Name: Clostridium paradoxum JW-YL-7
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 2770

Type strain:

Species: Clostridium paradoxum

Strain Designation: JW-YL-7

Culture col. no.: DSM 7308, ATCC 51510, CIP 105527

Strain history: <- J. Wiegel, JW-YL-7

NCBI tax ID(s): 1121328 (strain), 29346 (species)

SI-ID 43026

ATCC 51510, DSM 7308, CIP 105527

Other strains from Clostridium paradoxum

C. paradoxum JW/YL-NZ11, DSM 8681

Section

Clostridium paradoxum JW-YL-7 is an anaerobe, spore-forming, thermophilic bacterium that was isolated from aeration pool, sewage plant.

Gram-positive
spore-forming
anaerobe
thermophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Clostridiaceae*
	Genus	*Clostridium*
	Species	**Clostridium paradoxum**
	Full Scientific Name (LPSN)	Clostridium paradoxum Li et al. 1993

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %99.719

Information on culture and growth conditions Culture and growth conditions

[Ref.: #3110]

Culture medium

YTG MEDIUM (DSMZ Medium 616)

[Ref.: #3110]

Culture medium growth

[Ref.: #3110]

Culture medium link

Medium recipe at MediaDive

[Ref.: #3110]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #3110]			growth	55 °C

[Ref.: #3110]	Temperature range	thermophilic
[Ref.: #69480]	Temperature range	thermophilic Confidence in %98.984

Information on physiology and metabolism Physiology and metabolism

[Ref.: #3110]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %99.999

[Ref.: #69480]

Ability of spore formation

yes Confidence in %99.998

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #3110]	Sample type/isolated from	aeration pool, sewage plant
[Ref.: #3110]	Geographic location (country and/or sea, region)	Georgia, Athens
[Ref.: #3110]	Country	USA
[Ref.: #3110]	Country ISO 3 Code	USA
[Ref.: #3110]	Continent	North America
* marker position based on {}

Isolation sources categories

#Engineered	#Waste	#Wastewater
#Engineered	#Waste	#Water treatment plant

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #3110]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #3110]	C.paradoxum 16S rRNA gene (clone para24)	Z69929	1553	ENA	1121328 tax ID
[Ref.: #20218]	C.paradoxum 16S rRNA gene (clone para1)	Z69927	1567	ENA	29346 tax ID	*
[Ref.: #20218]	C.paradoxum 16S rRNA gene (clone para11)	Z69928	1566	ENA	29346 tax ID	*
[Ref.: #20218]	C.paradoxum 16S rRNA gene (clone para25)	Z69930	1572	ENA	29346 tax ID	*
[Ref.: #20218]	C.paradoxum 16S rRNA gene (clone para27)	Z69931	1571	ENA	29346 tax ID	*
[Ref.: #20218]	C.paradoxum 16S rRNA gene (clone para39)	Z69932	1589	ENA	29346 tax ID	*
[Ref.: #20218]	C.paradoxum 16S rRNA gene (clone para83)	Z69933	1574	ENA	29346 tax ID	*
[Ref.: #20218]	C.paradoxum 16S rRNA gene (clone para89)	Z69934	1574	ENA	29346 tax ID	*
[Ref.: #20218]	C.paradoxum 16S rRNA gene (clone para32)	Z69935	1547	ENA	29346 tax ID	*
[Ref.: #20218]	C.paradoxum 16S rRNA gene (clone para78)	Z69936	1547	ENA	29346 tax ID	*
[Ref.: #20218]	C.paradoxum 16S rRNA gene (clone para82)	Z69937	1564	ENA	29346 tax ID	*
[Ref.: #20218]	C.paradoxum 16S rRNA gene (clone para85)	Z69938	1548	ENA	29346 tax ID	*
[Ref.: #20218]	C.paradoxum 16S rRNA gene (clone para99)	Z69939	1573	ENA	29346 tax ID	*
[Ref.: #20218]	C.paradoxum 16S rRNA gene (clone para23)	Z69940	1452	ENA	29346 tax ID	*
[Ref.: #20218]	C.paradoxum 16S rRNA gene (clone para2)	Z69941	1449	ENA	29346 tax ID	*
[Ref.: #20218]	C.paradoxum 16S rRNA gene	Z69942	1410	ENA	29346 tax ID	*
[Ref.: #20218]	Clostridium paradoxum small subunit ribosomal RNA	L06838	1467	ENA	29346 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	[Clostridium] paradoxum JW-YL-7 = DSM 7308	GCA_001584565	contig	GenBank	1121328 tax ID	*
[Ref.: #66792]	[Clostridium] paradoxum JW-YL-7 = DSM 7308	GCA_900142555	scaffold	GenBank	1121328 tax ID	*
[Ref.: #66792]	[Clostridium] paradoxum JW-YL-7 = DSM 7308	1121328.3	wgs	PATRIC	1121328 tax ID	*
[Ref.: #66792]	[Clostridium] paradoxum JW-YL-7 = DSM 7308	1121328.12	wgs	PATRIC	1121328 tax ID	*
[Ref.: #66792]	Clostridium paradoxum DSM 7308	2599185174	draft	JGI IMG/M	1121328 tax ID	*
[Ref.: #66792]	Clostridium paradoxum JW-YL-7	2690315891	draft	JGI IMG/M	1121328 tax ID	*

[Ref.: #3110]

GC-content

30.0 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: [Clostridium] paradoxum JW-YL-7 = DSM 7308 PATRIC: 1121328.3
[Ref.: #69481]	spore-forming	yes	81	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: [Clostridium] paradoxum JW-YL-7 = DSM 7308 DSM 7308 NCBI: GCA_900142555.1
[Ref.: #69480]	motile	yes	81.868	no
[Ref.: #69480]	flagellated	no	77.153	no
[Ref.: #69480]	gram-positive	yes	66.229	no
[Ref.: #69480]	anaerobic	yes	99.056	yes
[Ref.: #69480]	aerobic	no	97.472	no
[Ref.: #69480]	halophile	no	68.209	no
[Ref.: #69480]	spore-forming	yes	82.35	no
[Ref.: #69480]	thermophile	yes	99.499	yes
[Ref.: #69480]	glucose-util	yes	88.84	no
[Ref.: #69480]	glucose-ferment	yes	60.104	no

Availability in culture collections External links

[Ref.: #3110]

Culture collection no.

DSM 7308, ATCC 51510, CIP 105527

[Ref.: #72300]

SI-ID 43026

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Near-Complete Genome Sequence of Clostridium paradoxum Strain JW-YL-7.	Lancaster WA, Utturkar SM, Poole FL, Klingeman DM, Elias DA, Adams MW, Brown SD	Genome Announc	10.1128/genomeA.00229-16	2016	*
Phylogeny	Clostridium paradoxum DSM 7308T contains multiple 16S rRNA genes with heterogeneous intervening sequences.	Rainey FA, Ward-Rainey NL, Janssen PH, Hippe H, Stackebrandt E	Microbiology (Reading)	10.1099/13500872-142-8-2087	1996	*

References

#3110

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 7308

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#72300

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID43026.1 )

* These data were automatically processed and therefore are not curated

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[Clostridium] paradoxum JW-YL-7 = DSM 7308

[Clostridium] paradoxum JW-YL-7 = DSM 7308 DSM 7308

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