Name: Catenovulum agarivorans DSM 23111
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 500

Type strain:

Species: Catenovulum agarivorans

Culture col. no.: DSM 23111, CGMCC 1.10245, JCM 16580, YM 01

Strain history: X.-H. Zhang YM01 <-- Y. Wang YM01.

NCBI tax ID(s): 1172192 (species)

SI-ID 408154

DSM 23111

Section

Catenovulum agarivorans DSM 23111 is a mesophilic bacterium that was isolated from seawater.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Alteromonadaceae*
	Genus	*Catenovulum*
	Species	**Catenovulum agarivorans**
	Full Scientific Name (LPSN)	Catenovulum agarivorans Yan et al. 2011

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16702]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #16702]

Culture medium growth

[Ref.: #16702]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16702]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #16702]			growth	28 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #16702]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: MK-7

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16702]	Sample type/isolated from	seawater
[Ref.: #16702]	Geographic location (country and/or sea, region)	Yellow Sea, coastal region of Qingdao (36° 04' N 120° 19' E)
[Ref.: #16702]	Country	China
[Ref.: #16702]	Country ISO 3 Code	CHN
[Ref.: #16702]	Continent	Asia
[Ref.: #16702]	Geographic location	36.0667°/120.3170°

[Ref.: #67770]	Sample type/isolated from	Seawater of Yellow Sea
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence GQ262000 (>99% sequence identity) for Alteromonadaceae from Microbeatlas

Aquatic Samples	432
Soil Samples	20
Animal Samples	70
Plant Samples	1
Total Samples	523

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16702]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16702]	Catenovulum agarivorans YM01 16S ribosomal RNA gene, partial sequence	GQ262000	1379	ENA	659495 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Catenovulum agarivorans YM01	GCA_000281085	scaffold	GenBank	659495 tax ID

[Ref.: #16702]	GC-content	44.8 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67770]	GC-content	44.8 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Catenovulum agarivorans YM01 YM01 NCBI: GCA_000281085.1
[Ref.: #69480]	motile	yes	86.569	no
[Ref.: #69480]	flagellated	yes	80.506	no
[Ref.: #69480]	gram-positive	no	99.206	no
[Ref.: #69480]	anaerobic	no	99.098	no
[Ref.: #69480]	aerobic	yes	83.537	no
[Ref.: #69480]	halophile	no	64.976	no
[Ref.: #69480]	spore-forming	no	94.127	no
[Ref.: #69480]	thermophile	no	98.391	yes
[Ref.: #69480]	glucose-util	yes	88.681	no
[Ref.: #69480]	glucose-ferment	no	73.601	no

Availability in culture collections External links

[Ref.: #16702]

Culture collection no.

DSM 23111, CGMCC 1.10245, JCM 16580, YM 01

[Ref.: #70179]

SI-ID 408154

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Saccharobesus litoralis gen. nov., sp. nov., a novel alginate-degrading bacterium isolated from the surface of intertidal algal turf.	Amrina RA, Furusawa G, Lau NS	Int J Syst Evol Microbiol	10.1099/ijsem.0.005087	2021	*
Phylogeny	Algibacillus agarilyticus gen. nov., sp. nov., isolated from the surface of the red algae Gelidium amansii.	Meng X, Chang YQ, Wang H, Du ZJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.004558	2020	*
Enzymology	Characterization and overexpression of a glycosyl hydrolase family 16 beta-agarase YM01-1 from marine bacterium Catenovulum agarivorans YM01(T).	An K, Shi X, Cui F, Cheng J, Liu N, Zhao X, Zhang XH	Protein Expr Purif	10.1016/j.pep.2017.10.002	2017	*
Phylogeny	Catenovulum sediminis sp. nov., isolated from coastal sediment.	Shi MJ, Du WJ, Wang C, Chen GJ, Du ZJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.002219	2017	*
Phylogeny	Catenovulum maritimus sp. nov., a novel agarolytic gammaproteobacterium isolated from the marine alga Porphyra yezoensis Ueda (AST58-103), and emended description of the genus Catenovulum.	Li DQ, Zhou YX, Liu T, Chen GJ, Du ZJ	Antonie Van Leeuwenhoek	10.1007/s10482-015-0495-2	2015	*
Genetics	Overexpression and characterization of a novel thermostable beta-agarase YM01-3, from marine bacterium Catenovulum agarivorans YM01(T).	Cui F, Dong S, Shi X, Zhao X, Zhang XH	Mar Drugs	10.3390/md12052731	2014	*
Phylogeny	Isolation and characterization of a novel agar-degrading marine bacterium, Gayadomonas joobiniege gen, nov, sp. nov., from the Southern Sea, Korea.	Chi WJ, Park JS, Kwak MJ, Kim JF, Chang YK, Hong SK	J Microbiol Biotechnol	10.4014/jmb.1308.08007	2013	*
Genetics	Genome sequence of the thermostable-agarase-producing marine bacterium Catenovulum agarivorans YM01(T), which reveals the presence of a series of agarase-encoding genes.	Shi X, Yu M, Yan S, Dong S, Zhang XH	J Bacteriol	10.1128/JB.01283-12	2012	*
Phylogeny	Catenovulum agarivorans gen. nov., sp. nov., a peritrichously flagellated, chain-forming, agar-hydrolysing gammaproteobacterium from seawater.	Yan S, Yu M, Wang Y, Shen C, Zhang XH	Int J Syst Evol Microbiol	10.1099/ijs.0.027565-0	2011	*

References

#16702

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23111

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#70179

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID408154.1 )

* These data were automatically processed and therefore are not curated

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Catenovulum agarivorans YM01 YM01

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