Name: Lutibaculum baratangense AMV1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 13878

Type strain:

Species: Lutibaculum baratangense

Strain Designation: AMV1

Culture col. no.: DSM 22728, CCUG 58046, KCTC 22669, NBRC 105799

Strain history: <- S. Shivaji, CCMB; AMV1 <- P. A. Kumar

NCBI tax ID(s): 1358440 (species)

SI-ID 411604

CCUG 58046

Section

Lutibaculum baratangense AMV1 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from mud volcano soil sample.

Gram-negative
motile
ovoid-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Tepidamorphaceae*
	Genus	*Lutibaculum*
	Species	**Lutibaculum baratangense**
	Full Scientific Name (LPSN)	Lutibaculum baratangense Anil Kumar et al. 2012

Information on morphological and physiological properties Morphology

[Ref.: #30107]	Gram stain	negative

[Ref.: #30107]	Cell length	1.75 µm

[Ref.: #30107]	Cell width	1 µm

[Ref.: #30107]	Cell shape	ovoid-shaped

[Ref.: #30107]	Motility	yes

[Ref.: #30107]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #30107]	growth	25-37 °C
[Ref.: #30107]	optimum	33.5 °C
[Ref.: #61568]	growth	30-37 °C

[Ref.: #30107]	Temperature range	mesophilic
[Ref.: #61568]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #30107]			optimum	8
[Ref.: #30107]			growth	07-09

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30107]	Oxygen tolerance	aerobe
[Ref.: #61568]	Oxygen tolerance	aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30107]		NaCl		growth	<4	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30107]	arabinose ChEBI	+	carbon source
[Ref.: #30107]	cellobiose ChEBI	+	carbon source
[Ref.: #30107]	galactose ChEBI	+	carbon source
[Ref.: #30107]	glucosamine ChEBI	+	carbon source
[Ref.: #30107]	glucose ChEBI	+	carbon source
[Ref.: #30107]	glutamate ChEBI	+	carbon source
[Ref.: #30107]	lactose ChEBI	+	carbon source
[Ref.: #30107]	maltose ChEBI	+	carbon source
[Ref.: #30107]	melibiose ChEBI	+	carbon source
[Ref.: #30107]	nitrate ChEBI	+	reduction
[Ref.: #30107]	phenylalanine ChEBI	+	carbon source
[Ref.: #30107]	ribose ChEBI	+	carbon source
[Ref.: #30107]	serine ChEBI	+	carbon source
[Ref.: #30107]	threonine ChEBI	+	carbon source
[Ref.: #30107]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #30107]		catalase	+	1.11.1.6
[Ref.: #30107]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16416]	Sample type/isolated from	mud volcano soil sample
[Ref.: #16416]	Geographic location (country and/or sea, region)	Middle Andaman, Baratang Island
[Ref.: #16416]	Country	India
[Ref.: #16416]	Country ISO 3 Code	IND
[Ref.: #16416]	Continent	Asia

[Ref.: #61568]	Sample type/isolated from	Soil,mud volcano
[Ref.: #61568]	Sampling date	2009-02-20
[Ref.: #61568]	Geographic location (country and/or sea, region)	Middle Andamans,Baratang Island
[Ref.: #61568]	Country	India
[Ref.: #61568]	Country ISO 3 Code	IND
[Ref.: #61568]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Mud (Sludge)
#Environmental	#Terrestrial	#Soil
#Environmental	#Terrestrial	#Volcanic

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FN297835 (>99% sequence identity) for Lutibaculum baratangense subclade from Microbeatlas

Aquatic Samples	444
Soil Samples	217
Animal Samples	381
Plant Samples	52
Total Samples	1094

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16416]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16416]	Lutibaculum baratangense AMV1 partial 16S rRNA gene, type strain AMV1T	FN297835	1455	ENA	631454 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Lutibaculum baratangense AMV1	GCA_000496075	contig	GenBank	631454 tax ID	*
[Ref.: #66792]	Lutibaculum baratangense AMV1	2568526534	draft	JGI IMG/M	631454 tax ID	*

[Ref.: #16416]	GC-content	70.5 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #30107]	GC-content	70.5 mol%

Availability in culture collections External links

[Ref.: #16416]

Culture collection no.

DSM 22728, CCUG 58046, KCTC 22669, NBRC 105799

[Ref.: #83053]

SI-ID 411604

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Lutibaculum pontilimi sp. nov., isolated from a tidal mudflat and emended description of the genus Lutibaculum.	Lee SD	Int J Syst Evol Microbiol	10.1099/ijsem.0.003163	2018	*
Phylogeny	Butyratibacter algicola gen. nov., sp. nov., a marine bacterium from the culture broth of Picochlorum sp. 122.	Wang G, Wang Y, Su H, Wu H, Li T, Liang J, Huang W, Xiang W, Yu K	Int J Syst Evol Microbiol	10.1099/ijsem.0.002081	2017	*
Phylogeny	Microbaculum marinum gen. nov., sp. nov., isolated from deep seawater.	Su Y, Han S, Wang R, Yu X, Fu G, Chen C, Zhang C, Li Y, Sun C, Wu M	Int J Syst Evol Microbiol	10.1099/ijsem.0.001647	2017	*
Phylogeny	Lutibaculum baratangense gen. nov., sp. nov., a proteobacterium isolated from a mud volcano.	Kumar PA, Srinivas TNR, Manasa P, Madhu S, Shivaji S	Int J Syst Evol Microbiol	10.1099/ijs.0.036350-0	2011	*
Phylogeny	Lutibaculum baratangense gen. nov., sp. nov., a novel proteobacterium isolated from a mud volcano, Andamans, India.	Kumar AP, Srinivas TNR, Madhu S, Shivaji S	Int J Syst Evol Microbiol	10.1099/ijs.0.027094-0	2010	*

References

#16416

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22728

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30107

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26463 (see below)

#61568 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 58046

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#83053

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID411604.1 )

#26463

IJSEM 2025 2012 ( DOI 10.1099/ijs.0.029488-0 , PubMed 22021574 )

* These data were automatically processed and therefore are not curated

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