Name: Chryseobacterium defluvii B2
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 5668

Type strain:

Species: Chryseobacterium defluvii

Strain Designation: B2, B2T

Culture col. no.: DSM 14219, CIP 107207, CCUG 47675, KCTC 12434

Strain history: CIP <- 2001, P. Kämpfer, Giessen Univ., Giessen, Germany: strain B2T <- U. Dreyer

NCBI tax ID(s): 160396 (species)

SI-ID 20512

DSM 14219, CIP 107207, CCUG 47675, LMG 22469, BCRC 17335, CCRC 17335, KCTC 12434, KACC 11392

Section

Chryseobacterium defluvii B2 is an aerobe, mesophilic, rod-shaped bacterium that was isolated from wastewater.

rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Weeksellaceae*
	Genus	*Chryseobacterium*
	Species	**Chryseobacterium defluvii**
	Full Scientific Name (LPSN)	Chryseobacterium defluvii Kämpfer et al. 2003

Information on morphological and physiological properties Morphology

[Ref.: #67771]	Gram stain	negative
[Ref.: #118866]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.983

[Ref.: #118866]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #118866]	Motility	no
[Ref.: #67771]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %93.924

[Ref.: #118866]

Hemolysis ability

[Ref.: #118866]	Pigment production	yes
[Ref.: #118866]	Pigment name	Flexirubin

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5257]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #5257]

Culture medium growth

[Ref.: #5257]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5257]

Culture medium composition

expand / minimize

[Ref.: #40560]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #40560]

Culture medium growth

[Ref.: #40560]

Culture medium composition

expand / minimize

[Ref.: #118866]

Culture medium

CIP Medium 72

[Ref.: #118866]

Culture medium growth

[Ref.: #118866]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #5257]		growth	28 °C
[Ref.: #40560]		growth	30 °C
[Ref.: #57814]		growth	30-42 °C
[Ref.: #67771]		growth	28 °C
[Ref.: #118866]		growth	15-41 °C
[Ref.: #118866]	no	growth	5 °C
[Ref.: #118866]	no	growth	45 °C

[Ref.: #5257]	Temperature range	mesophilic
[Ref.: #40560]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic
[Ref.: #118866]	Temperature range	psychrophilic
[Ref.: #118866]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #57814]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe
[Ref.: #118866]	Oxygen tolerance	obligate aerobe

[Ref.: #67771]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.997

	Salt	Tested relation		Salt conc.
[Ref.: #118866]	NaCl		growth	0	%
[Ref.: #118866]	NaCl	no	growth	2	%
[Ref.: #118866]	NaCl	no	growth	4	%
[Ref.: #118866]	NaCl	no	growth	6	%
[Ref.: #118866]	NaCl	no	growth	8	%
[Ref.: #118866]	NaCl	no	growth	10	%

[Ref.: #67771]

Observation

quinones: MK-6

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #118866]	citrate ChEBI	-	carbon source
[Ref.: #118866]	esculin ChEBI	+	hydrolysis
[Ref.: #118866]	hippurate ChEBI	+	hydrolysis
[Ref.: #118866]	malonate ChEBI	-	assimilation
[Ref.: #118866]	nitrate ChEBI	-	builds gas from
[Ref.: #118866]	nitrate ChEBI	-	reduction
[Ref.: #118866]	nitrate ChEBI	-	respiration
[Ref.: #118866]	nitrite ChEBI	-	builds gas from
[Ref.: #118866]	nitrite ChEBI	-	reduction

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #118866]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	yes	no

	Metabolite production	Metabolite	Production
[Ref.: #118866]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #118866]		acetoin ChEBI	-
[Ref.: #118866]		glucose ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #118866]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #118866]	amylase	-
[Ref.: #118866]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #118866]	caseinase	+	3.4.21.50
[Ref.: #118866]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #118866]	DNase	-
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #118866]	gamma-glutamyltransferase	+	2.3.2.2
[Ref.: #118866]	gelatinase	+
[Ref.: #118866]	lecithinase	+
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #118866]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #118866]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #118866]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #118866]	oxidase	+
[Ref.: #118866]	phenylalanine ammonia-lyase	-	4.3.1.24
[Ref.: #118866]	protease	+
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #118866]	tryptophan deaminase	-
[Ref.: #118866]	tween esterase	+
[Ref.: #118866]	urease	+	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #118866]	2068	not determinedn.d.	+	-	-	+	+	-	-	-	-	+	+	-	-	-	-	-	+	-	+	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	+	+	-	-	-	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #118866]	10159	-	+	-	+	-	+	+	-	+	-	+	+	-	-	-	+	-	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5257]	Sample type/isolated from	wastewater
[Ref.: #5257]	Geographic location (country and/or sea, region)	Berlin
[Ref.: #5257]	Country	Germany
[Ref.: #5257]	Country ISO 3 Code	DEU
[Ref.: #5257]	Continent	Europe

[Ref.: #57814]	Sample type/isolated from	Wastewater
[Ref.: #57814]	Sampling date	1998
[Ref.: #57814]	Geographic location (country and/or sea, region)	Berlin
[Ref.: #57814]	Country	Germany
[Ref.: #57814]	Country ISO 3 Code	DEU
[Ref.: #57814]	Continent	Europe

[Ref.: #67771]	Sample type/isolated from	From Wastewater
[Ref.: #67771]	Geographic location (country and/or sea, region)	Berlin
[Ref.: #67771]	Country	Germany
[Ref.: #67771]	Country ISO 3 Code	DEU
[Ref.: #67771]	Continent	Europe

[Ref.: #118866]	Sample type/isolated from	Environment, Wastewater
[Ref.: #118866]	Geographic location (country and/or sea, region)	Berlin
[Ref.: #118866]	Country	Germany
[Ref.: #118866]	Country ISO 3 Code	DEU
[Ref.: #118866]	Continent	Europe
[Ref.: #118866]	Isolation date	1998
* marker position based on {}

Isolation sources categories

#Engineered

#Waste

#Wastewater

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ309324 (>99% sequence identity) for Chryseobacterium defluvii from Microbeatlas

Aquatic Samples	4
Soil Samples	8
Animal Samples	2
Plant Samples	5
Total Samples	19

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5257]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #118866]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #5257]	Chryseobacterium defluvium 16S rRNA gene, isolate B2	AJ309324	1415	ENA	160396 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Chryseobacterium defluvii DSM 14219	GCA_003634775	scaffold	GenBank	160396 tax ID	*
[Ref.: #66792]	Chryseobacterium defluvii strain DSM 14219	160396.5	wgs	PATRIC	160396 tax ID	*
[Ref.: #66792]	Chryseobacterium defluvii DSM 14219	2681812957	draft	JGI IMG/M	160396 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Chryseobacterium defluvii DSM 14219 NCBI: GCA_003634775.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Chryseobacterium defluvii DSM 14219 NCBI: GCA_003634775.1
[Ref.: #69480]	flagellated	no	96.258	yes
[Ref.: #69480]	gram-positive	no	98.261	yes
[Ref.: #69480]	anaerobic	no	99.608	no
[Ref.: #69480]	aerobic	yes	89.389	yes
[Ref.: #69480]	halophile	no	96.138	no
[Ref.: #69480]	spore-forming	no	94.881	yes
[Ref.: #69480]	glucose-util	yes	83.101	no
[Ref.: #69480]	thermophile	no	99.284	no
[Ref.: #69480]	motile	no	90.175	no
[Ref.: #69480]	glucose-ferment	no	93.714	no

Availability in culture collections External links

[Ref.: #5257]

Culture collection no.

DSM 14219, CIP 107207, CCUG 47675, KCTC 12434

[Ref.: #75150]

SI-ID 20512

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Chryseobacterium daecheongense sp. nov., isolated from freshwater lake sediment.	Kim KK, Bae HS, Schumann P, Lee ST	Int J Syst Evol Microbiol	10.1099/ijs.0.02931-0	2005	*
Phylogeny	Chryseobacterium defluvii sp. nov., isolated from wastewater.	Kampfer P, Dreyer U, Neef A, Dott W, Busse HJ	Int J Syst Evol Microbiol	10.1099/ijs.0.02073-0	2003	*

References

#5257

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14219

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#40560 ; Curators of the CIP;
#57814 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 47675

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#75150

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID20512.1 )

#118866 Collection of Institut Pasteur ; Curators of the CIP; CIP 107207
* These data were automatically processed and therefore are not curated

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Chryseobacterium defluvii DSM 14219

Chryseobacterium defluvii DSM 14219

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