Name: Mycobacterium kumamotonense DSM 45093
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 8555

Type strain:

Species: Mycobacterium kumamotonense

Culture col. no.: DSM 45093, CCUG 51961, GTC 2729, JCM 13453, CST 7247

Strain history: T. Ezaki CST 7247.

NCBI tax ID(s): 354243 (species)

SI-ID 297259

CCUG 51961, JCM 13453, DSM 45093

Other strains from Mycobacterium kumamotonense

M. kumamotonense CCUG 55375
M. kumamotonense CCUG 56547

Section

Mycobacterium kumamotonense DSM 45093 is an aerobe, mesophilic human pathogen that was isolated from sputa of a 57-year old Japanes woman.

aerobe
human pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Mycobacteriales*
	Family	*Mycobacteriaceae*
	Genus	*Mycobacterium*
	Species	**Mycobacterium kumamotonense**
	Full Scientific Name (LPSN)	Mycobacterium kumamotonense Masaki et al. 2007

Synonym

Mycolicibacter kumamotonensis

Information on morphological and physiological properties Morphology

[Ref.: #59384]

Incubation period

7-10 days

Multimedia content

[Ref.: #12335]

Caption:

Medium 645 37°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #12335]

Culture medium

MIDDLEBROOK MEDIUM (DSMZ Medium 645)

[Ref.: #12335]

Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #12335]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #12335]	growth	37 °C
[Ref.: #59384]	growth	35 °C
[Ref.: #67770]	growth	35 °C

[Ref.: #12335]	Temperature range	mesophilic
[Ref.: #59384]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #59384]	Oxygen tolerance	aerobe
[Ref.: #59384]	Oxygen tolerance	microaerophile

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #12335]	Sample type/isolated from	sputa of a 57-year old Japanes woman
[Ref.: #12335]	Geographic location (country and/or sea, region)	Kumamoto Prefecture
[Ref.: #12335]	Country	Japan
[Ref.: #12335]	Country ISO 3 Code	JPN
[Ref.: #12335]	Continent	Asia

[Ref.: #59384]	Sample type/isolated from	Human sputum,57-yr-old female Japanese
[Ref.: #59384]	Sampling date	2001
[Ref.: #59384]	Geographic location (country and/or sea, region)	Kumamoto
[Ref.: #59384]	Country	Japan
[Ref.: #59384]	Country ISO 3 Code	JPN
[Ref.: #59384]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Sputum of a 57-year-old Japanese woman with abnormal shadow by indirect X-ray
* marker position based on {}

Isolation sources categories

#Host	#Human	#Female
#Host Body Product	#Fluids	#Sputum

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB239925 (>99% sequence identity) for Mycolicibacter from Microbeatlas

Aquatic Samples	718
Soil Samples	1498
Animal Samples	445
Plant Samples	80
Total Samples	2741

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #12335]	Pathogenicity (human)	yes, in single cases
[Ref.: #12335]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #12335]	Mycobacterium kumamotonense gene for 16S rRNA, partial sequence, strain:CST7274 (= GTC2729)	AB239925	1434	ENA	354243 tax ID
[Ref.: #20218]	Mycobacterium kumamotonense strain CCUG 51961 16S ribosomal RNA gene, partial sequence	EU191911	471	ENA	354243 tax ID	*
[Ref.: #20218]	Mycobacterium kumamotonense strain DSM45093 16S ribosomal RNA gene, partial sequence	JN571176	479	ENA	354243 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Mycolicibacter kumamotonensis CST 7247	GCA_010093495	scaffold	GenBank	354243 tax ID
[Ref.: #67770]	Mycolicibacter kumamotonensis DSM 45093	GCA_002086285	contig	GenBank	354243 tax ID
[Ref.: #66792]	Mycobacterium kumamotonense strain DSM 45093	354243.4	wgs	PATRIC	354243 tax ID	*
[Ref.: #66792]	Mycolicibacter kumamotonensis strain CST 7247	354243.11	wgs	PATRIC	354243 tax ID	*

[Ref.: #12335]	GC-content	51.19 mol%
[Ref.: #67770]	GC-content	67.4 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67770]	GC-content	68.1 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Mycobacterium kumamotonense strain DSM 45093 PATRIC: 354243.4
[Ref.: #69480]	gram-positive	yes	94.522	no
[Ref.: #69480]	anaerobic	no	99.349	no
[Ref.: #69480]	halophile	no	91.48	no
[Ref.: #69480]	spore-forming	no	87.855	no
[Ref.: #69480]	glucose-util	yes	53.116	no
[Ref.: #69480]	motile	no	95.014	no
[Ref.: #69480]	flagellated	no	98.873	no
[Ref.: #69480]	aerobic	yes	90.101	no
[Ref.: #69480]	thermophile	no	97.043	yes
[Ref.: #69480]	glucose-ferment	no	92.177	no

Availability in culture collections External links

[Ref.: #12335]

Culture collection no.

DSM 45093, CCUG 51961, GTC 2729, JCM 13453, CST 7247

[Ref.: #77938]

SI-ID 297259

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Mycobacterium kumamotonense Sp. Nov. recovered from clinical specimen and the first isolation report of Mycobacterium arupense in Japan: Novel slowly growing, nonchromogenic clinical isolates related to Mycobacterium terrae complex.	Masaki T, Ohkusu K, Hata H, Fujiwara N, Iihara H, Yamada-Noda M, Nhung PH, Hayashi M, Asano Y, Kawamura Y, Ezaki T	Microbiol Immunol	10.1111/j.1348-0421.2006.tb03865.x	2006	*

References

#12335

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45093

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#59384 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 51961

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#77938

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID297259.1 )

* These data were automatically processed and therefore are not curated

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Mycobacterium kumamotonense strain DSM 45093

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