Name: Hydrogenobacter thermophilus TK-6
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 512

Type strain:

Species: Hydrogenobacter thermophilus

Strain Designation: TK-6

Culture col. no.: DSM 6534, IAM 12695, JCM 7687, NBRC 102181

Strain history: T. Kodama TK-6.

NCBI tax ID(s): 608538 (strain), 940 (species)

SI-ID 323294

DSM 6534, IAM 12695, JCM 7687, NBRC 102181

Section

Hydrogenobacter thermophilus TK-6 is an aerobe, chemolithotroph, thermophilic bacterium that was isolated from hot springs.

Gram-negative
rod-shaped
aerobe
chemolithotroph
thermophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Aquificota*
	Class	*Aquificia*
	Order	*Aquificales*
	Family	*Aquificaceae*
	Genus	*Hydrogenobacter*
	Species	**Hydrogenobacter thermophilus**
	Full Scientific Name (LPSN)	Hydrogenobacter thermophilus Kawasumi et al. 1984

Information on morphological and physiological properties Morphology

[Ref.: #23128]	Gram stain	negative

[Ref.: #23128]	Cell length	2.0-3.0 µm

[Ref.: #23128]	Cell width	0.3-0.5 µm

[Ref.: #23128]	Cell shape	rod-shaped

[Ref.: #23128]	Motility	no

Multimedia content

[Ref.: #66793]

Caption:

electron microscopic image

[Ref.: #66793]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #2720]

Culture medium

THERMOPHILIC HYDROGEN BACTERIA MEDIUM (DSMZ Medium 533)

[Ref.: #2720]

Culture medium growth

[Ref.: #2720]

Culture medium link

Medium recipe at MediaDive

[Ref.: #2720]

Culture medium composition

expand / minimize

[Ref.: #2720]

Culture medium

MINERAL MEDIUM FOR CHEMOLITHOTROPHIC GROWTH (H-3) (DSMZ Medium 81)

[Ref.: #2720]

Culture medium growth

[Ref.: #2720]

Culture medium link

Medium recipe at MediaDive

[Ref.: #2720]

Culture medium composition

expand / minimize

	Kind of temperature		Temperature
[Ref.: #2720]		growth	70 °C
[Ref.: #23128]	no	growth	37 °C
[Ref.: #23128]	no	growth	80 °C
[Ref.: #23128]		optimum	70-75 °C
[Ref.: #67770]		growth	70 °C

[Ref.: #2720]	Temperature range	thermophilic
[Ref.: #23128]	Temperature range	mesophilic
[Ref.: #23128]	Temperature range	hyperthermophilic
[Ref.: #23128]	Temperature range	thermophilic
[Ref.: #67770]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #23128]

Oxygen tolerance

aerobe

[Ref.: #23128]

Nutrition type

chemolithotroph

[Ref.: #23128]

Ability of spore formation

[Ref.: #67770]

Observation

quinones: Methionaquinone (MTK)-7(VI,VII-H₄)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #23128]	2-oxoglutarate ChEBI	-	carbon source
[Ref.: #23128]	2-oxoglutarate ChEBI	-	energy source
[Ref.: #23128]	3-hydroxybutyrate ChEBI	-	carbon source
[Ref.: #23128]	3-hydroxybutyrate ChEBI	-	energy source
[Ref.: #23128]	4-hydroxybenzoate ChEBI	-	carbon source
[Ref.: #23128]	4-hydroxybenzoate ChEBI	-	energy source
[Ref.: #23128]	acetate ChEBI	-	carbon source
[Ref.: #23128]	acetate ChEBI	-	energy source
[Ref.: #23128]	betaine ChEBI	-	carbon source
[Ref.: #23128]	betaine ChEBI	-	energy source
[Ref.: #23128]	citrate ChEBI	-	carbon source
[Ref.: #23128]	citrate ChEBI	-	energy source
[Ref.: #23128]	D-mannose ChEBI	-	carbon source
[Ref.: #23128]	D-mannose ChEBI	-	energy source
[Ref.: #23128]	D-trehalose ChEBI	-	carbon source
[Ref.: #23128]	D-trehalose ChEBI	-	energy source
[Ref.: #23128]	dimethylamine ChEBI	-	carbon source
[Ref.: #23128]	dimethylamine ChEBI	-	energy source
[Ref.: #23128]	ethanol ChEBI	-	carbon source
[Ref.: #23128]	ethanol ChEBI	-	energy source
[Ref.: #23128]	formate ChEBI	-	carbon source
[Ref.: #23128]	formate ChEBI	-	energy source
[Ref.: #23128]	fructose ChEBI	-	carbon source
[Ref.: #23128]	fructose ChEBI	-	energy source
[Ref.: #23128]	fumarate ChEBI	-	carbon source
[Ref.: #23128]	fumarate ChEBI	-	energy source
[Ref.: #23128]	galactose ChEBI	-	carbon source
[Ref.: #23128]	galactose ChEBI	-	energy source
[Ref.: #23128]	gluconate ChEBI	-	carbon source
[Ref.: #23128]	gluconate ChEBI	-	energy source
[Ref.: #23128]	glucose ChEBI	-	carbon source
[Ref.: #23128]	glucose ChEBI	-	energy source
[Ref.: #23128]	glycine ChEBI	-	carbon source
[Ref.: #23128]	glycine ChEBI	-	energy source
[Ref.: #23128]	glycolate ChEBI	-	carbon source
[Ref.: #23128]	glycolate ChEBI	-	energy source
[Ref.: #23128]	L-alanine ChEBI	-	carbon source
[Ref.: #23128]	L-alanine ChEBI	-	energy source
[Ref.: #23128]	L-arginine ChEBI	-	carbon source
[Ref.: #23128]	L-arginine ChEBI	-	energy source
[Ref.: #23128]	L-aspartate ChEBI	-	carbon source
[Ref.: #23128]	L-aspartate ChEBI	-	energy source
[Ref.: #23128]	L-glutamate ChEBI	-	carbon source
[Ref.: #23128]	L-glutamate ChEBI	-	energy source
[Ref.: #23128]	L-histidine ChEBI	-	carbon source
[Ref.: #23128]	L-histidine ChEBI	-	energy source
[Ref.: #23128]	L-leucine ChEBI	-	carbon source
[Ref.: #23128]	L-leucine ChEBI	-	energy source
[Ref.: #23128]	L-lysine ChEBI	-	carbon source
[Ref.: #23128]	L-lysine ChEBI	-	energy source
[Ref.: #23128]	L-proline ChEBI	-	carbon source
[Ref.: #23128]	L-proline ChEBI	-	energy source
[Ref.: #23128]	L-rhamnose ChEBI	-	carbon source
[Ref.: #23128]	L-rhamnose ChEBI	-	energy source
[Ref.: #23128]	L-serine ChEBI	-	carbon source
[Ref.: #23128]	L-serine ChEBI	-	energy source
[Ref.: #23128]	L-tryptophan ChEBI	-	carbon source
[Ref.: #23128]	L-tryptophan ChEBI	-	energy source
[Ref.: #23128]	L-valine ChEBI	-	carbon source
[Ref.: #23128]	L-valine ChEBI	-	energy source
[Ref.: #23128]	lactate ChEBI	-	carbon source
[Ref.: #23128]	lactate ChEBI	-	energy source
[Ref.: #23128]	malate ChEBI	-	carbon source
[Ref.: #23128]	malate ChEBI	-	energy source
[Ref.: #23128]	maleic acid ChEBI	-	carbon source
[Ref.: #23128]	maleic acid ChEBI	-	energy source
[Ref.: #23128]	maltose ChEBI	-	carbon source
[Ref.: #23128]	maltose ChEBI	-	energy source
[Ref.: #23128]	mannitol ChEBI	-	carbon source
[Ref.: #23128]	mannitol ChEBI	-	energy source
[Ref.: #23128]	methanol ChEBI	-	carbon source
[Ref.: #23128]	methanol ChEBI	-	energy source
[Ref.: #23128]	methylamine ChEBI	-	carbon source
[Ref.: #23128]	methylamine ChEBI	-	energy source
[Ref.: #23128]	propionate ChEBI	-	carbon source
[Ref.: #23128]	propionate ChEBI	-	energy source
[Ref.: #23128]	pyruvate ChEBI	-	carbon source
[Ref.: #23128]	pyruvate ChEBI	-	energy source
[Ref.: #23128]	raffinose ChEBI	-	carbon source
[Ref.: #23128]	raffinose ChEBI	-	energy source
[Ref.: #23128]	starch ChEBI	-	carbon source
[Ref.: #23128]	starch ChEBI	-	energy source
[Ref.: #23128]	succinate ChEBI	-	carbon source
[Ref.: #23128]	succinate ChEBI	-	energy source
[Ref.: #23128]	sucrose ChEBI	-	carbon source
[Ref.: #23128]	sucrose ChEBI	-	energy source
[Ref.: #23128]	trimethylamine ChEBI	-	carbon source
[Ref.: #23128]	trimethylamine ChEBI	-	energy source
[Ref.: #23128]	xylose ChEBI	-	carbon source
[Ref.: #23128]	xylose ChEBI	-	energy source
[Ref.: #23128]	yeast extract	-	carbon source
[Ref.: #23128]	yeast extract	-	energy source
	Only first 10 entries are displayed. Click here to see all.

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	cardiolipin biosynthesis	100	7 of 7
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	sulfopterin metabolism	100	4 of 4
[Ref.: #66794]	denitrification	100	2 of 2
[Ref.: #66794]	hydrogen production	100	5 of 5
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	biotin biosynthesis	100	4 of 4
[Ref.: #66794]	reductive acetyl coenzyme A pathway	100	7 of 7
[Ref.: #66794]	palmitate biosynthesis	95.45	21 of 22
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	valine metabolism	88.89	8 of 9
[Ref.: #66794]	pentose phosphate pathway	81.82	9 of 11
[Ref.: #66794]	peptidoglycan biosynthesis	80	12 of 15
[Ref.: #66794]	threonine metabolism	80	8 of 10
[Ref.: #66794]	flavin biosynthesis	80	12 of 15
[Ref.: #66794]	lipoate biosynthesis	80	4 of 5
[Ref.: #66794]	photosynthesis	78.57	11 of 14
[Ref.: #66794]	tetrahydrofolate metabolism	78.57	11 of 14
[Ref.: #66794]	molybdenum cofactor biosynthesis	77.78	7 of 9
[Ref.: #66794]	nitrate assimilation	77.78	7 of 9
[Ref.: #66794]	lipid A biosynthesis	77.78	7 of 9
[Ref.: #66794]	phenylalanine metabolism	76.92	10 of 13
[Ref.: #66794]	isoleucine metabolism	75	6 of 8
[Ref.: #66794]	acetate fermentation	75	3 of 4
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	CMP-KDO biosynthesis	75	3 of 4
[Ref.: #66794]	ubiquinone biosynthesis	71.43	5 of 7
[Ref.: #66794]	heme metabolism	71.43	10 of 14
[Ref.: #66794]	vitamin B1 metabolism	69.23	9 of 13
[Ref.: #66794]	purine metabolism	68.09	64 of 94
[Ref.: #66794]	serine metabolism	66.67	6 of 9
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	selenocysteine biosynthesis	66.67	4 of 6
[Ref.: #66794]	L-lactaldehyde degradation	66.67	2 of 3
[Ref.: #66794]	formaldehyde oxidation	66.67	2 of 3
[Ref.: #66794]	cyanate degradation	66.67	2 of 3
[Ref.: #66794]	NAD metabolism	66.67	12 of 18
[Ref.: #66794]	octane oxidation	66.67	2 of 3
[Ref.: #66794]	aspartate and asparagine metabolism	66.67	6 of 9
[Ref.: #66794]	citric acid cycle	64.29	9 of 14
[Ref.: #66794]	glutamate and glutamine metabolism	64.29	18 of 28
[Ref.: #66794]	vitamin B6 metabolism	63.64	7 of 11
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
[Ref.: #66794]	pyrimidine metabolism	62.22	28 of 45
[Ref.: #66794]	starch degradation	60	6 of 10
[Ref.: #66794]	glycogen metabolism	60	3 of 5
[Ref.: #66794]	d-mannose degradation	55.56	5 of 9
[Ref.: #66794]	proline metabolism	54.55	6 of 11
[Ref.: #66794]	sulfate reduction	53.85	7 of 13
[Ref.: #66794]	glycolysis	52.94	9 of 17
[Ref.: #66794]	alanine metabolism	51.72	15 of 29
[Ref.: #66794]	ethanol fermentation	50	1 of 2
[Ref.: #66794]	adipate degradation	50	1 of 2
[Ref.: #66794]	gluconeogenesis	50	4 of 8
[Ref.: #66794]	1,4-dihydroxy-6-naphthoate biosynthesis	50	3 of 6
[Ref.: #66794]	non-pathway related	50	19 of 38
[Ref.: #66794]	pantothenate biosynthesis	50	3 of 6
[Ref.: #66794]	glycolate and glyoxylate degradation	50	3 of 6
[Ref.: #66794]	C4 and CAM-carbon fixation	50	4 of 8
[Ref.: #66794]	cis-vaccenate biosynthesis	50	1 of 2
[Ref.: #66794]	glycine metabolism	50	5 of 10
[Ref.: #66794]	phenylmercury acetate degradation	50	1 of 2
[Ref.: #66794]	ketogluconate metabolism	50	4 of 8
[Ref.: #66794]	dolichol and dolichyl phosphate biosynthesis	50	1 of 2
[Ref.: #66794]	methionine metabolism	50	13 of 26
[Ref.: #66794]	histidine metabolism	48.28	14 of 29
[Ref.: #66794]	urea cycle	46.15	6 of 13
[Ref.: #66794]	oxidative phosphorylation	46.15	42 of 91
[Ref.: #66794]	leucine metabolism	46.15	6 of 13
[Ref.: #66794]	isoprenoid biosynthesis	46.15	12 of 26
[Ref.: #66794]	arginine metabolism	45.83	11 of 24
[Ref.: #66794]	metabolism of disaccharids	45.45	5 of 11
[Ref.: #66794]	propanol degradation	42.86	3 of 7
[Ref.: #66794]	tryptophan metabolism	42.11	16 of 38
[Ref.: #66794]	lysine metabolism	40.48	17 of 42
[Ref.: #66794]	glycine betaine biosynthesis	40	2 of 5
[Ref.: #66794]	coenzyme M biosynthesis	40	4 of 10
[Ref.: #66794]	propionate fermentation	40	4 of 10
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	33.33	4 of 12
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	CO2 fixation in Crenarchaeota	33.33	3 of 9
[Ref.: #66794]	acetyl CoA biosynthesis	33.33	1 of 3
[Ref.: #66794]	degradation of hexoses	33.33	6 of 18
[Ref.: #66794]	cysteine metabolism	33.33	6 of 18
[Ref.: #66794]	degradation of pentoses	32.14	9 of 28
[Ref.: #66794]	myo-inositol biosynthesis	30	3 of 10
[Ref.: #66794]	tyrosine metabolism	28.57	4 of 14
[Ref.: #66794]	glutathione metabolism	28.57	4 of 14
[Ref.: #66794]	methanogenesis from CO2	25	3 of 12
[Ref.: #66794]	carnitine metabolism	25	2 of 8
[Ref.: #66794]	lactate fermentation	25	1 of 4
[Ref.: #66794]	cyclohexanol degradation	25	1 of 4
[Ref.: #66794]	toluene degradation	25	1 of 4
[Ref.: #66794]	butanoate fermentation	25	1 of 4
[Ref.: #66794]	dTDPLrhamnose biosynthesis	25	2 of 8
[Ref.: #66794]	ascorbate metabolism	22.73	5 of 22
[Ref.: #66794]	lipid metabolism	22.58	7 of 31
[Ref.: #66794]	chlorophyll metabolism	22.22	4 of 18
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #2720]	Sample type/isolated from	hot springs
[Ref.: #2720]	Geographic location (country and/or sea, region)	Izu, Kyushu
[Ref.: #2720]	Country	Japan
[Ref.: #2720]	Country ISO 3 Code	JPN
[Ref.: #2720]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil near hot-spring in Izu Peninsula
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Thermal spring
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #2720]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #2720]	H.thermophilus TK-6 (IAM-12695) 16S ribosomal RNA	Z30214	1513	ENA	608538 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Hydrogenobacter thermophilus TK-6	GCA_000164905	complete	GenBank	608538 tax ID	*
[Ref.: #66792]	Hydrogenobacter thermophilus TK-6	GCA_000010785	complete	GenBank	608538 tax ID	*
[Ref.: #66792]	Hydrogenobacter thermophilus TK-6	608538.3	complete	PATRIC	608538 tax ID	*
[Ref.: #66792]	Hydrogenobacter thermophilus TK-6, DSM 6534	650377953	complete	JGI IMG/M	608538 tax ID	*
[Ref.: #66792]	Hydrogenobacter thermophilus TK-6, DSM 6534	646311936	complete	JGI IMG/M	608538 tax ID	*

[Ref.: #67770]

GC-content

43.7 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Hydrogenobacter thermophilus TK-6 TK-6 NCBI: GCA_000164905.1
[Ref.: #69480]	motile	no	71.208	no
[Ref.: #69480]	flagellated	no	98.142	no
[Ref.: #69480]	gram-positive	no	99.121	yes
[Ref.: #69480]	anaerobic	no	51.228	yes
[Ref.: #69480]	aerobic	no	95.579	no
[Ref.: #69480]	halophile	no	93.663	no
[Ref.: #69480]	spore-forming	no	95.212	yes
[Ref.: #69480]	thermophile	yes	99.999	no
[Ref.: #69480]	glucose-util	no	53.311	yes
[Ref.: #69480]	glucose-ferment	no	88.043	no

Availability in culture collections External links

[Ref.: #2720]

Culture collection no.

DSM 6534, IAM 12695, JCM 7687, NBRC 102181

[Ref.: #70191]

SI-ID 323294

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Nitrogenase Activity in Thermophilic Chemolithoautotrophic Bacteria in the Phylum Aquificae Isolated under Nitrogen-Fixing Conditions from Nakabusa Hot Springs.	Nishihara A, Matsuura K, Tank M, McGlynn SE, Thiel V, Haruta S	Microbes Environ	10.1264/jsme2.ME18041	2018	*
Metabolism	Structural units important for activity of a novel-type phosphoserine phosphatase from Hydrogenobacter thermophilus TK-6 revealed by crystal structure analysis.	Chiba Y, Horita S, Ohtsuka J, Arai H, Nagata K, Igarashi Y, Tanokura M, Ishii M	J Biol Chem	10.1074/jbc.M112.449561	2013	*
Enzymology	Crystallization and preliminary X-ray diffraction analysis of a novel type of phosphoserine phosphatase from Hydrogenobacter thermophilus TK-6.	Chiba Y, Horita S, Ohtsuka J, Arai H, Nagata K, Igarashi Y, Tanokura M, Ishii M	Acta Crystallogr Sect F Struct Biol Cryst Commun	10.1107/S1744309112025213	2012	*
Genetics	Complete genome sequence of Hydrogenobacter thermophilus type strain (TK-6).	Zeytun A, Sikorski J, Nolan M, Lapidus A, Lucas S, Han J, Tice H, Cheng JF, Tapia R, Goodwin L, Pitluck S, Liolios K, Ivanova N, Mavromatis K, Mikhailova N, Ovchinnikova G, Pati A, Chen A, Palaniappan K, Ngatchou-Djao OD, Land M, Hauser L, Jeffries CD, Han C, Detter JC, Ubler S, Rohde M, Tindall BJ, Goker M, Wirth R, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Klenk HP, Kyrpides NC	Stand Genomic Sci	10.4056/sigs.1463589	2011	*
Genetics	Complete genome sequence of the thermophilic, obligately chemolithoautotrophic hydrogen-oxidizing bacterium Hydrogenobacter thermophilus TK-6.	Arai H, Kanbe H, Ishii M, Igarashi Y	J Bacteriol	10.1128/JB.00158-10	2010	*
Enzymology	Purification of three aminotransferases from Hydrogenobacter thermophilus TK-6--novel types of alanine or glycine aminotransferase: enzymes and catalysis.	Kameya M, Arai H, Ishii M, Igarashi Y	FEBS J	10.1111/j.1742-4658.2010.07604.x	2010	*
Metabolism	Enzymatic and electron paramagnetic resonance studies of anabolic pyruvate synthesis by pyruvate: ferredoxin oxidoreductase from Hydrogenobacter thermophilus.	Ikeda T, Yamamoto M, Arai H, Ohmori D, Ishii M, Igarashi Y	FEBS J	10.1111/j.1742-4658.2009.07506.x	2009	*
Enzymology	Carboxylation reaction catalyzed by 2-oxoglutarate:ferredoxin oxidoreductases from Hydrogenobacter thermophilus.	Yamamoto M, Ikeda T, Arai H, Ishii M, Igarashi Y	Extremophiles	10.1007/s00792-009-0289-4	2009	*
Enzymology	Ferredoxin-NADP reductase from the thermophilic hydrogen-oxidizing bacterium, Hydrogenobacter thermophilus TK-6.	Ikeda T, Nakamura M, Arai H, Ishii M, Igarashi Y	FEMS Microbiol Lett	10.1111/j.1574-6968.2009.01667.x	2009	*
Genetics	A soluble NADH-dependent fumarate reductase in the reductive tricarboxylic acid cycle of Hydrogenobacter thermophilus TK-6.	Miura A, Kameya M, Arai H, Ishii M, Igarashi Y	J Bacteriol	10.1128/JB.00747-08	2008	*
Enzymology	Sequencing and reverse transcription-polymerase chain reaction (RT-PCR) analysis of four hydrogenase gene clusters from an obligately autotrophic hydrogen-oxidizing bacterium, Hydrogenobacter thermophilus TK-6.	Ueda Y, Yamamoto M, Urasaki T, Arai H, Ishii M, Igarashi Y	J Biosci Bioeng	10.1263/jbb.104.470	2007	*
Enzymology	A novel ferredoxin-dependent glutamate synthase from the hydrogen-oxidizing chemoautotrophic bacterium Hydrogenobacter thermophilus TK-6.	Kameya M, Ikeda T, Nakamura M, Arai H, Ishii M, Igarashi Y	J Bacteriol	10.1128/JB.01360-06	2007	*
Enzymology	Purification and properties of glutamine synthetase from Hydrogenobacter thermophilus TK-6.	Kameya M, Arai H, Ishii M, Igarashi Y	J Biosci Bioeng	10.1263/jbb.102.311	2006	*
Metabolism	A novel oxalosuccinate-forming enzyme involved in the reductive carboxylation of 2-oxoglutarate in Hydrogenobacter thermophilus TK-6.	Aoshima M, Igarashi Y	Mol Microbiol	10.1111/j.1365-2958.2006.05399.x	2006	*
Metabolism	Role of two 2-oxoglutarate:ferredoxin oxidoreductases in Hydrogenobacter thermophilus under aerobic and anaerobic conditions.	Yamamoto M, Arai H, Ishii M, Igarashi Y	FEMS Microbiol Lett	10.1111/j.1574-6968.2006.00415.x	2006	*
Metabolism	Gene structure and expression profile of cytochrome bc nitric oxide reductase from Hydrogenobacter thermophilus TK-6.	Suzuki M, Arai H, Ishii M, Igarashi Y	Biosci Biotechnol Biochem	10.1271/bbb.60018	2006	*
Enzymology	Purification, characterization, and gene cloning of thermophilic cytochrome cd1 nitrite reductase from Hydrogenobacter thermophilus TK-6.	Suzuki M, Hirai T, Arai H, Ishii M, Igarashi Y	J Biosci Bioeng	10.1263/jbb.101.391	2006	*
Genetics	Anabolic five subunit-type pyruvate:ferredoxin oxidoreductase from Hydrogenobacter thermophilus TK-6.	Ikeda T, Ochiai T, Morita S, Nishiyama A, Yamada E, Arai H, Ishii M, Igarashi Y	Biochem Biophys Res Commun	10.1016/j.bbrc.2005.11.155	2005	*
Genetics	Two tandemly arranged ferredoxin genes in the Hydrogenobacter thermophilus genome: comparative characterization of the recombinant [4Fe-4S] ferredoxins.	Ikeda T, Yamamoto M, Arai H, Ohmori D, Ishii M, Igarashi Y	Biosci Biotechnol Biochem	10.1271/bbb.69.1172	2005	*
Metabolism	A novel enzyme, citryl-CoA lyase, catalysing the second step of the citrate cleavage reaction in Hydrogenobacter thermophilus TK-6.	Aoshima M, Ishii M, Igarashi Y	Mol Microbiol	10.1111/j.1365-2958.2004.04010.x	2004	*
Metabolism	A novel enzyme, citryl-CoA synthetase, catalysing the first step of the citrate cleavage reaction in Hydrogenobacter thermophilus TK-6.	Aoshima M, Ishii M, Igarashi Y	Mol Microbiol	10.1111/j.1365-2958.2004.04009.x	2004	*
Enzymology	A novel biotin protein required for reductive carboxylation of 2-oxoglutarate by isocitrate dehydrogenase in Hydrogenobacter thermophilus TK-6.	Aoshima M, Ishii M, Igarashi Y	Mol Microbiol	10.1046/j.1365-2958.2003.03863.x	2004	*
Enzymology	Characterization of two different 2-oxoglutarate:ferredoxin oxidoreductases from Hydrogenobacter thermophilus TK-6.	Yamamoto M, Arai H, Ishii M, Igarashi Y	Biochem Biophys Res Commun	10.1016/j.bbrc.2003.11.078	2003	*
Enzymology	A novel five-subunit-type 2-oxoglutalate:ferredoxin oxidoreductases from Hydrogenobacter thermophilus TK-6.	Yun NR, Yamamoto M, Arai H, Ishii M, Igarashi Y	Biochem Biophys Res Commun	10.1006/bbrc.2002.6651	2002	*
Phylogeny	Signature lipids and stable carbon isotope analyses of Octopus Spring hyperthermophilic communities compared with those of Aquificales representatives.	Jahnke LL, Eder W, Huber R, Hope JM, Hinrichs KU, Hayes JM, Des Marais DJ, Cady SL, Summons RE	Appl Environ Microbiol	10.1128/AEM.67.11.5179-5189.2001	2001	*
Enzymology	Chemical structure of a novel aminophospholipid from Hydrogenobacter thermophilus strain TK-6.	Yoshino J, Sugiyama Y, Sakuda S, Kodama T, Nagasawa H, Ishii M, Igarashi Y	J Bacteriol	10.1128/JB.183.21.6302-6304.2001	2001	*
Enzymology	The genes for anabolic 2-oxoglutarate: ferredoxin oxidoreductase from Hydrogenobacter thermophilus TK-6.	Yun NR, Arai H, Ishii M, Igarashi Y	Biochem Biophys Res Commun	10.1006/bbrc.2001.4542	2001	*
Metabolism	Nitrate respiratory metabolism in an obligately autotrophic hydrogen-oxidizing bacterium, Hydrogenobacter thermophilus TK-6.	Suzuki M, Cui ZJ, Ishii M, Igarashi Y	Arch Microbiol	10.1007/s002030000230	2001	*
Enzymology	Purification and characterization of membrane-bound hydrogenase from Hydrogenobacter thermophilus strain TK-6, an obligately autotrophic, thermophilic, hydrogen-oxidizing bacterium.	Ishii M, Takishita S, Iwasaki T, Peerapornpisal Y, Yoshino J, Kodama T, Igarashi Y	Biosci Biotechnol Biochem	10.1271/bbb.64.492	2000	*
Enzymology	Purification and characterization of pyruvate:ferredoxin oxidoreductase from Hydrogenobacter thermophilus TK-6.	Yoon KS, Ishii M, Kodama T, Igarashi Y	Arch Microbiol	10.1007/s002030050443	1997	*
Enzymology	Purification and characterization of ferredoxin from Hydrogenobacter thermophilus strain TK-6.	Ishii M, Ueda Y, Yoon KS, Igarashi Y, Kodama T	Biosci Biotechnol Biochem	10.1271/bbb.60.1513	1996	*
Enzymology	Purification and characterization of 2-oxoglutarate:ferredoxin oxidoreductase from a thermophilic, obligately chemolithoautotrophic bacterium, Hydrogenobacter thermophilus TK-6.	Yoon KS, Ishii M, Igarashi Y, Kodama T	J Bacteriol	10.1128/jb.178.11.3365-3368.1996	1996	*
Phylogeny	Phylogenetic position of the genus Hydrogenobacter.	Pitulle C, Yang Y, Marchiani M, Moore ER, Siefert JL, Aragno M, Jurtshuk P Jr, Fox GE	Int J Syst Bacteriol	10.1099/00207713-44-4-620	1994	*
Enzymology	Purification and characterization of ATP:citrate lyase from Hydrogenobacter thermophilus TK-6.	Ishii M, Igarashi Y, Kodama T	J Bacteriol	10.1128/jb.171.4.1788-1792.1989	1989	*
Phylogeny	Amino acid sequence of cytochrome c-552 from a thermophilic hydrogen-oxidizing bacterium, Hydrogenobacter thermophilus.	Sanbongi Y, Ishii M, Igarashi Y, Kodama T	J Bacteriol	10.1128/jb.171.1.65-69.1989	1989	*
Enzymology	2-Methylthio-1,4-naphthoquinone, a unique sulfur-containing quinone from a thermophilic hydrogen-oxidizing bacterium, Hydrogenobacter thermophilus.	Ishii M, Kawasumi T, Igarashi Y, Kodama T, Minoda Y	J Bacteriol	10.1128/jb.169.6.2380-2384.1987	1987	*

References

#2720

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 6534

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#23128

Toshiyuki Kawasumi, Yasuo Igarashi, Tohru Kodama, Yasuji Minoda: Hydrogenobacter thermophilus gen. nov., sp. nov., an Extremely Thermophilic, Aerobic, Hydrogen-Oxidizing Bacterium. IJSEM 34: 5 - 10 1984 ( DOI 10.1099/00207713-34-1-5 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66793

Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#70191

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID323294.1 )

* These data were automatically processed and therefore are not curated

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