Name: Mycobacterium xenopi 1482
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 8370

Type strain:

Species: Mycobacterium xenopi

Strain Designation: 1482, 14 035 0001

Culture col. no.: DSM 43995, ATCC 19250, NCTC 10042, TMC 1482, JCM 15661, CCUG 28011, CCUG 31306, CIP 104035, CNCTC 7303

Strain history: CIP <- 1994, V. Vincent, Inst. Pasteur, Paris, France: strain 14 035 0001 <- ATCC <- TMC: strain 1482 <- NCTC <- H. Schwabacher

NCBI tax ID(s): 1789 (species)

SI-ID 44545

ATCC 19250, CCUG 28011, NCTC 10042, CCUG 31306, CIP 104035, DSM 43995, CNCTC 7303, JCM 15661

Other strains from Mycobacterium xenopi

M. xenopi DSM 44168, ATCC 19970
M. xenopi DSM 44169, ATCC 19971
M. xenopi CCUG 29060, ATCC 19276

Section

Mycobacterium xenopi 1482 is a thermophilic, rod-shaped human pathogen that was isolated from adult female toad, Xenopus laevis.

rod-shaped
human pathogen
thermophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Mycobacteriales*
	Family	*Mycobacteriaceae*
	Genus	*Mycobacterium*
	Species	**Mycobacterium xenopi**
	Full Scientific Name (LPSN)	Mycobacterium xenopi corrig. Schwabacher 1959 (Approved Lists 1980)

Synonym

Mycobacterium xenopei

Information on morphological and physiological properties Morphology

[Ref.: #123974]	Cell shape	rod-shaped

[Ref.: #123974]	Motility	no

Multimedia content

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Caption:

Medium 645 45°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

MIDDLEBROOK MEDIUM (DSMZ Medium 645)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

LÖWENSTEIN-JENSEN MEDIUM (DSMZ Medium 354)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

MEDIUM 55 - for Mycobacterium

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Culture medium growth

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Culture medium

CIP Medium 55

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #11444]		growth	45 °C
[Ref.: #34458]		growth	37 °C
[Ref.: #67770]		growth	37 °C
[Ref.: #123974]		growth	30-45 °C
[Ref.: #123974]	no	growth	10 °C
[Ref.: #123974]	no	growth	22 °C

[Ref.: #11444]	Temperature range	thermophilic
[Ref.: #34458]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #123974]	Temperature range	psychrophilic

Information on physiology and metabolism Physiology and metabolism

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #123974]	hippurate ChEBI	-	hydrolysis
[Ref.: #123974]	nitrate ChEBI	-	reduction
[Ref.: #123974]	nitrite ChEBI	-	reduction

	Metabolite production	Metabolite	Production
[Ref.: #123974]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #123974]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #123974]	catalase	-	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #123974]	gamma-glutamyltransferase	-	2.3.2.2
[Ref.: #123974]	gelatinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #123974]	oxidase	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #123974]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #123974]	7774	-	-	+	+	-	+	-	-	-	-	-	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #11444]	Sample type/isolated from	adult female toad, Xenopus laevis
[Ref.: #11444]	Host species	Xenopus laevis

[Ref.: #67770]	Sample type/isolated from	Adult female toad, Xenopus laevis
[Ref.: #67770]	Host species	Xenopus laevis

[Ref.: #123974]	Sample type/isolated from	Adult female toad, Xenopus larvis
* marker position based on {}

Isolation sources categories

#Host

#Amphibia

What are isolation sources categories?

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Global distribution of 16S sequence X52929 (>99% sequence identity) for Mycobacterium xenopi subclade from Microbeatlas

Aquatic Samples	566
Soil Samples	795
Animal Samples	4741
Plant Samples	274
Total Samples	6376

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #11444]	Pathogenicity (human)	yes
[Ref.: #11444]	Pathogenicity (animal)	yes
[Ref.: #11444]	Biosafety level	2	Risk group (German classification) According to TRBA 466
[Ref.: #123974]	Biosafety level	2	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Mycobacterium xenopi strain ATCC19250 16S ribosomal RNA (rrs) gene, partial sequence	AF059844	179	ENA	1789 tax ID	*
[Ref.: #20218]	Mycobacterium xenopi strain ATCC 19250 16S-23S ribosomal RNA intergenic spacer, partial sequence	HQ293150	132	ENA	1789 tax ID	*
[Ref.: #20218]	Mycobacterium xenopi strain ATCC 19250 16S ribosomal RNA gene, partial sequence	JQ348120	216	ENA	1789 tax ID	*
[Ref.: #20218]	Mycobacterium xenopi 16S ribosomal RNA and 23S ribosomal RNA gene fragments	L15624	397	ENA	1789 tax ID	*
[Ref.: #20218]	M.xenopi 16S ribosomal RNA gene	M59272	151	ENA	1789 tax ID	*
[Ref.: #20218]	M.xenopi 16S ribosomal rRNA	M61664	1376	ENA	1789 tax ID	*
[Ref.: #20218]	Mycobacterium xenopi 16S rRNA gene	X52929	1474	ENA	1789 tax ID	*
[Ref.: #20218]	Mycobacterium xenopi partial 16S rRNA	X53895	1225	ENA	1789 tax ID	*
[Ref.: #20218]	Mycobacterium xenopi strain CIP 104035 16S ribosomal RNA gene, partial sequence	AF547982	560	ENA	1789 tax ID	*
[Ref.: #20218]	Mycobacterium xenopi 16S rRNA gene	AJ536033	1480	ENA	1789 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Mycobacterium xenopi DSM 43995	GCA_002102015	contig	GenBank	1789 tax ID
[Ref.: #67770]	Mycobacterium xenopi NCTC10042	GCA_900453395	contig	GenBank	1789 tax ID
[Ref.: #66792]	Mycobacterium xenopi strain DSM 43995	1789.6	wgs	PATRIC	1789 tax ID	*
[Ref.: #66792]	Mycobacterium xenopi strain JCM 15661T	1789.10	complete	PATRIC	1789 tax ID	*
[Ref.: #66792]	Mycobacterium xenopi strain NCTC10042	1789.9	wgs	PATRIC	1789 tax ID	*
[Ref.: #66792]	Mycobacterium xenopi NCTC 10042	2811995252	draft	JGI IMG/M	1789 tax ID	*

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GC-content

65.9 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Mycobacterium xenopi strain JCM 15661T PATRIC: 1789.10
[Ref.: #69480]	motile	no	95.375	no
[Ref.: #69480]	gram-positive	yes	85.296	no
[Ref.: #69480]	anaerobic	no	98.384	no
[Ref.: #69480]	aerobic	yes	86.931	no
[Ref.: #69480]	halophile	no	92.24	no
[Ref.: #69480]	spore-forming	no	85.801	no
[Ref.: #69480]	thermophile	no	92.236	no
[Ref.: #69480]	glucose-util	yes	69.025	no
[Ref.: #69480]	flagellated	no	99.039	no
[Ref.: #69480]	glucose-ferment	no	93.121	no

Availability in culture collections External links

[Ref.: #11444]

Culture collection no.

DSM 43995, ATCC 19250, NCTC 10042, TMC 1482, JCM 15661, CCUG 28011, CCUG 31306, CIP 104035, CNCTC 7303

[Ref.: #77769]

SI-ID 44545

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Complete Genome Sequence of Mycobacterium xenopi JCM15661(T), Obtained Using Nanopore and Illumina Sequencing Technologies.	Yoshida M, Fukano H, Asakura T, Hisatsune J, Hoshino Y	Microbiol Resour Announc	10.1128/MRA.01583-19	2020	*
Pathogenicity	Time-kill kinetics of slowly growing mycobacteria common in pulmonary disease.	Ferro BE, van Ingen J, Wattenberg M, van Soolingen D, Mouton JW	J Antimicrob Chemother	10.1093/jac/dkv180	2015	*
Genetics	Novel mass spectrometry-based tool for genotypic identification of mycobacteria.	Lefmann M, Honisch C, Bocker S, Storm N, von Wintzingerode F, Schlotelburg C, Moter A, van den Boom D, Gobel UB	J Clin Microbiol	10.1128/JCM.42.1.339-346.2004	2004	*
Genetics	Structure of a novel glycopeptidolipid antigen containing a O-methylated serine isolated from Mycobacterium xenopi. Complete 1H-NMR and 13C-NMR assignment.	Riviere M, Auge S, Vercauteren J, Wisingerova E, Puzo G	Eur J Biochem	10.1111/j.1432-1033.1993.tb17935.x	1993	*

References

#11444

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 43995

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#34458 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#77769

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID44545.1 )

#123974 Collection of Institut Pasteur ; Curators of the CIP; CIP 104035
* These data were automatically processed and therefore are not curated

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Mycobacterium xenopi strain JCM 15661T

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