Name: Alishewanella jeotgali MS1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 442

Type strain:

Species: Alishewanella jeotgali

Strain Designation: MS1

Culture col. no.: DSM 24035, JCM 15561, KCTC 22429, CGMCC 1.10666

Strain history: <- JW Bae, KRIBB

NCBI tax ID(s): 1129374 (strain), 545533 (species)

SI-ID 364110

JCM 15561, KCTC 22429, LMG 26133, DSM 24035

Section

Alishewanella jeotgali MS1 is a facultative anaerobe, mesophilic, Gram-negative bacterium that was isolated from gajami sikhae , a traditional fermented Korean food.

Gram-negative
motile
rod-shaped
facultative anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Chromatiales*
	Family	*Chromatiaceae*
	Genus	*Alishewanella*
	Species	**Alishewanella jeotgali**
	Full Scientific Name (LPSN)	Alishewanella jeotgali Kim et al. 2009

Information on morphological and physiological properties Morphology

[Ref.: #29144]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.938

[Ref.: #29144]	Cell length	2-6 µm

[Ref.: #29144]	Cell width	1 µm

[Ref.: #29144]	Cell shape	rod-shaped

[Ref.: #29144]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %96.099

Multimedia content

[Ref.: #17482]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #17482]

Culture medium

REACTIVATION WITH LIQUID MEDIUM (DSMZ Medium 535b)

[Ref.: #17482]

Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

		Temperature
[Ref.: #17482]	growth	28 °C
[Ref.: #29144]	growth	04-40 °C
[Ref.: #29144]	optimum	37 °C
[Ref.: #67770]	growth	37 °C
[Ref.: #67771]	growth	30 °C

[Ref.: #17482]	Temperature range	mesophilic
[Ref.: #29144]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #29144]			optimum	8
[Ref.: #29144]			growth	6.5-9.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29144]	Oxygen tolerance	facultative anaerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.983

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29144]		NaCl		growth	1.0-2.0	%
[Ref.: #29144]		NaCl		optimum	1	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29144]	esculin ChEBI	+	hydrolysis
[Ref.: #29144]	glucose ChEBI	+	carbon source
[Ref.: #29144]	glycogen ChEBI	+	carbon source
[Ref.: #29144]	maltose ChEBI	+	carbon source
[Ref.: #29144]	nitrate ChEBI	+	reduction
[Ref.: #29144]	sucrose ChEBI	+	carbon source
[Ref.: #29144]	trehalose ChEBI	+	carbon source

	Enzyme	Enzyme activity	EC number
[Ref.: #29144]	acid phosphatase	+	3.1.3.2
[Ref.: #29144]	alkaline phosphatase	+	3.1.3.1
[Ref.: #29144]	catalase	+	1.11.1.6
[Ref.: #29144]	cytochrome oxidase	+	1.9.3.1
[Ref.: #29144]	gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17482]	Sample type/isolated from	gajami sikhae (jeotgal), a traditional fermented Korean food
[Ref.: #17482]	Country	Republic of Korea
[Ref.: #17482]	Country ISO 3 Code	KOR
[Ref.: #17482]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Gajami sikhae (jeotgal), a traditional Korean fermented seafood

[Ref.: #67771]	Sample type/isolated from	From Flatfish Sik Hae
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Food production	#Seafood
#Engineered	#Food production	#Fermented

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EU817498 (>99% sequence identity) for Alishewanella jeotgali from Microbeatlas

Aquatic Samples	197
Soil Samples	7
Animal Samples	113
Plant Samples	3
Total Samples	320

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #17482]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #17482]	Alishewanella jeotgali strain MS1 16S ribosomal RNA gene, partial sequence	EU817498	1490	ENA	1129374 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Alishewanella jeotgali KCTC 22429	GCA_000245735	contig	GenBank	1129374 tax ID
[Ref.: #66792]	Alishewanella jeotgali KCTC 22429	1129374.4	wgs	PATRIC	1129374 tax ID	*
[Ref.: #66792]	Alishewanella jeotgali KCTC 22429	2513237355	draft	JGI IMG/M	1129374 tax ID	*

[Ref.: #17482]	GC-content	53.6 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #29144]	GC-content	53.6 mol%
[Ref.: #67770]	GC-content	50.66 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Alishewanella jeotgali KCTC 22429 PATRIC: 1129374.4
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Alishewanella jeotgali KCTC 22429 PATRIC: 1129374.4
[Ref.: #69480]	motile	yes	89.607	yes
[Ref.: #69480]	flagellated	yes	74.401	no
[Ref.: #69480]	gram-positive	no	99.163	yes
[Ref.: #69480]	anaerobic	no	95.486	yes
[Ref.: #69480]	halophile	no	90.85	yes
[Ref.: #69480]	spore-forming	no	94.514	no
[Ref.: #69480]	glucose-util	yes	85.669	yes
[Ref.: #69480]	aerobic	yes	85.062	no
[Ref.: #69480]	thermophile	no	98.981	yes
[Ref.: #69480]	glucose-ferment	no	78.795	no

Availability in culture collections External links

[Ref.: #17482]

Culture collection no.

DSM 24035, JCM 15561, KCTC 22429, CGMCC 1.10666

[Ref.: #70121]

SI-ID 364110

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Genome sequence of extracellular-protease-producing Alishewanella jeotgali isolated from traditional Korean fermented seafood.	Jung J, Chun J, Park W	J Bacteriol	10.1128/JB.00153-12	2012	*
Phylogeny	Alishewanella jeotgali sp. nov., isolated from traditional fermented food, and emended description of the genus Alishewanella.	Kim MS, Roh SW, Nam YD, Chang HW, Kim KH, Jung MJ, Choi JH, Park EJ, Bae JW	Int J Syst Evol Microbiol	10.1099/ijs.0.007260-0	2009	*

References

#17482

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 24035

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29144

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25568 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#70121

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID364110.1 )

#25568

IJSEM 2313 2009 ( DOI 10.1099/ijs.0.007260-0 , PubMed 19620373 )

* These data were automatically processed and therefore are not curated

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Alishewanella jeotgali KCTC 22429

Alishewanella jeotgali KCTC 22429

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