Name: Dickeya solani DSM 28711
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 23909

Type strain:

Species: Dickeya solani

Culture col. no.: DSM 28711, LMG 25993, NCPPB 4479, IPO 2222

Strain history: <- J.M. van der Wolf, Plant Res. International, Wageningen, Netherlands; IPO 2222

NCBI tax ID(s): 1225786 (strain), 1089444 (species)

SI-ID 370474

LMG 25993, NCPPB4479, NCPPB 4575, DSM 28711

Section

Dickeya solani DSM 28711 is a mesophilic plant pathogen that was isolated from potato plant showing symptoms of blackleg and slow wilt.

mesophilic
plant pathogen
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Enterobacterales*
	Family	*Pectobacteriaceae*
	Genus	*Dickeya*
	Species	**Dickeya solani**
	Full Scientific Name (LPSN)	Dickeya solani van der Wolf et al. 2014

Information on morphological and physiological properties Morphology

Multimedia content

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Intellectual property rights:

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Caption:

DSM 28711 on medium 535 at 28 °C

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Intellectual property rights:

Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH

Information on culture and growth conditions Culture and growth conditions

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Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #20529]			growth	25 °C

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Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68368]	amygdalin ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	arginine ChEBI	-	hydrolysis	* from API 20E
[Ref.: #68368]	citrate ChEBI	+	assimilation	* from API 20E
[Ref.: #68368]	D-glucose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	D-mannitol ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	gelatin ChEBI	+	hydrolysis	* from API 20E
[Ref.: #68368]	L-arabinose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	L-rhamnose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	lysine ChEBI	-	degradation	* from API 20E
[Ref.: #68368]	melibiose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	nitrate ChEBI	-	reduction	* from API 20E
[Ref.: #68368]	ornithine ChEBI	-	degradation	* from API 20E
[Ref.: #68368]	sorbitol ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	sucrose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	tryptophan ChEBI	+	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	-	hydrolysis	* from API 20E
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #68368]	dinitrogen ChEBI	yes	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	yes	* from API 20E
[Ref.: #68368]	nitrite ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Indole test
[Ref.: #68368]		indole ChEBI	+	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	arginine dihydrolase	-	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	+	3.2.1.23	* from API 20E
[Ref.: #68368]	gelatinase	+		* from API 20E
[Ref.: #68368]	lysine decarboxylase	-	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	-	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	-	3.5.1.5	* from API 20E

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #20529]	17994	+	-	-	-	+	-	-	-	+	-	+	+	+	-	-	+	+	+	+	+	-	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
[Ref.: #20529]	17646	+	-	-	-	+	-	-	-	+	+	+	+	+	+	-	+	+	+	+	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
[Ref.: #20529]	16692	+	-	-	-	+	-	-	-	+	+	+	+	+	+	-	+	+	+	+	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #20529]	Sample type/isolated from	potato plant (Melody) showing symptoms of blackleg and slow wilt
[Ref.: #20529]	Country	Netherlands
[Ref.: #20529]	Country ISO 3 Code	NLD
[Ref.: #20529]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Infection	#Disease	-
#Host	#Plants	#Herbaceous plants (Grass,Crops)

What are isolation sources categories?

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Global distribution of 16S sequence KF639914 (>99% sequence identity) for Dickeya solani from Microbeatlas

Aquatic Samples	28
Soil Samples	4
Animal Samples	68
Plant Samples	13
Total Samples	113

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #20529]	Pathogenicity (plant)	yes
[Ref.: #20529]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20529]	Dickeya solani strain NCPPB 4575 16S ribosomal RNA gene, partial sequence	KF639914	1401	ENA	1089444 tax ID

Availability in culture collections External links

[Ref.: #20529]

Culture collection no.

DSM 28711, LMG 25993, NCPPB 4479, IPO 2222

[Ref.: #87919]

SI-ID 370474

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Pathogenicity	Genome-Wide Identification of Dickeya solani Transcriptional Units Up-Regulated in Response to Plant Tissues From a Crop-Host Solanum tuberosum and a Weed-Host Solanum dulcamara.	Czajkowski R, Fikowicz-Krosko J, Maciag T, Rabalski L, Czaplewska P, Jafra S, Richert M, Krychowiak-Masnicka M, Hugouvieux-Cotte-Pattat N	Front Plant Sci	10.3389/fpls.2020.580330	2020	*
Phylogeny	The uniform structure of O-polysaccharides isolated from Dickeya solani strains of different origin.	Ossowska K, Czerwicka M, Sledz W, Zoledowska S, Motyka A, Golanowska M, Condemine G, Lojkowska E, Kaczynski Z	Carbohydr Res	10.1016/j.carres.2017.04.001	2017	*
Phylogeny	Dickeya solani sp. nov., a pectinolytic plant-pathogenic bacterium isolated from potato (Solanum tuberosum).	van der Wolf JM, Nijhuis EH, Kowalewska MJ, Saddler GS, Parkinson N, Elphinstone JG, Pritchard L, Toth IK, Lojkowska E, Potrykus M, Waleron M, de Vos P, Cleenwerck I, Pirhonen M, Garlant L, Helias V, Pothier JF, Pfluger V, Duffy B, Tsror L, Manulis S	Int J Syst Evol Microbiol	10.1099/ijs.0.052944-0	2013	*
Genetics	Population genomics reveals additive and replacing horizontal gene transfers in the emerging pathogen Dickeya solani.	Khayi S, Blin P, Pedron J, Chong TM, Chan KG, Moumni M, Helias V, Van Gijsegem F, Faure D	BMC Genomics	10.1186/s12864-015-1997-z	2015	*
Phylogeny	Peribacillus castrilensis sp. nov.: A Plant-Growth-Promoting and Biocontrol Species Isolated From a River Otter in Castril, Granada, Southern Spain.	Rodriguez M, Reina JC, Sampedro I, Llamas I, Martinez-Checa F	Front Plant Sci	10.3389/fpls.2022.896728	2022	*
	Systemic Colonization and Expression of Disease Symptoms on Bittersweet Nightshade (Solanum dulcamara) Infected with a GFP-Tagged Dickeya solani IPO2222 (IPO2254).	Fikowicz-Krosko J, Czajkowski R	Plant Dis	10.1094/PDIS-08-17-1147-RE	2018	*
	Oxygen Availability Influences Expression of Dickeya solani Genes Associated With Virulence in Potato (Solanum tuberosum L.) and Chicory (Cichorium intybus L.).	Lisicka W, Fikowicz-Krosko J, Jafra S, Narajczyk M, Czaplewska P, Czajkowski R	Front Plant Sci	10.3389/fpls.2018.00374	2018	*
	Complete genome anatomy of the emerging potato pathogen Dickeya solani type strain IPO 2222(T).	Khayi S, Blin P, Chong TM, Chan KG, Faure D	Stand Genomic Sci	10.1186/s40793-016-0208-0	2016	*
	Resistance of Dickeya solani strain IPO 2222 to lytic bacteriophage PhiD5 results in fitness tradeoffs for the bacterium during infection.	Bartnik P, Lewtak K, Fiolka M, Czaplewska P, Narajczyk M, Czajkowski R	Sci Rep	10.1038/s41598-022-14956-7	2022	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20529

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 28711

#68368

Automatically annotated from API 20E .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#87919

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID370474.1 )

* These data were automatically processed and therefore are not curated

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