Name: Halomonas venusta DSM 4743
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 6019

Type strain:

Species: Halomonas venusta

Culture col. no.: DSM 4743, ATCC 27125, CCUG 16063, LMG 3445, CIP 74.07 103201, IAM 12553, JCM 20634, CIP 103201, CIP 74.07, IAM 12554, NBRC 102221, NCIMB 1979

Strain history: CIP <- 1988, NCIB <- 1974, ATCC <- P. Baumann, Hawaii Univ., USA: strain 86, Alcaligenes venustus

NCBI tax ID(s): 44935 (species)

SI-ID 92227

LMG 3445, ATCC 27125, DSM 4743, NCMB 1979, CCUG 16063, CIP 103201, NCIMB 1979, IAM12554, CIP 74.07, NBRC 102221, JCM 20634, CGMCC 1.2315

Other strains from Halomonas venusta

H. venusta HG 1, DSM 7049
H. venusta CIP 74.7
H. venusta CCUG 16067, ATCC 35138, JCM 21025, ...
H. venusta CCUG 16068
H. venusta CCUG 16069
H. venusta CCUG 16070
H. venusta CCUG 16071, ATCC 35139, JCM 21026, ...
H. venusta CCUG 16072
H. venusta CCUG 16073
H. venusta CCUG 16074
H. venusta JCM 21024, ATCC 35137, CCUG 16064, ...

Section

Halomonas venusta DSM 4743 is a mesophilic, Gram-negative, motile bacterium that was isolated from seawater.

Gram-negative
motile
rod-shaped
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Oceanospirillales*
	Family	*Halomonadaceae*
	Genus	*Halomonas*
	Species	**Halomonas venusta**
	Full Scientific Name (LPSN)	Halomonas venusta (Baumann et al. 1972) Dobson and Franzmann 1996

	Synonym	"Vreelandella* venusta"*
	Synonym	Alcaligenes venustus
	Synonym	Deleya venusta

Information on morphological and physiological properties Morphology

[Ref.: #123815]	Gram stain	negative

[Ref.: #123815]	Cell shape	rod-shaped

[Ref.: #123815]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #1749]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #1749]

Culture medium growth

[Ref.: #1749]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1749]

Culture medium composition

expand / minimize

[Ref.: #1749]

Culture medium

MARINE AGAR (DSMZ Medium 123)

[Ref.: #1749]

Culture medium growth

[Ref.: #1749]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1749]

Culture medium composition

expand / minimize

[Ref.: #36494]

Culture medium

Marine agar (MA)

[Ref.: #36494]

Culture medium growth

[Ref.: #36494]

Culture medium composition

expand / minimize

[Ref.: #123815]

Culture medium

CIP Medium 13

[Ref.: #123815]

Culture medium growth

[Ref.: #123815]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #1749]		growth	26 °C
[Ref.: #36494]		growth	25 °C
[Ref.: #46428]		growth	26-30 °C
[Ref.: #67770]		growth	25 °C
[Ref.: #123815]		growth	5-41 °C
[Ref.: #123815]	no	growth	45 °C

[Ref.: #1749]	Temperature range	mesophilic
[Ref.: #36494]	Temperature range	mesophilic
[Ref.: #46428]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #123815]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #123815]		NaCl		growth	0-10	%

[Ref.: #67770]

Observation

quinones: Q-9

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #123815]	citrate ChEBI	+	carbon source
[Ref.: #123815]	esculin ChEBI	-	hydrolysis
[Ref.: #123815]	hippurate ChEBI	-	hydrolysis
[Ref.: #123815]	malonate ChEBI	-	assimilation
[Ref.: #123815]	nitrate ChEBI	+	reduction
[Ref.: #123815]	nitrate ChEBI	-	respiration
[Ref.: #123815]	nitrite ChEBI	-	reduction

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #123815]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	no	yes

	Metabolite production	Metabolite	Production
[Ref.: #123815]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #123815]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #123815]	amylase	-
[Ref.: #123815]	beta-galactosidase	-	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #123815]	caseinase	-	3.4.21.50
[Ref.: #123815]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #123815]	DNase	-
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #123815]	gamma-glutamyltransferase	+	2.3.2.2
[Ref.: #123815]	gelatinase	-
[Ref.: #123815]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #123815]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #123815]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #123815]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #123815]	oxidase	+
[Ref.: #123815]	phenylalanine ammonia-lyase	+	4.3.1.24
[Ref.: #123815]	protease	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #123815]	tryptophan deaminase	-
[Ref.: #123815]	tween esterase	-
[Ref.: #123815]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #123815]	355	not determinedn.d.	+	+	-	+	-	-	-	+	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	-	-	-	-	+	+	+	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	+	+	-	-	+	-	-	-	-	+	+	+	+	+	+	-	-	+	-	-	-	-	+	+	+	-	+	-	-	+	+	+	+	+	+	+	-	+	-	+	+	+	+	+	+	+	-	+	+	+

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #123815]	7424	-	+	+	+	-	+	+	-	-	-	+	+	-	-	-	+	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #1749]	Sample type/isolated from	seawater

[Ref.: #46428]	Sample type/isolated from	Seawater

[Ref.: #123815]	Sample type/isolated from	Environment, Seawater
[Ref.: #123815]	Geographic location (country and/or sea, region)	Hawaii
[Ref.: #123815]	Country	United States of America
[Ref.: #123815]	Country ISO 3 Code	USA
[Ref.: #123815]	Continent	North America
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence HQ727663 (>99% sequence identity) for Halomonas from Microbeatlas

Aquatic Samples	62
Soil Samples	3
Animal Samples	12
Plant Samples	1
Total Samples	78

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #1749]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #123815]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #1749]	Halomonas venusta partial 16S rRNA gene, strain DSM 4743	AJ306894	1530	ENA	44935 tax ID
[Ref.: #20218]	Halomonas venusta strain DSM4743 16S ribosomal RNA gene, partial sequence	HQ727663	1340	ENA	44935 tax ID	*
[Ref.: #20218]	Deleya venusta 16S ribosomal RNA (16S rRNA) gene	L42618	1479	ENA	44935 tax ID	*
[Ref.: #20218]	Halomonas venusta genes for 16S ribosomal RNA, internal transcribed spacer 1 and 23S ribosomal RNA, partial and complete sequence, clone: 924	AB367225	924	ENA	44935 tax ID	*
[Ref.: #20218]	Halomonas venusta genes for 16S ribosomal RNA, internal transcribed spacer 1 and 23S ribosomal RNA, partial and complete sequence, clone: 1302	AB367226	1302	ENA	44935 tax ID	*
[Ref.: #20218]	Halomonas venusta gene for 16S rRNA, partial sequence, strain: NBRC 102221	AB681735	1460	ENA	44935 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Halomonas venusta DSM 4743	GCA_016107635	contig	GenBank	44935 tax ID	*
[Ref.: #66792]	Halomonas venusta NBRC 102221	GCA_007989605	contig	GenBank	44935 tax ID	*
[Ref.: #66792]	Halomonas venusta strain DSM 4743	44935.14	wgs	PATRIC	44935 tax ID	*
[Ref.: #66792]	Halomonas venusta strain NBRC 102221	44935.11	wgs	PATRIC	44935 tax ID	*

[Ref.: #67770]	GC-content	54.1 mol%	Buoyant density centrifugation (BD)
[Ref.: #67770]	GC-content	52 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Halomonas venusta strain DSM 4743 PATRIC: 44935.14
[Ref.: #69480]	gram-positive	no	98.742	no
[Ref.: #69480]	anaerobic	no	98.208	no
[Ref.: #69480]	halophile	yes	91.836	no
[Ref.: #69480]	spore-forming	no	95.443	no
[Ref.: #69480]	glucose-util	yes	94.152	no
[Ref.: #69480]	aerobic	yes	92.538	no
[Ref.: #69480]	flagellated	yes	77.224	no
[Ref.: #69480]	thermophile	no	99.035	yes
[Ref.: #69480]	motile	yes	93.543	no
[Ref.: #69480]	glucose-ferment	no	71.003	no

Availability in culture collections External links

[Ref.: #1749]

Culture collection no.

DSM 4743, ATCC 27125, CCUG 16063, LMG 3445, CIP 74.07 103201, IAM 12553, JCM 20634, CIP 103201, CIP 74.07, IAM 12554, NBRC 102221, NCIMB 1979

[Ref.: #75505]

SI-ID 92227

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Genetics	Complete Genome Sequence of Halomonas venusta Type Strain DSM 4743, a Moderately Halophilic Marine Bacterium.	Martinez-Abarca F, Hernandez-Soto LM, Ramirez-Saad HC, Aguirre-Garrido JF	Microbiol Resour Announc	10.1128/MRA.00144-21	2021	*
Phylogeny	Halomonas humidisoli Sp. Nov., Isolated From Saline-Alkaline Soil.	Liu H, Tang L, Zhao J, Miao S, Gong Q, Ma L, Zhang G	Curr Microbiol	10.1007/s00284-020-02291-x	2021	*
Phylogeny	Halomonas lutescens sp. nov., a halophilic bacterium isolated from a lake sediment.	Wang T, Wei X, Xin Y, Zhuang J, Shan S, Zhang J	Int J Syst Evol Microbiol	10.1099/ijsem.0.001413	2016	*
Phylogeny	Halomonas zhaodongensis sp. nov., a slightly halophilic bacterium isolated from saline-alkaline soils in Zhaodong, China.	Jiang J, Pan Y, Meng L, Hu S, Zhang X, Hu B, Meng J, Li C, Huang H, Wang K, Su T	Antonie Van Leeuwenhoek	10.1007/s10482-013-9976-3	2013	*
Phylogeny	Halomonas andesensis sp. nov., a moderate halophile isolated from the saline lake Laguna Colorada in Bolivia.	Guzman D, Quillaguaman J, Munoz M, Hatti-Kaul R	Int J Syst Evol Microbiol	10.1099/ijs.0.014522-0	2009	*
Phylogeny	Halomonas alkaliphila sp. nov., a novel halotolerant alkaliphilic bacterium isolated from a salt pool in Campania (Italy).	Romano I, Lama L, Nicolaus B, Poli A, Gambacorta A, Giordano A	J Gen Appl Microbiol	10.2323/jgam.52.339	2006	*

References

#1749

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 4743

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#36494 ; Curators of the CIP;
#46428 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 16063

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#75505

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID92227.1 )

#123815 Collection of Institut Pasteur ; Curators of the CIP; CIP 103201
* These data were automatically processed and therefore are not curated

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Halomonas venusta strain DSM 4743

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