Name: Clostridium baratii 2227
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 2544

Type strain:

Species: Clostridium baratii

Strain Designation: 2227, 10023

Culture col. no.: DSM 601, ATCC 27638, VPI 4443, CCUG 24033, CIP 104306, JCM 1385, BCRC 14541, KCTC 5131

Strain history: CIP <- 1994, J.P. Carlier, Inst. Pasteur, Paris, France: strain 10023 <- ATCC <- S. Nakamura: strain 2227, Clostridium paraperfringens <- Inst. Pasteur, Paris, France, Inflabis barati

NCBI tax ID(s): 1561 (species)

SI-ID 39101

ATCC 27638, CIP 104306, CCUG 24033, DSM 601, JCM 1385, CCRC 14541, BCRC 14541, KCTC 5131

Other strains from Clostridium baratii

C. baratii G (KZ), DSM 602, ATCC 27639, NCTC ...
C. baratii 1116D, Prévot, 1116D, Prévot, ...
C. baratii JCM 31253

Section

Clostridium baratii 2227 is an anaerobe, mesophilic bacterium that was isolated from canine renal epithelioma.

anaerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Clostridiaceae*
	Genus	*Clostridium*
	Species	**Clostridium baratii**
	Full Scientific Name (LPSN)	Clostridium baratii corrig. (Prévot 1938) Holdeman and Moore 1970 (Approved Lists 1980)

	Synonym	"Inflabilis* barati"*
	Synonym	Clostridium paraperfringens
	Synonym	Clostridium perenne
	Synonym	Clostridium barati
	Synonym	"Acuformis* perennis"*

Information on culture and growth conditions Culture and growth conditions

[Ref.: #313]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #313]

Culture medium growth

[Ref.: #313]

Culture medium link

Medium recipe at MediaDive

[Ref.: #313]

Culture medium composition

expand / minimize

[Ref.: #313]

Culture medium

FASTIDIOUS ANAEROBE BROTH (DSMZ Medium 1203a)

[Ref.: #313]

Culture medium growth

[Ref.: #313]

Culture medium link

Medium recipe at MediaDive

[Ref.: #313]

Culture medium composition

expand / minimize

[Ref.: #41364]

Culture medium

MEDIUM 20 - for Anaerobic bacteria

[Ref.: #41364]

Culture medium growth

[Ref.: #41364]

Culture medium composition

expand / minimize

[Ref.: #116731]

Culture medium

CIP Medium 20

[Ref.: #116731]

Culture medium growth

[Ref.: #116731]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #313]	growth	37 °C
[Ref.: #41364]	growth	37 °C
[Ref.: #67770]	growth	37 °C

[Ref.: #313]	Temperature range	mesophilic
[Ref.: #41364]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #313]

Oxygen tolerance

anaerobe

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68367]	cellobiose ChEBI	+	builds acid from	* from API 20A
[Ref.: #68367]	D-glucose ChEBI	+	builds acid from	* from API 20A
[Ref.: #68367]	D-mannitol ChEBI	-	builds acid from	* from API 20A
[Ref.: #68367]	D-mannose ChEBI	+	builds acid from	* from API 20A
[Ref.: #68367]	D-xylose ChEBI	+	builds acid from	* from API 20A
[Ref.: #68367]	esculin ChEBI	+	hydrolysis	* from API 20A
[Ref.: #68367]	gelatin ChEBI	-	hydrolysis	* from API 20A
[Ref.: #68367]	glycerol ChEBI	+	builds acid from	* from API 20A
[Ref.: #68367]	L-arabinose ChEBI	-	builds acid from	* from API 20A
[Ref.: #68367]	L-rhamnose ChEBI	-	builds acid from	* from API 20A
[Ref.: #68367]	lactose ChEBI	+	builds acid from	* from API 20A
[Ref.: #68367]	maltose ChEBI	+	builds acid from	* from API 20A
[Ref.: #68367]	raffinose ChEBI	-	builds acid from	* from API 20A
[Ref.: #68367]	salicin ChEBI	+	builds acid from	* from API 20A
[Ref.: #68367]	sorbitol ChEBI	-	builds acid from	* from API 20A
[Ref.: #68367]	sucrose ChEBI	+	builds acid from	* from API 20A
[Ref.: #68367]	trehalose ChEBI	-	builds acid from	* from API 20A
[Ref.: #68367]	tryptophan ChEBI	-	energy source	* from API 20A
[Ref.: #68367]	urea ChEBI	-	hydrolysis	* from API 20A
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68367]		indole ChEBI	no	* from API 20A

	Physiological tests	Metabolite	Indole test
[Ref.: #68367]		indole ChEBI	-	* from API 20A

	Enzyme	Enzyme activity	EC number
[Ref.: #68367]	beta-glucosidase	+	3.2.1.21	* from API 20A
[Ref.: #68367]	gelatinase	-		* from API 20A
[Ref.: #68367]	urease	-	3.5.1.5	* from API 20A

API® 20A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Indole productionIND	Urease/urea hydrolysisURE	Acid from D-glucoseGLU	Acid from D-mannitolMAN	Acid from lactoseLAC	Acid from sucroseSAC	Acid from maltoseMAL	Acid from salicinSAL	Acid from D-xyloseXYL	Acid from L-arabinoseARA	Gelatinase/gelatin hydrolysisGEL	Esculin hydrolysis/beta-glucosidaseESC	Acid from glycerolGLY	Acid from cellobioseCEL	Acid from D-mannoseMNE	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from sorbitolSOR	Acid from L-rhamnoseRHA	Acid from trehaloseTRE	CatalaseCAT	Spores presentSPOR	GramGRAM	Morphology coccus="+" rod="-"COCC
[Ref.: #313]	2183	-	-	+	-	+	+	+	+	+	-	-	+	+	+	+	+/-	-	-	-	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #313]	Sample type/isolated from	canine renal epithelioma

[Ref.: #47905]	Sample type/isolated from	Canine renal epithelioma

[Ref.: #67770]	Sample type/isolated from	Hog liver

[Ref.: #116731]	Sample type/isolated from	Animal, Canine, renal epithelioma
* marker position based on {}

Isolation sources categories

#Host	#Mammals	#Canidae (Dog)
#Host Body-Site	#Urogenital tract	#Kidney

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LC036313 (>99% sequence identity) for Clostridium baratii from Microbeatlas

Aquatic Samples	927
Soil Samples	585
Animal Samples	10123
Plant Samples	218
Total Samples	11853

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #313]	Biosafety level	2	Risk group (German classification) According to TRBA 466
[Ref.: #116731]	Biosafety level	2	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #313]	C.barati (ATCC27638) rrn gene for 16S rRNA	X68174	1515	ENA	1561 tax ID
[Ref.: #67770]	Clostridium baratii gene for 16S ribosomal RNA, partial sequence, strain: JCM 1385	LC036313	1454	ENA	1561 tax ID

Availability in culture collections External links

[Ref.: #313]

Culture collection no.

DSM 601, ATCC 27638, VPI 4443, CCUG 24033, CIP 104306, JCM 1385, BCRC 14541, KCTC 5131

[Ref.: #72078]

SI-ID 39101

References

#313	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 601

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#41364 ; Curators of the CIP;
#47905 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 24033
#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68367

Automatically annotated from API 20A .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#72078

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID39101.1 )

#116731 Collection of Institut Pasteur ; Curators of the CIP; CIP 104306
* These data were automatically processed and therefore are not curated

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