetobacter seohaensis 16S ribosomal RNA gene, partial sequence	AY633608	1493	ENA	281376 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Acinetobacter seohaensis DSM 16313	GCA_018403785	contig	GenBank	281376 tax ID	*
[Ref.: #66792]	Acinetobacter seohaensis strain DSM 16313	281376.12	wgs	PATRIC	281376 tax ID	*

[Ref.: #6359]

GC-content

41.9 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Acinetobacter seohaensis strain DSM 16313 PATRIC: 281376.12
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Acinetobacter seohaensis strain DSM 16313 PATRIC: 281376.12
[Ref.: #69480]	motile	no	90.703	no
[Ref.: #69480]	gram-positive	no	98.102	no
[Ref.: #69480]	anaerobic	no	96.717	yes
[Ref.: #69480]	halophile	no	86.463	no
[Ref.: #69480]	spore-forming	no	96.673	no
[Ref.: #69480]	glucose-util	no	92.712	no
[Ref.: #69480]	flagellated	no	95.281	no
[Ref.: #69480]	aerobic	yes	89.369	yes
[Ref.: #69480]	thermophile	no	99.865	yes
[Ref.: #69480]	glucose-ferment	no	92.4	no

Availability in culture collections External links

[Ref.: #6359]

Culture collection no.

CCUG 56483, KCTC 12260, DSM 16313, KTCC 12260, CIP 110591

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Genome Sequence of Acinetobacter towneri Strain DSM 16313, Previously Known as the Proposed Type Strain of Acinetobacter seohaensis.	Maehana S, Kitasato H, Suzuki M	Microbiol Resour Announc	10.1128/MRA.00690-21	2021	*
Phylogeny	Acinetobacter marinus sp. nov. and Acinetobacter seohaensis sp. nov., isolated from sea water of the Yellow Sea in Korea.	Yoon JH, Kim IG, Oh TK	J Microbiol Biotechnol		2007	*

References

#6359

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16313

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#33554 ; Curators of the CIP;
#60983 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 56483

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#115968 Collection of Institut Pasteur ; Curators of the CIP; CIP 110591
* These data were automatically processed and therefore are not curated

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Acinetobacter seohaensis strain DSM 16313

Acinetobacter seohaensis strain DSM 16313

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