Name: Salmonella enterica LT2
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 5117

Type strain:

Species: Salmonella enterica

Strain Designation: LT2

Culture col. no.: DSM 17058, ATCC 43971, CIP 60.62, NCIMB 11450, NCTC 12416, CCUG 42060, JCM 32817, NBRC 13245

Strain history: CIP <- 1960, M. Demerec, Genetics Dept., Carnegie Inst., New-York, USA: strain LT2, Salmonella typhimurium

NCBI tax ID(s): 28901 (species)

SI-ID 46974

LMG 7233, ATCC 43971, NCIMB 11450, ATCC 700720, NCIB 11450, NCTC12416, IFO 13245, CECT 722, CCUG 42060, DSM 17058, NBRC 13245, KCTC 12456, CIP 60.62

Other strains from Salmonella enterica

Section

Salmonella enterica LT2 is an aerobe, mesophilic bacterium that was isolated from Unknown source.

aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Enterobacterales*
	Family	*Enterobacteriaceae*
	Genus	*Salmonella*
	Species	**Salmonella enterica**
	Full Scientific Name (LPSN)	Salmonella enterica (ex Kauffmann and Edwards 1952) Le Minor and Popoff 1987

	Synonym	"Bacillus* typhi"*
	Synonym	"Bacillus* typhimurium"*
	Synonym	"Bacillus* enteritidis"*
	Synonym	"Bacillus* choleraesuis"*
	Synonym	Salmonella typhi
	Synonym	Salmonella choleraesuis
	Synonym	Salmonella paratyphi
	Synonym	Salmonella typhimurium
	Synonym	Salmonella enteritidis

Information on morphological and physiological properties Morphology

[Ref.: #119044]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.993

[Ref.: #119044]	Cell shape	rod-shaped

[Ref.: #119044]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %95.083

[Ref.: #22945]	Cell length	2 µm

[Ref.: #22945]	Cell width	0.5-1.5 µm

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6727]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #6727]

Culture medium growth

[Ref.: #6727]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6727]

Culture medium composition

expand / minimize

[Ref.: #6727]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #6727]

Culture medium growth

[Ref.: #6727]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6727]

Culture medium composition

expand / minimize

[Ref.: #33584]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #33584]

Culture medium growth

[Ref.: #33584]

Culture medium composition

expand / minimize

[Ref.: #119044]

Culture medium

CIP Medium 72

[Ref.: #119044]

Culture medium growth

[Ref.: #119044]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #6727]		growth	37 °C
[Ref.: #33584]		growth	30 °C
[Ref.: #55324]		growth	30 °C
[Ref.: #67770]		growth	37 °C
[Ref.: #119044]		growth	30-41 °C
[Ref.: #119044]	no	growth	5 °C
[Ref.: #119044]	no	growth	10 °C

[Ref.: #6727]	Temperature range	mesophilic
[Ref.: #33584]	Temperature range	mesophilic
[Ref.: #55324]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #119044]	Temperature range	psychrophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #55324]	Oxygen tolerance	aerobe
[Ref.: #119044]	Oxygen tolerance	facultative anaerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.84

[Ref.: #22945]

Name of produced compound

Hydrogen sulfide

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #22945]	2-dehydro-D-gluconate ChEBI	-	growth
[Ref.: #22945]	2-oxoglutarate ChEBI	-	growth
[Ref.: #22945]	3-coumarate ChEBI	-	growth
[Ref.: #22945]	3-hydroxybutyrate ChEBI	-	growth
[Ref.: #22945]	3-O-methyl-D-glucose ChEBI	-	growth
[Ref.: #22945]	3-phenylpropionate ChEBI	-	growth
[Ref.: #22945]	5-aminovalerate ChEBI	-	growth
[Ref.: #68368]	amygdalin ChEBI	-	fermentation	* from API 20E
[Ref.: #22945]	arabinose ChEBI	+	builds acid from
[Ref.: #68368]	arginine ChEBI	+	hydrolysis	* from API 20E, API ID32E
[Ref.: #22945]	benzoate ChEBI	-	growth
[Ref.: #22945]	betaine ChEBI	-	growth
[Ref.: #22945]	cellobiose ChEBI	-	builds acid from
[Ref.: #22945]	cellobiose ChEBI	-	growth
[Ref.: #68374]	cellobiose ChEBI	-	builds acid from	* from API ID32E
[Ref.: #22945]	cis-aconitate ChEBI	+	growth
[Ref.: #22945]	citrate ChEBI	+	growth
[Ref.: #119044]	citrate ChEBI	+	carbon source
[Ref.: #68368]	citrate ChEBI	+	assimilation	* from API 20E
[Ref.: #22945]	D-alanine ChEBI	+	growth
[Ref.: #22945]	D-arabitol ChEBI	-	growth
[Ref.: #68374]	D-arabitol ChEBI	-	builds acid from	* from API ID32E
[Ref.: #22945]	D-fructose ChEBI	+	growth
[Ref.: #22945]	D-galactose ChEBI	+	growth
[Ref.: #22945]	D-galacturonic acid ChEBI	-	growth
[Ref.: #68374]	D-galacturonic acid ChEBI	-	builds acid from	* from API ID32E
[Ref.: #22945]	D-glucarate ChEBI	+	growth
[Ref.: #22945]	D-gluconate ChEBI	+	growth
[Ref.: #22945]	D-glucosamine ChEBI	+	growth
[Ref.: #22945]	D-glucose ChEBI	+	growth
[Ref.: #68374]	D-glucose ChEBI	+	builds acid from	* from API ID32E
[Ref.: #68368]	D-glucose ChEBI	+	fermentation	* from API 20E
[Ref.: #22945]	D-glucuronate ChEBI	+	growth
[Ref.: #22945]	D-lyxose ChEBI	-	growth
[Ref.: #22945]	D-mannitol ChEBI	+	growth
[Ref.: #68374]	D-mannitol ChEBI	+	builds acid from	* from API ID32E
[Ref.: #68368]	D-mannitol ChEBI	+	fermentation	* from API 20E
[Ref.: #22945]	D-mannose ChEBI	+	growth
[Ref.: #22945]	D-ribose ChEBI	+	growth
[Ref.: #22945]	D-sorbitol ChEBI	+	growth
[Ref.: #22945]	D-tagatose ChEBI	+	growth
[Ref.: #22945]	D-trehalose ChEBI	+	growth
[Ref.: #22945]	D-xylose ChEBI	+	growth
[Ref.: #22945]	decanoate ChEBI	-	growth
[Ref.: #22945]	erythritol ChEBI	-	growth
[Ref.: #22945]	esculin ChEBI	-	growth
[Ref.: #22945]	ethanolamine ChEBI	+	growth
[Ref.: #22945]	fumarate ChEBI	+	growth
[Ref.: #22945]	galactarate ChEBI	+	builds acid from
[Ref.: #22945]	galactarate ChEBI	+	growth
[Ref.: #22945]	galactitol ChEBI	+	builds acid from
[Ref.: #22945]	galactitol ChEBI	+	growth
[Ref.: #22945]	galacturonate ChEBI	-	builds acid from
[Ref.: #22945]	gamma-aminobutyric acid ChEBI	-	growth
[Ref.: #22945]	gelatin ChEBI	-	hydrolysis
[Ref.: #68368]	gelatin ChEBI	-	hydrolysis	* from API 20E
[Ref.: #22945]	gentiobiose ChEBI	-	growth
[Ref.: #22945]	gentisate ChEBI	+	growth
[Ref.: #22945]	glucose ChEBI	+	builds gas from
[Ref.: #119044]	glucose ChEBI	+	degradation
[Ref.: #22945]	glutarate ChEBI	-	growth
[Ref.: #22945]	glycerate ChEBI	+	growth
[Ref.: #22945]	glycerol ChEBI	+	growth
[Ref.: #22945]	histamine ChEBI	-	growth
[Ref.: #22945]	L-alanine ChEBI	+	growth
[Ref.: #22945]	L-arabinose ChEBI	+	growth
[Ref.: #68374]	L-arabinose ChEBI	+	builds acid from	* from API ID32E
[Ref.: #68368]	L-arabinose ChEBI	+	fermentation	* from API 20E
[Ref.: #22945]	L-arabitol ChEBI	-	growth
[Ref.: #68374]	L-arabitol ChEBI	-	builds acid from	* from API ID32E
[Ref.: #22945]	L-aspartate ChEBI	+	growth
[Ref.: #22945]	L-fucose ChEBI	+	growth
[Ref.: #22945]	L-glutamate ChEBI	+	growth
[Ref.: #22945]	L-malate ChEBI	+	growth
[Ref.: #22945]	L-proline ChEBI	+	growth
[Ref.: #22945]	L-rhamnose ChEBI	+	growth
[Ref.: #68374]	L-rhamnose ChEBI	+	builds acid from	* from API ID32E
[Ref.: #68368]	L-rhamnose ChEBI	+	fermentation	* from API 20E
[Ref.: #22945]	L-serine ChEBI	+	growth
[Ref.: #22945]	L-sorbose ChEBI	-	growth
[Ref.: #22945]	L-tartrate ChEBI	+	growth
[Ref.: #22945]	lactate ChEBI	+	growth
[Ref.: #22945]	lactose ChEBI	-	builds acid from
[Ref.: #22945]	lactose ChEBI	-	growth
[Ref.: #119044]	lactose ChEBI	-	fermentation
[Ref.: #22945]	lactulose ChEBI	-	growth
[Ref.: #68368]	lysine ChEBI	+	degradation	* from API 20E, API ID32E
[Ref.: #22945]	malonate ChEBI	-	growth
[Ref.: #119044]	malonate ChEBI	-	assimilation
[Ref.: #68374]	malonate ChEBI	-	assimilation	* from API ID32E
[Ref.: #22945]	maltitol ChEBI	-	growth
[Ref.: #22945]	maltose ChEBI	+	builds acid from
[Ref.: #22945]	maltose ChEBI	+	growth
[Ref.: #68374]	maltose ChEBI	+	builds acid from	* from API ID32E
[Ref.: #22945]	maltotriose ChEBI	+	growth
[Ref.: #22945]	mannitol ChEBI	+	builds acid from
[Ref.: #119044]	mannitol ChEBI	+	fermentation
[Ref.: #22945]	mannose ChEBI	+	builds acid from
[Ref.: #22945]	melezitose ChEBI	-	growth
[Ref.: #22945]	melibiose ChEBI	+	growth
[Ref.: #22945]	melibiose ChEBI	+	builds acid from
[Ref.: #68368]	melibiose ChEBI	+	fermentation	* from API 20E
[Ref.: #22945]	meso-tartrate ChEBI	+	growth
[Ref.: #22945]	methyl alpha-D-galactoside ChEBI	+	growth
[Ref.: #22945]	methyl alpha-D-glucopyranoside ChEBI	+	growth
[Ref.: #22945]	methyl beta-D-galactoside ChEBI	-	growth
[Ref.: #22945]	myo-inositol ChEBI	+	builds acid from
[Ref.: #22945]	myo-inositol ChEBI	+	growth
[Ref.: #68374]	myo-inositol ChEBI	+	builds acid from	* from API ID32E
[Ref.: #68368]	myo-inositol ChEBI	+	fermentation	* from API 20E
[Ref.: #22945]	N-acetyl-D-glucosamine ChEBI	+	growth
[Ref.: #22945]	nitrate ChEBI	+	reduction
[Ref.: #119044]	nitrate ChEBI	+	reduction
[Ref.: #119044]	nitrite ChEBI	+	reduction
[Ref.: #22945]	octanoate ChEBI	-	growth
[Ref.: #68368]	ornithine ChEBI	+	degradation	* from API 20E, API ID32E
[Ref.: #22945]	palatinose ChEBI	-	growth
[Ref.: #68374]	palatinose ChEBI	-	builds acid from	* from API ID32E
[Ref.: #22945]	phenylacetate ChEBI	-	growth
[Ref.: #68374]	Potassium 5-ketogluconate ChEBI	+	builds acid from	* from API ID32E
[Ref.: #22945]	propionate ChEBI	+	growth
[Ref.: #22945]	protocatechuate ChEBI	-	growth
[Ref.: #22945]	putrescine ChEBI	-	growth
[Ref.: #22945]	quinate ChEBI	-	growth
[Ref.: #22945]	raffinose ChEBI	-	growth
[Ref.: #22945]	raffinose ChEBI	-	builds acid from
[Ref.: #22945]	rhamnose ChEBI	+	builds acid from
[Ref.: #22945]	ribitol ChEBI	-	builds acid from
[Ref.: #22945]	ribitol ChEBI	-	growth
[Ref.: #68374]	ribitol ChEBI	-	builds acid from	* from API ID32E
[Ref.: #22945]	salicin ChEBI	-	builds acid from
[Ref.: #119044]	sodium thiosulfate ChEBI	+	builds gas from
[Ref.: #22945]	sorbitol ChEBI	+	builds acid from
[Ref.: #68374]	sorbitol ChEBI	+	builds acid from	* from API ID32E
[Ref.: #68368]	sorbitol ChEBI	+	fermentation	* from API 20E
[Ref.: #22945]	succinate ChEBI	+	growth
[Ref.: #22945]	sucrose ChEBI	-	builds acid from
[Ref.: #22945]	sucrose ChEBI	-	growth
[Ref.: #68374]	sucrose ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68368]	sucrose ChEBI	-	fermentation	* from API 20E
[Ref.: #22945]	trans-aconitate ChEBI	-	growth
[Ref.: #22945]	trehalose ChEBI	+	builds acid from
[Ref.: #68374]	trehalose ChEBI	-	builds acid from	* from API ID32E
[Ref.: #22945]	tricarballylate ChEBI	+	growth
[Ref.: #22945]	trigonelline ChEBI	-	growth
[Ref.: #22945]	tryptamine ChEBI	-	growth
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E, API ID32E
[Ref.: #22945]	turanose ChEBI	-	growth
[Ref.: #22945]	urea ChEBI	-	hydrolysis
[Ref.: #68368]	urea ChEBI	-	hydrolysis	* from API 20E, API ID32E
[Ref.: #22945]	xylitol ChEBI	+	builds acid from
[Ref.: #22945]	xylitol ChEBI	-	growth
	Only first 10 entries are displayed. Click here to see all.

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #119044]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	no	yes

	Metabolite	Production
[Ref.: #22945]	hydrogen sulfide ChEBI	yes
[Ref.: #22945]	indole ChEBI	no
[Ref.: #119044]	indole ChEBI	no
[Ref.: #68368]	hydrogen sulfide ChEBI	yes	* from API 20E
[Ref.: #68374]	indole ChEBI	no	* from API ID32E, API 20E

	Metabolite	Voges-Proskauer-test	Methylred-test	Indole test
[Ref.: #119044]	acetoin ChEBI	-
[Ref.: #119044]	glucose ChEBI		+
[Ref.: #68374]	indole ChEBI			-	* from API ID32E, API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #119044]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68374]	alpha-galactosidase	+	3.2.1.22	* from API ID32E
[Ref.: #68374]	alpha-glucosidase	-	3.2.1.20	* from API ID32E
[Ref.: #68374]	alpha-maltosidase	-		* from API ID32E
[Ref.: #68374]	arginine dihydrolase	+	3.5.3.6	* from API ID32E, API 20E
[Ref.: #22945]	beta-galactosidase	-	3.2.1.23
[Ref.: #119044]	beta-galactosidase	-	3.2.1.23
[Ref.: #68374]	beta-galactosidase	-	3.2.1.23	* from API ID32E, API 20E
[Ref.: #68374]	beta-glucosidase	-	3.2.1.21	* from API ID32E
[Ref.: #22945]	beta-glucuronidase	-	3.2.1.31
[Ref.: #68374]	beta-glucuronidase	-	3.2.1.31	* from API ID32E
[Ref.: #22945]	catalase	+	1.11.1.6
[Ref.: #119044]	catalase	+	1.11.1.6
[Ref.: #22945]	cytochrome oxidase	-	1.9.3.1
[Ref.: #68368]	cytochrome oxidase	-	1.9.3.1	* from API 20E
[Ref.: #22945]	gelatinase	-
[Ref.: #119044]	gelatinase	-
[Ref.: #68368]	gelatinase	-		* from API 20E
[Ref.: #68374]	L-aspartate arylamidase	-	3.4.11.21	* from API ID32E
[Ref.: #68374]	lipase	+		* from API ID32E
[Ref.: #22945]	lysine decarboxylase	+	4.1.1.18
[Ref.: #119044]	lysine decarboxylase	+	4.1.1.18
[Ref.: #68374]	lysine decarboxylase	+	4.1.1.18	* from API ID32E, API 20E
[Ref.: #68374]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API ID32E
[Ref.: #22945]	ornithine decarboxylase	+	4.1.1.17
[Ref.: #119044]	ornithine decarboxylase	+	4.1.1.17
[Ref.: #68374]	ornithine decarboxylase	+	4.1.1.17	* from API ID32E, API 20E
[Ref.: #119044]	oxidase	-
[Ref.: #119044]	phenylalanine ammonia-lyase	-	4.3.1.24
[Ref.: #119044]	tryptophan deaminase	-
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #22945]	urease	-	3.5.1.5
[Ref.: #119044]	urease	-	3.5.1.5
[Ref.: #68374]	urease	-	3.5.1.5	* from API ID32E, API 20E
	Only first 10 entries are displayed. Click here to see all.

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #6727]	18046	-	+	+	+	+	+	-	-	-	-	-	+	+	+	+	+	-	+	-	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
[Ref.: #6727]	17796	-	+	+	+	+	+	-	-	-	+	-	+	+	+	+	+	-	+	-	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
[Ref.: #6727]	16666	-	+	+	+	+	+	-	-	-	+	-	+	+	+	+	+	-	+	-	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
[Ref.: #6727]	16598	-	+	+	+	+	+	-	-	-	+/-	-	+	+	+	+	+	-	+	-	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API® ID32E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Ornithine decarboxylaseODC	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Urease/urea hydrolysisURE	Acid from L-arabitolLARL	Acid from D-galacturonic acidGAT	Acid from 5-Ketogluconate5KG	LipaseLIP	Phenol red (Acidification)RP	beta-Glucosidasebeta GLU	Acid from D-mannitolMAN	Acid from maltoseMAL	Acid from D-adonitolADO	Acid from palatinosePLE	beta-Glucuronidasebeta GUR	MalonateMNT	Indole productionIND	N-Acetyl-beta-Glucosaminidasebeta NAG	beta-Galactosidasebeta GAL	Acid from D-glucoseGLU	Acid from sucroseSAC	Acid from L-arabinoseLARA	Acid from D-arabitolDARL	alpha-Glucosidasealpha GLU	alpha-Galactosidasealpha GAL	Acid from trehaloseTRE	Acid from L-rhamnoseRHA	Acid from inositolINO	Acid from cellobioseCEL	Acid from sorbitolSOR	alpha-MaltosidasealphaMAL	L-aspartic acid arylamidaseAspA
[Ref.: #55324]	1532	+	+	+	-	-	-	+	+	+	-	+	+	-	-	-	-	-	-	-	+	-	+	-	-	+	-	+	+	-	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #119044]	Sample type/isolated from	Unknown source
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence AE006468 (>99% sequence identity) for Salmonella enterica from Microbeatlas

Aquatic Samples	2005
Soil Samples	1084
Animal Samples	23018
Plant Samples	1996
Total Samples	28103

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6727]	Biosafety level	2	Risk group (German classification) According to TRBA 466
[Ref.: #119044]	Biosafety level	2	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6727]	Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, complete genome	AE006468	4857450	ENA	99287 tax ID
[Ref.: #20218]	Salmonella enterica subsp. enterica strain DSM 17058 16S ribosomal RNA gene, partial sequence	HQ012017	936	ENA	59201 tax ID	*
[Ref.: #20218]	Salmonella enterica strain LT2 operon rrn, 16S-23S intergenic spacer region and tRNA-Glu gene, complete sequence	AF046813	393	ENA	28901 tax ID	*
[Ref.: #20218]	Salmonella enterica strain LT2 operon rrn, 16S-23S intergenic spacer region, tRNA-Ile and tRNA-Ala genes, complete sequences	AF046814	516	ENA	28901 tax ID	*
[Ref.: #20218]	Salmonella enterica subsp. enterica serovar Typhimurium gene for 16S rRNA, partial sequence	D12814	326	ENA	90371 tax ID	*
[Ref.: #20218]	Salmonella enterica subsp. enterica gene for 16S rRNA, partial sequence, strain: NBRC 13245	AB680380	1467	ENA	59201 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Salmonella enterica subsp. enterica serovar Typhimurium LT2	GCA_010649825	contig	GenBank	90371 tax ID	*
[Ref.: #66792]	Salmonella enterica FDAARGOS_94	GCA_001558355	complete	GenBank	28901 tax ID	*
[Ref.: #66792]	Salmonella enterica subsp. enterica serovar Typhimurium LT2	GCA_014334155	complete	GenBank	90371 tax ID	*
[Ref.: #66792]	Salmonella enterica subsp. enterica serovar Typhimurium LT2	GCA_002289225	scaffold	GenBank	90371 tax ID	*
[Ref.: #66792]	Salmonella enterica subsp. enterica NCTC12416	GCA_900456445	contig	GenBank	59201 tax ID	*
[Ref.: #66792]	Salmonella enterica strain FDAARGOS_878	28901.13769	complete	PATRIC	28901 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Salmonella enterica strain FDAARGOS_878 strain Not applicable PATRIC: 28901.13769
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 LT2 NCBI: GCA_000006945.1
[Ref.: #69480]	motile	yes	90.098	no
[Ref.: #69480]	flagellated	no	50	no
[Ref.: #69480]	gram-positive	no	98.71	no
[Ref.: #69480]	anaerobic	no	89.892	yes
[Ref.: #69480]	halophile	no	93.786	no
[Ref.: #69480]	spore-forming	no	93.964	no
[Ref.: #69480]	thermophile	no	98.767	yes
[Ref.: #69480]	glucose-util	yes	92.886	no
[Ref.: #69480]	aerobic	yes	70.242	yes
[Ref.: #69480]	glucose-ferment	yes	93.073	no
[Ref.: #69480]	motile	yes	90.098	no
[Ref.: #69480]	flagellated	no	50	no
[Ref.: #69480]	gram-positive	no	98.71	no
[Ref.: #69480]	anaerobic	no	89.892	yes
[Ref.: #69480]	halophile	no	93.786	no
[Ref.: #69480]	spore-forming	no	93.964	no
[Ref.: #69480]	thermophile	no	98.767	yes
[Ref.: #69480]	glucose-util	yes	92.886	no
[Ref.: #69480]	aerobic	yes	70.242	yes
[Ref.: #69480]	glucose-ferment	yes	93.073	no

Availability in culture collections External links

[Ref.: #6727]

Culture collection no.

DSM 17058, ATCC 43971, CIP 60.62, NCIMB 11450, NCTC 12416, CCUG 42060, JCM 32817, NBRC 13245

[Ref.: #74610]

SI-ID 46974

Literature:

	Title	Authors	Journal	DOI	Year
Phylogeny	Screening of Probiotic Activities of Lactobacilli Strains Isolated from Traditional Tibetan Qula, A Raw Yak Milk Cheese.	Zhang B, Wang Y, Tan Z, Li Z, Jiao Z, Huang Q	Asian-Australas J Anim Sci	10.5713/ajas.15.0849	2016	*
Pathogenicity	Characterization of Salmonella Typhimurium DNA gyrase as a target of quinolones.	Kongsoi S, Yokoyama K, Suprasert A, Utrarachkij F, Nakajima C, Suthienkul O, Suzuki Y	Drug Test Anal	10.1002/dta.1744	2014	*
	Power of Scanning Electron Microscopy and Energy Dispersive X-Ray Analysis in Rapid Microbial Detection and Identification at the Single Cell Level.	Khan MSI, Oh SW, Kim YJ	Sci Rep	10.1038/s41598-020-59448-8	2020	*
	Identification and antimicrobial activity detection of lactic Acid bacteria isolated from corn stover silage.	Li D, Ni K, Pang H, Wang Y, Cai Y, Jin Q	Asian-Australas J Anim Sci	10.5713/ajas.14.0439	2015	*

References

#6727

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17058

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#22945

Leon Le Minor, Michel Y. Popoff: Designation of Salmonella enterica sp. nov., nom. rev., as the Type and Only Species of the Genus Salmonella: Request for an Opinion. IJSEM 37: 465 - 468 1987 ( DOI 10.1099/00207713-37-4-465 , PubMed 10319519 )

#33584 ; Curators of the CIP;
#55324 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 42060

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#68374

Automatically annotated from API ID32E .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#74610

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID46974.1 )

#119044 Collection of Institut Pasteur ; Curators of the CIP; CIP 60.62
* These data were automatically processed and therefore are not curated

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Salmonella enterica strain FDAARGOS_878 strain Not applicable

Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 LT2

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