Name: Aestuariibacter halophilus JC2043
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 437

Type strain:

Species: Aestuariibacter halophilus

Strain Designation: JC2043

Culture col. no.: DSM 15266, KCTC 12043, IMSNU 14007, CIP 108412

Strain history: CIP <- 2004, DSMZ <- J. Chun: strain JC2043

NCBI tax ID(s): 226011 (species)

SI-ID 131410

DSM 15266, KCTC 12043, CIP 108412

Section

Aestuariibacter halophilus JC2043 is an obligate aerobe, halophilic, chemoheterotroph bacterium that forms circular colonies and was isolated from sediment sample of getbol.

colony-forming
Gram-negative
motile
rod-shaped
chemoheterotroph
halophilic
obligate aerobe
thermophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Alteromonadaceae*
	Genus	*Aestuariibacter*
	Species	**Aestuariibacter halophilus**
	Full Scientific Name (LPSN)	Aestuariibacter halophilus Yi et al. 2004

Information on morphological and physiological properties Morphology

[Ref.: #23286]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative
[Ref.: #119811]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.992

[Ref.: #23286]	Cell length	1.2-1.8 µm

[Ref.: #23286]	Cell width	0.5-0.6 µm

[Ref.: #23286]	Cell shape	rod-shaped
[Ref.: #119811]	Cell shape	rod-shaped

[Ref.: #23286]	Motility	yes
[Ref.: #119811]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %97.525

[Ref.: #23286]	Flagellum arrangement	monotrichous, polar

[Ref.: #23286]	Colony color	white, opaque
[Ref.: #23286]	Colony shape	circular
[Ref.: #23286]	Incubation period	2 days
[Ref.: #23286]	Cultivation medium used	MA

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5783]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #5783]

Culture medium growth

[Ref.: #5783]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5783]

Culture medium composition

expand / minimize

[Ref.: #23286]

Culture medium

CSY-3

[Ref.: #23286]

Culture medium growth

[Ref.: #23286]

Culture medium

Marine agar (MA)

[Ref.: #23286]

Culture medium growth

[Ref.: #23286]

Culture medium

SMM

[Ref.: #23286]

Culture medium growth

[Ref.: #33964]

Culture medium

Marine agar (MA)

[Ref.: #33964]

Culture medium growth

[Ref.: #33964]

Culture medium composition

expand / minimize

[Ref.: #119811]

Culture medium

CIP Medium 13

[Ref.: #119811]

Culture medium growth

[Ref.: #119811]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #5783]		growth	40 °C
[Ref.: #23286]		growth	15-40 °C
[Ref.: #23286]		optimum	40 °C
[Ref.: #33964]		growth	30 °C
[Ref.: #67771]		growth	40 °C
[Ref.: #119811]		growth	25-37 °C
[Ref.: #119811]	no	growth	5 °C
[Ref.: #119811]	no	growth	10 °C
[Ref.: #119811]	no	growth	41 °C

[Ref.: #5783]	Temperature range	thermophilic
[Ref.: #23286]	Temperature range	thermophilic
[Ref.: #33964]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	thermophilic
[Ref.: #119811]	Temperature range	mesophilic
[Ref.: #119811]	Temperature range	psychrophilic
[Ref.: #119811]	Temperature range	thermophilic

	pH	Kind of pH		pH
[Ref.: #23286]			optimum	7-8
[Ref.: #23286]			growth	6-11

Information on physiology and metabolism Physiology and metabolism

[Ref.: #23286]	Oxygen tolerance	obligate aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #23286]

Nutrition type

chemoheterotroph

[Ref.: #23286]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.979

[Ref.: #23286]

Halophily / tolerance level

halophilic

	Salt	Tested relation		Salt conc.
[Ref.: #23286]	NaCl		growth	1-8	%
[Ref.: #119811]	NaCl	no	growth	8	%
[Ref.: #119811]	NaCl	no	growth	6	%
[Ref.: #119811]	NaCl	no	growth	4	%
[Ref.: #119811]	NaCl	no	growth	2	%
[Ref.: #119811]	NaCl	no	growth	0	%
[Ref.: #23286]	Sea Salts (S9883)		optimum	2-3	%
[Ref.: #23286]	Sea Salts (S9883)		growth	0.5-11	%
[Ref.: #23286]	NaCl		growth	0	%
[Ref.: #23286]	NaCl		optimum	5-6	%
[Ref.: #119811]	NaCl	no	growth	10	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #23286]	2-propanol ChEBI	-	carbon source
[Ref.: #23286]	acetamide ChEBI	-	carbon source
[Ref.: #23286]	acetate ChEBI	+	carbon source
[Ref.: #23286]	adenine ChEBI	-	carbon source
[Ref.: #23286]	agar ChEBI	-	degradation
[Ref.: #23286]	alginate ChEBI	-	degradation
[Ref.: #23286]	benzoate ChEBI	-	carbon source
[Ref.: #23286]	casein	+	degradation
[Ref.: #23286]	cellobiose ChEBI	-	carbon source
[Ref.: #23286]	cellulose ChEBI	-	degradation
[Ref.: #23286]	chitin ChEBI	-	degradation
[Ref.: #23286]	citrate ChEBI	-	carbon source
[Ref.: #23286]	D-fructose ChEBI	-	carbon source
[Ref.: #23286]	D-galactose ChEBI	-	carbon source
[Ref.: #23286]	D-glucose ChEBI	+	carbon source
[Ref.: #23286]	D-mannose ChEBI	-	carbon source
[Ref.: #23286]	D-ribose ChEBI	+	carbon source
[Ref.: #23286]	D-xylose ChEBI	-	carbon source
[Ref.: #23286]	dna ChEBI	+	degradation
[Ref.: #23286]	egg yolk	+	degradation
[Ref.: #23286]	esculin ChEBI	+	degradation
[Ref.: #119811]	esculin ChEBI	+	hydrolysis
[Ref.: #23286]	ethanol ChEBI	-	carbon source
[Ref.: #23286]	gelatin ChEBI	+	degradation
[Ref.: #23286]	glycine ChEBI	-	carbon source
[Ref.: #23286]	inulin ChEBI	-	carbon source
[Ref.: #23286]	L-arginine ChEBI	+	carbon source
[Ref.: #23286]	L-cysteine ChEBI	-	carbon source
[Ref.: #23286]	L-lysine ChEBI	-	carbon source
[Ref.: #23286]	L-ornithine ChEBI	-	carbon source
[Ref.: #23286]	L-rhamnose ChEBI	-	carbon source
[Ref.: #23286]	lactose ChEBI	-	carbon source
[Ref.: #23286]	myo-inositol ChEBI	-	carbon source
[Ref.: #23286]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #23286]	nitrate ChEBI	+	reduction
[Ref.: #119811]	nitrate ChEBI	+	reduction
[Ref.: #119811]	nitrite ChEBI	-	reduction
[Ref.: #23286]	raffinose ChEBI	-	carbon source
[Ref.: #23286]	salicin ChEBI	-	carbon source
[Ref.: #23286]	salicylate ChEBI	-	carbon source
[Ref.: #119811]	sodium thiosulfate ChEBI	-	builds gas from
[Ref.: #23286]	sorbitol ChEBI	-	carbon source
[Ref.: #23286]	starch ChEBI	+	degradation
[Ref.: #23286]	succinate ChEBI	-	carbon source
[Ref.: #23286]	sucrose ChEBI	+	carbon source
[Ref.: #23286]	thiamine ChEBI	-	carbon source
[Ref.: #23286]	tween 80 ChEBI	+	degradation
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #23286]	fluorescein ChEBI	no
[Ref.: #23286]	hydrogen sulfide ChEBI	no
[Ref.: #23286]	indole ChEBI	no
[Ref.: #119811]	indole ChEBI	no
[Ref.: #23286]	polyhydroxybutyrate ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #23286]	acid phosphatase	+	3.1.3.2
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #119811]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #23286]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #23286]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #23286]	alpha-fucosidase	-	3.2.1.51
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #23286]	alpha-galactosidase	-	3.2.1.22
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #23286]	alpha-glucosidase	-	3.2.1.20
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #23286]	alpha-mannosidase	-	3.2.1.24
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #119811]	amylase	+
[Ref.: #23286]	arginine dihydrolase	-	3.5.3.6
[Ref.: #23286]	beta-galactosidase	-	3.2.1.23
[Ref.: #119811]	beta-galactosidase	-	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #23286]	beta-glucosidase	+	3.2.1.21
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #23286]	beta-glucuronidase	-	3.2.1.31
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #119811]	caseinase	+	3.4.21.50
[Ref.: #23286]	catalase	+	1.11.1.6
[Ref.: #119811]	catalase	+	1.11.1.6
[Ref.: #23286]	cystine arylamidase	-	3.4.11.3
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #23286]	cytochrome oxidase	+	1.9.3.1
[Ref.: #119811]	DNase	+
[Ref.: #23286]	esterase (C 4)	+
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #23286]	esterase lipase (C 8)	+
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #119811]	gelatinase	+
[Ref.: #119811]	lecithinase	-
[Ref.: #23286]	leucine arylamidase	+	3.4.11.1
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #119811]	lipase	-
[Ref.: #23286]	lipase (C 14)	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #119811]	lysine decarboxylase	-	4.1.1.18
[Ref.: #23286]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #23286]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #119811]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #119811]	oxidase	+
[Ref.: #119811]	protease	-
[Ref.: #23286]	trypsin	+	3.4.21.4
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #119811]	tryptophan deaminase	-
[Ref.: #119811]	tween esterase	-
[Ref.: #23286]	urease	-	3.5.1.5
[Ref.: #119811]	urease	-	3.5.1.5
[Ref.: #23286]	valine arylamidase	-
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #119811]	11163	-	+	+	+	-	+	+	+	+	-	+	+	-	-	-	+	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5783]	Sample type/isolated from	sediment sample of getbol
[Ref.: #5783]	Geographic location (country and/or sea, region)	Korea, Ganghwa island
[Ref.: #5783]	Country	Republic of Korea
[Ref.: #5783]	Country ISO 3 Code	KOR
[Ref.: #5783]	Continent	Asia

[Ref.: #23286]	Sample type/isolated from	sediment sample of getbol, the Korean tidal flat
[Ref.: #23286]	Sampling date	August 2002
[Ref.: #23286]	Geographic location (country and/or sea, region)	Ganghwa island
[Ref.: #23286]	Country	Republic of Korea
[Ref.: #23286]	Country ISO 3 Code	KOR
[Ref.: #23286]	Continent	Asia
[Ref.: #23286]	Geographic location	37.5922°/126.4570°
[Ref.: #23286]	Isolation/enrichment procedure	diluted with sterilized artificial sea water

[Ref.: #67771]	Sample type/isolated from	From a sediment sample of getbol, the Korean tidal flat
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia

[Ref.: #119811]	Sample type/isolated from	Environment, Sediment sample of getbol (korean tidal flat)
[Ref.: #119811]	Geographic location (country and/or sea, region)	Ganghwa Island
[Ref.: #119811]	Country	Republic of Korea
[Ref.: #119811]	Country ISO 3 Code	KOR
[Ref.: #119811]	Continent	Asia
[Ref.: #119811]	Isolation date	2002
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Sediment
#Environmental	#Terrestrial	#Tidal flat

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5783]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #119811]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #5783]	Aestuariibacter halophilus strain JC2043 16S ribosomal RNA gene, partial sequence	AY207503	1455	ENA	226011 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Aestuariibacter halophilus JC2043	GCA_020687825	scaffold	GenBank	226011 tax ID	*

[Ref.: #23286]

GC-content

54.00 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Aestuariibacter halophilus JC2043 NCBI: GCA_020687825.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Aestuariibacter halophilus JC2043 NCBI: GCA_020687825.1
[Ref.: #69480]	flagellated	yes	90.277	yes
[Ref.: #69480]	gram-positive	no	99.107	yes
[Ref.: #69480]	anaerobic	no	96.94	yes
[Ref.: #69480]	aerobic	yes	83.827	no
[Ref.: #69480]	halophile	yes	59.849	no
[Ref.: #69480]	spore-forming	no	97.157	no
[Ref.: #69480]	motile	yes	90.545	no
[Ref.: #69480]	thermophile	no	99.517	no
[Ref.: #69480]	glucose-util	yes	88.631	no
[Ref.: #69480]	glucose-ferment	no	77.69	no

Availability in culture collections External links

[Ref.: #5783]

Culture collection no.

DSM 15266, KCTC 12043, IMSNU 14007, CIP 108412

[Ref.: #70116]

SI-ID 131410

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Draft Genome Sequence of Aestuariibacter halophilus Type Strain JC2043.	Emsley SA, Pfannmuller KM, Ushijima B, Saw JH, Gaylor MO, Videau P	Microbiol Resour Announc	10.1128/MRA.01093-21	2021	*
Phylogeny	Aestuariibacter litoralis sp. nov., isolated from a sandy sediment of the Sea of Japan.	Tanaka N, Romanenko LA, Frolova GM, Mikhailov VV	Int J Syst Evol Microbiol	10.1099/ijs.0.012435-0	2009	*
Phylogeny	Aestuariibacter salexigens gen. nov., sp. nov. and Aestuariibacter halophilus sp. nov., isolated from tidal flat sediment, and emended description of Alteromonas macleodii.	Yi H, Bae KS, Chun J	Int J Syst Evol Microbiol	10.1099/ijs.0.02798-0	2004	*

References

#5783

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15266

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#23286

Hana Yi, Kyung Sook Bae, Jongsik Chun: Aestuariibacter salexigens gen. nov., sp. nov. and Aestuariibacter halophilus sp. nov., isolated from tidal flat sediment, and emended description of Alteromonas macleodii. IJSEM 54: 571 - 576 2004 ( DOI 10.1099/ijs.0.02798-0 , PubMed 15023977 )

#33964 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#68382

Automatically annotated from API zym .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#70116

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID131410.1 )

#119811 Collection of Institut Pasteur ; Curators of the CIP; CIP 108412
* These data were automatically processed and therefore are not curated

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