Name: Mycobacterium palustre E170-1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 8496

Type strain:

Species: Mycobacterium palustre

Strain Designation: E170-1, E846

Culture col. no.: DSM 44572, ATCC BAA-377, CIP 107748

Strain history: CIP <- 2002, DSMZ <- P. Torkko, National Public Health Inst., Helsinki, Finland: strain E846 <- E. Livanainen

NCBI tax ID(s): 153971 (species)

SI-ID 100789

ATCC BAA-377, DSM 44572, CIP 107748, VTT E-062960

Other strains from Mycobacterium palustre

M. palustre 3189/96, 629, DSM 44571
M. palustre CCUG 50994
M. palustre CCUG 50995

Section

Mycobacterium palustre E170-1 is a mesophilic human pathogen that was isolated from a stream water.

human pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Mycobacteriales*
	Family	*Mycobacteriaceae*
	Genus	*Mycobacterium*
	Species	**Mycobacterium palustre**
	Full Scientific Name (LPSN)	Mycobacterium palustre Torkko et al. 2002

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #121517]	Cell shape	rod-shaped

[Ref.: #121517]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %91.381

Information on culture and growth conditions Culture and growth conditions

[Ref.: #11768]

Culture medium

MIDDLEBROOK MEDIUM (DSMZ Medium 645)

[Ref.: #11768]

Culture medium growth

[Ref.: #11768]

Culture medium link

Medium recipe at MediaDive

[Ref.: #11768]

Culture medium composition

expand / minimize

[Ref.: #36372]

Culture medium

MEDIUM 93 - for Mycobacterium avium subsp. sylvaticum

[Ref.: #36372]

Culture medium growth

[Ref.: #36372]

Culture medium composition

expand / minimize

[Ref.: #121517]

Culture medium

CIP Medium 93

[Ref.: #121517]

Culture medium growth

[Ref.: #121517]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #11768]		growth	37 °C
[Ref.: #36372]		growth	37 °C
[Ref.: #121517]		growth	22-45 °C
[Ref.: #121517]	no	growth	10 °C

[Ref.: #11768]	Temperature range	mesophilic
[Ref.: #36372]	Temperature range	mesophilic
[Ref.: #121517]	Temperature range	psychrophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %90
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.827

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #121517]	hippurate ChEBI	-	hydrolysis
[Ref.: #121517]	nitrate ChEBI	-	reduction
[Ref.: #121517]	nitrite ChEBI	-	reduction

	Metabolite production	Metabolite	Production
[Ref.: #121517]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #121517]	beta-galactosidase	-	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #121517]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #121517]	gamma-glutamyltransferase	+	2.3.2.2
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #121517]	oxidase	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #121517]	urease	+	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #121517]	10620	-	-	+	+	-	+	-	-	-	-	+	+	-	-	-	+	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #11768]	Sample type/isolated from	a stream water
[Ref.: #11768]	Geographic location (country and/or sea, region)	Karstula
[Ref.: #11768]	Country	Finland
[Ref.: #11768]	Country ISO 3 Code	FIN
[Ref.: #11768]	Continent	Europe

[Ref.: #121517]	Sample type/isolated from	Environment, Stream water
[Ref.: #121517]	Country	Finland
[Ref.: #121517]	Country ISO 3 Code	FIN
[Ref.: #121517]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #11768]	Pathogenicity (human)	yes
[Ref.: #11768]	Pathogenicity (animal)	yes
[Ref.: #11768]	Biosafety level	2	Risk group (German classification) According to TRBA 466
[Ref.: #121517]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #11768]	Mycobacterium palustre 16S rRNA gene and internal transcribed spacer 1 (ITS1), strain E846	AJ308603	1823	ENA	153971 tax ID
[Ref.: #20218]	Mycobacterium palustre strain DSM 44572 16S ribosomal RNA gene, partial sequence	AY943210	515	ENA	153971 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Mycobacterium palustre DSM 44572	GCA_002101785	contig	GenBank	153971 tax ID	*
[Ref.: #66792]	Mycobacterium palustre strain DSM 44572	153971.3	wgs	PATRIC	153971 tax ID	*
[Ref.: #66792]	Mycobacterium palustre DSM 44572	2865389921	draft	JGI IMG/M	153971 tax ID	*
[Ref.: #66792]	Mycobacterium palustre DSM 44572	GCA_025821485	scaffold	GenBank	153971 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Mycobacterium palustre strain DSM 44572 PATRIC: 153971.3
[Ref.: #69481]	spore-forming	no	90	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Mycobacterium palustre strain DSM 44572 PATRIC: 153971.3
[Ref.: #69480]	motile	no	94.756	no
[Ref.: #69480]	gram-positive	yes	87.773	no
[Ref.: #69480]	anaerobic	no	98.951	no
[Ref.: #69480]	aerobic	yes	86.623	no
[Ref.: #69480]	halophile	no	94.611	no
[Ref.: #69480]	spore-forming	no	84.214	no
[Ref.: #69480]	thermophile	no	97.67	no
[Ref.: #69480]	glucose-util	yes	66.11	no
[Ref.: #69480]	flagellated	no	98.908	no
[Ref.: #69480]	glucose-ferment	no	91.004	no

Availability in culture collections External links

[Ref.: #11768]

Culture collection no.

DSM 44572, ATCC BAA-377, CIP 107748

[Ref.: #77890]

SI-ID 100789

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Mycobacterium palustre sp. nov., a potentially pathogenic, slowly growing mycobacterium isolated from clinical and veterinary specimens and from Finnish stream waters.	Torkko P, Suomalainen S, Iivanainen E, Tortoli E, Suutari M, Seppanen J, Paulin L, Katila ML	Int J Syst Evol Microbiol	10.1099/00207713-52-5-1519	2002	*

References

#11768

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44572

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#36372 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68382

Automatically annotated from API zym .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#77890

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID100789.1 )

#121517 Collection of Institut Pasteur ; Curators of the CIP; CIP 107748
* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Mycobacterium palustre in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Mycobacterium palustre strain DSM 44572

Mycobacterium palustre strain DSM 44572

Change proposal

Change proposal