Name: Erwinia amylovora S59/5
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 4386

Type strain:

Species: Erwinia amylovora

Strain Designation: S59/5

Culture col. no.: DSM 30165, ATCC 15580, CCM 1114, IFO 12687, NBRC 12687, NCPPB 683, PDDCC 15, PDDCC 1540, CCUG 4906, IFO 13538

Strain history: <- ATCC <- R.A. Lelliott, S59/5

NCBI tax ID(s): 1219359 (strain), 552 (species)

SI-ID 2372

LMG 2024, ATCC 15580, CCM 1114, CCUG 4906, DSM 30165, ICMP 1540, IFO 12687, NCPPB 683, PDDCC 1540, IFO 13538, NBIMCC 2331, PDDCC 15, NCAIM B.01108, CIP 82.82, NBRC 12687, CFBP 1232, CCT 0577, ICMP 9404, ICMP 9403

Other strains from Erwinia amylovora

E. amylovora Ea1/79, DSM 17948
E. amylovora DSM 50901, ATCC 15357, ICPB EA137, ...
E. amylovora EGYI, DSM 101800
E. amylovora IMI 347365
E. amylovora IMI 347367

Section

Erwinia amylovora S59/5 is an aerobe, mesophilic plant pathogen that was isolated from pear .

aerobe
mesophilic
plant pathogen
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Enterobacterales*
	Family	*Erwiniaceae*
	Genus	*Erwinia*
	Species	**Erwinia amylovora**
	Full Scientific Name (LPSN)	Erwinia amylovora (Burrill 1882) Winslow et al. 1920 (Approved Lists 1980)

Synonym

"Micrococcus amylovorus"

Information on culture and growth conditions Culture and growth conditions

[Ref.: #9175]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #9175]

Culture medium growth

[Ref.: #9175]

Culture medium link

Medium recipe at MediaDive

[Ref.: #9175]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #9175]			growth	26 °C
[Ref.: #44806]			growth	26 °C

[Ref.: #9175]	Temperature range	mesophilic
[Ref.: #44806]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #44806]

Oxygen tolerance

aerobe

[Ref.: #9175]	Name of produced compound	ß lactamase
[Ref.: #9175]	Name of produced compound	sugars (reducing)

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #44806]

Fatty acid	Percentage	ECL
C16:1 ω7c	34.4	15.819
C16:0	30.3	16
C14:0 3OH/C16:1 ISO I	8.7	15.485
C18:1 ω7c /12t/9t	8.6	17.824
C12:0	5.4	12
C14:0	4.6	14
C17:0 CYCLO	3.8	16.888
Unidentified	1	13.947
C17:0	0.8	17
C18:2 ω6,9c/C18:0 ANTE	0.6	17.724
unknown 14.503	0.5	14.503
C15:0	0.4	15
C13:0 ISO 2OH	0.3	13.814
Unidentified	0.3	15.17
C18:0	0.3	18
C19:0 CYCLO ω9c	0.2	18.87

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9175]	Sample type/isolated from	pear (Pyris communis)
[Ref.: #9175]	Host species	Pyris communis
[Ref.: #9175]	Country	United Kingdom
[Ref.: #9175]	Country ISO 3 Code	GBR
[Ref.: #9175]	Continent	Europe

[Ref.: #44806]	Sample type/isolated from	Pear (Pyrus communis)
[Ref.: #44806]	Country	United Kingdom
[Ref.: #44806]	Country ISO 3 Code	GBR
[Ref.: #44806]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Tree
#Host Body-Site	#Plant	#Fruit (Seed)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FJ611856 (>99% sequence identity) for Erwinia from Microbeatlas

Aquatic Samples	255
Soil Samples	90
Animal Samples	1537
Plant Samples	278
Total Samples	2160

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #9175]	Pathogenicity (plant)	yes
[Ref.: #9175]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Erwinia amylovora strain BC2280 16S ribosomal RNA gene, partial sequence	AF140341	1480	ENA	552 tax ID	*
[Ref.: #20218]	Erwinia amylovora strain CFBP 1232 16S ribosomal RNA gene, partial sequence	FJ611856	1361	ENA	552 tax ID	*
[Ref.: #20218]	Erwinia amylovora 16S rRNA gene (strain DSM 30165)	AJ233410	1497	ENA	552 tax ID	*
[Ref.: #20218]	Erwinia amylovora LMG 2024 16S ribosomal RNA	Z96088	1481	ENA	552 tax ID	*
[Ref.: #20218]	Erwinia amylovora gene for 16S rRNA, partial sequence, strain: NBRC 12687	AB680317	1465	ENA	552 tax ID	*
[Ref.: #20218]	Erwinia amylovora gene for 16S ribosomal RNA, partial sequence, strain: NCPPB683	AB242877	1110	ENA	552 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Erwinia amylovora ATCC 15580	GCA_017161565	complete	GenBank	552 tax ID	*
[Ref.: #66792]	Erwinia amylovora NBRC 12687 = CFBP 1232 type strain: CFBP 1232	GCA_000367625	contig	GenBank	1219359 tax ID	*
[Ref.: #66792]	Erwinia amylovora NBRC 12687	1219359.3	wgs	PATRIC	1219359 tax ID	*
[Ref.: #66792]	Erwinia amylovora strain ATCC 15580	552.412	complete	PATRIC	552 tax ID	*
[Ref.: #66792]	Erwinia amylovora NBRC 12687	2588253839	draft	JGI IMG/M	1219359 tax ID	*
[Ref.: #66792]	Erwinia amylovora NBRC 12687 = CFBP 1232	GCA_000696075	contig	GenBank	1219359 tax ID	*

[Ref.: #9175]

GC-content

54.0 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Erwinia amylovora ATCC 15580 NCBI: GCA_017161565.1
[Ref.: #69480]	flagellated	no	57.586	no
[Ref.: #69480]	gram-positive	no	98.547	no
[Ref.: #69480]	anaerobic	no	98.394	yes
[Ref.: #69480]	aerobic	no	58.61	no
[Ref.: #69480]	halophile	no	80.372	no
[Ref.: #69480]	spore-forming	no	94.526	no
[Ref.: #69480]	thermophile	no	98.458	yes
[Ref.: #69480]	glucose-util	yes	95.832	no
[Ref.: #69480]	motile	yes	89.505	no
[Ref.: #69480]	glucose-ferment	yes	88.592	no

Availability in culture collections External links

[Ref.: #9175]

Culture collection no.

DSM 30165, ATCC 15580, CCM 1114, IFO 12687, NBRC 12687, NCPPB 683, PDDCC 15, PDDCC 1540, CCUG 4906, IFO 13538

[Ref.: #73877]

SI-ID 2372

References

#9175

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 30165

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#44806 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 4906

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#73877

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID2372.1 )

* These data were automatically processed and therefore are not curated

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Erwinia amylovora ATCC 15580

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