Name: Acidovorax soli BL21
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 2904

Type strain:

Species: Acidovorax soli

Strain Designation: BL21

Culture col. no.: DSM 25157, JCM 15909, KCTC 22399

Strain history: <- JW Bae, KRIBB

NCBI tax ID(s): 592050 (species)

SI-ID 399905

DSM 25157

Other strains from Acidovorax soli

A. soli CCUG 49687
A. soli CCUG 63251

Section

Acidovorax soli BL21 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from soil of landfill site.

Gram-negative
rod-shaped
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Comamonadaceae*
	Genus	*Acidovorax*
	Species	**Acidovorax soli**
	Full Scientific Name (LPSN)	Acidovorax soli Choi et al. 2010

Information on morphological and physiological properties Morphology

[Ref.: #29733]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.996

[Ref.: #29733]	Cell length	1.3 µm

[Ref.: #29733]	Cell width	0.5 µm

[Ref.: #29733]	Cell shape	rod-shaped

[Ref.: #29733]	Motility	no
[Ref.: #69480]	Motility	yes Confidence in %96.114

[Ref.: #29733]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #17919]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #17919]

Culture medium growth

[Ref.: #17919]

Culture medium link

Medium recipe at MediaDive

[Ref.: #17919]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #17919]	growth	28 °C
[Ref.: #29733]	growth	10-42 °C
[Ref.: #29733]	optimum	30 °C
[Ref.: #67770]	growth	30 °C
[Ref.: #67771]	growth	30 °C

[Ref.: #17919]	Temperature range	mesophilic
[Ref.: #29733]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #29733]			optimum	7
[Ref.: #29733]			growth	06-09

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29733]	Oxygen tolerance	anaerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.98

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29733]		NaCl		growth	0-1	%

[Ref.: #29733]

Observation

aggregates in chains

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29733]	alanine ChEBI	+	carbon source
[Ref.: #29733]	asparagine ChEBI	+	carbon source
[Ref.: #29733]	aspartate ChEBI	+	carbon source
[Ref.: #29733]	formate ChEBI	+	carbon source
[Ref.: #29733]	glucose ChEBI	+	carbon source
[Ref.: #29733]	glutamate ChEBI	+	carbon source
[Ref.: #29733]	lactate ChEBI	+	carbon source
[Ref.: #29733]	methyl pyruvate ChEBI	+	carbon source
[Ref.: #29733]	nitrate ChEBI	+	reduction
[Ref.: #29733]	serine ChEBI	+	carbon source
[Ref.: #29733]	threonine ChEBI	+	carbon source
[Ref.: #29733]	tween 40 ChEBI	+	carbon source
[Ref.: #29733]	tween 80 ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17919]	Sample type/isolated from	soil of landfill site
[Ref.: #17919]	Geographic location (country and/or sea, region)	Pohang
[Ref.: #17919]	Country	Republic of Korea
[Ref.: #17919]	Country ISO 3 Code	KOR
[Ref.: #17919]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Landfill site
[Ref.: #67770]	Geographic location (country and/or sea, region)	Pohang
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From soil
[Ref.: #67771]	Geographic location (country and/or sea, region)	Pohang
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Waste	#Landfill
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FJ599672 (>99% sequence identity) for Acidovorax from Microbeatlas

Aquatic Samples	321
Soil Samples	88
Animal Samples	170
Plant Samples	33
Total Samples	612

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #17919]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #17919]	Acidovorax soli strain BL21 16S ribosomal RNA gene, partial sequence	FJ599672	1433	ENA	592050 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Acidovorax soli DSM 25157	GCA_900107605	contig	GenBank	592050 tax ID
[Ref.: #66792]	Acidovorax soli strain DSM 25157	592050.4	wgs	PATRIC	592050 tax ID	*
[Ref.: #66792]	Acidovorax soli DSM 25157	2675903230	draft	JGI IMG/M	592050 tax ID	*

[Ref.: #17919]	GC-content	60.9 mol%
[Ref.: #67770]	GC-content	60.9 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Acidovorax soli strain DSM 25157 PATRIC: 592050.5
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Acidovorax soli strain DSM 25157 PATRIC: 592050.4
[Ref.: #69480]	gram-positive	no	98.849	yes
[Ref.: #69480]	anaerobic	no	98.239	no
[Ref.: #69480]	halophile	no	95.374	yes
[Ref.: #69480]	spore-forming	no	96.259	no
[Ref.: #69480]	glucose-util	no	57.507	yes
[Ref.: #69480]	thermophile	no	98.245	no
[Ref.: #69480]	flagellated	no	89.898	yes
[Ref.: #69480]	aerobic	yes	90.965	no
[Ref.: #69480]	motile	no	82.411	yes
[Ref.: #69480]	glucose-ferment	no	87.881	no

Availability in culture collections External links

[Ref.: #17919]

Culture collection no.

DSM 25157, JCM 15909, KCTC 22399

[Ref.: #72427]

SI-ID 399905

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Acidovorax soli sp. nov., isolated from landfill soil.	Choi JH, Kim MS, Roh SW, Bae JW	Int J Syst Evol Microbiol	10.1099/ijs.0.019661-0	2010	*

References

#17919

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25157

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29733

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26115 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#72427

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID399905.1 )

#26115

IJSEM 2715 2010 ( DOI 10.1099/ijs.0.019661-0 , PubMed 20061503 )

* These data were automatically processed and therefore are not curated

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Acidovorax soli strain DSM 25157

Acidovorax soli strain DSM 25157

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