Name: Mycobacterium arosiense T1921
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 8554

Type strain:

Species: Mycobacterium arosiense

Strain Designation: T1921

Culture col. no.: DSM 45069, ATCC BAA-1401

Strain history: <- D. Bang <- Int. Ref. Lab. of Mycobacteriology, Denmark

NCBI tax ID(s): 1265311 (strain), 425468 (species)

SI-ID 407308

DSM 45069

Section

Mycobacterium arosiense T1921 is a mesophilic bacterium that was isolated from bone biopsy from clavicle of a child with osteomyelitis.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Mycobacteriales*
	Family	*Mycobacteriaceae*
	Genus	*Mycobacterium*
	Species	**Mycobacterium arosiense**
	Full Scientific Name (LPSN)	Mycobacterium arosiense Bang et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %99.999

[Ref.: #69480]	Motility	no Confidence in %95.355

Multimedia content

[Ref.: #12312]

Caption:

Medium 645 37°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #12312]

Culture medium

MIDDLEBROOK MEDIUM (DSMZ Medium 645)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #12312]			growth	37 °C

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Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Ability of spore formation

no Confidence in %99.975

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #12312]	Sample type/isolated from	bone biopsy from clavicle of a child with osteomyelitis
[Ref.: #12312]	Geographic location (country and/or sea, region)	Aarhus
[Ref.: #12312]	Country	Denmark
[Ref.: #12312]	Country ISO 3 Code	DNK
[Ref.: #12312]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Infection	#Patient	#Biopsy
#Infection	#Patient	-
#Host Body-Site	#Other	#Bone
#Host	#Human	#Child

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence GQ153274 (>99% sequence identity) for Mycobacterium from Microbeatlas

Aquatic Samples	4789
Soil Samples	12779
Animal Samples	3677
Plant Samples	2833
Total Samples	24078

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #12312]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #12312]	Mycobacterium arosiense strain T1921 16S ribosomal RNA gene, partial sequence	EF054881	1493	ENA	1265311 tax ID
[Ref.: #20218]	Mycobacterium arosiense strain T1921 16S-23S ribosomal RNA intergenic spacer, partial sequence	EU370533	315	ENA	1265311 tax ID	*
[Ref.: #20218]	Mycobacterium arosiense strain ATCC BAA-1401 16S ribosomal RNA gene, partial sequence	GQ153274	1495	ENA	1265311 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Mycobacterium arosiense ATCC BAA-1401 = DSM 45069	GCA_002086125	contig	GenBank	1265311 tax ID	*
[Ref.: #66792]	Mycobacterium arosiense ATCC BAA-1401 = DSM 45069 strain DSM 45069	1265311.3	wgs	PATRIC	1265311 tax ID	*
[Ref.: #66792]	Mycobacterium arosiense ATCC BAA-1401 = DSM 45069	2865520462	draft	JGI IMG/M	1265311 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Mycobacterium arosiense ATCC BAA-1401 = DSM 45069 strain DSM 45069 PATRIC: 1265311.3
[Ref.: #69481]	spore-forming	no	87	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Mycobacterium arosiense ATCC BAA-1401 = DSM 45069 strain DSM 45069 PATRIC: 1265311.3
[Ref.: #69480]	motile	no	95.015	no
[Ref.: #69480]	gram-positive	yes	86.188	no
[Ref.: #69480]	anaerobic	no	99.382	no
[Ref.: #69480]	aerobic	yes	90.662	no
[Ref.: #69480]	halophile	no	93.032	no
[Ref.: #69480]	spore-forming	no	83.434	no
[Ref.: #69480]	glucose-util	yes	67.552	no
[Ref.: #69480]	flagellated	no	98.704	no
[Ref.: #69480]	thermophile	no	97.139	no
[Ref.: #69480]	glucose-ferment	no	92.238	no

Availability in culture collections External links

[Ref.: #12312]

Culture collection no.

DSM 45069, ATCC BAA-1401

[Ref.: #77937]

SI-ID 407308

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Mycobacterium arosiense sp. nov., a slowly growing, scotochromogenic species causing osteomyelitis in an immunocompromised child.	Bang D, Herlin T, Stegger M, Andersen AB, Torkko P, Tortoli E, Thomsen VO	Int J Syst Evol Microbiol	10.1099/ijs.0.65503-0	2008	*

References

#12312

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45069

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#77937

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID407308.1 )

* These data were automatically processed and therefore are not curated

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Mycobacterium arosiense ATCC BAA-1401 = DSM 45069 strain DSM 45069

Mycobacterium arosiense ATCC BAA-1401 = DSM 45069 strain DSM 45069

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