[Ref.: #4316] |
Sample type/isolated from |
cloacal swab of herring gulls |
[Ref.: #4316] |
Country |
United Kingdom |
[Ref.: #4316] |
Country ISO 3 Code |
GBR |
[Ref.: #4316] |
Continent |
Europe |
|
[Ref.: #67770] |
Sample type/isolated from |
Cloacal swab of herring gull (Larus argentatus) |
[Ref.: #67770] |
Host species |
Larus argentatus |
|
[Ref.: #120560] |
Sample type/isolated from |
Animal, Herring, gull cloacal swab |
[Ref.: #120560] |
Isolation date |
1977 |
* marker position based on {}
|
|
Isolation sources categories |
#Infection |
#Patient |
#Swab |
#Host |
#Birds |
- |
#Host Body-Site |
#Gastrointestinal tract |
- |
#Host Body-Site |
#Urogenital tract |
- |
|
|
-
Information on genomic background e.g. entries in nucleic sequence databass Sequence information
|
16S Sequence information: |
Only first 5 entries are displayed. Click here to see all.Click here to see only first 5 entries. |
|
|
Sequence accession description |
Seq. accession number |
Sequence length (bp) |
Sequence database |
Associated NCBI tax ID |
|
[Ref.: #4316] |
Campylobacter lari subsp. lari strain ATCC 35221 16S ribosomal RNA gene, partial sequence |
AY621114 |
1441 |
|
650054 tax ID |
[Ref.: #20218] |
Campylobacter lari gene for 16S ribosomal RNA, strain:JCM2530 |
AB181368 |
1435 |
|
201 tax ID |
* |
[Ref.: #20218] |
Campylobacter lari subsp. lari strain CCUG 23947 16S ribosomal RNA, complete sequence |
L04316 |
1459 |
|
650054 tax ID |
* |
[Ref.: #20218] |
Campylobacter lari strain DSM 11375 16S ribosomal RNA gene, partial sequence |
HM007571 |
1338 |
|
201 tax ID |
* |
[Ref.: #20218] |
Campylobacter lari subsp. lari strain ATCC 35221 16S ribosomal RNA gene, partial sequence |
JX912522 |
1435 |
|
650054 tax ID |
* |
[Ref.: #20218] |
Campylobacter lari subsp. lari strain NCTC 11352 16S ribosomal RNA (rrs) gene, partial sequence |
DQ174145 |
1341 |
|
650054 tax ID |
* |
[Ref.: #20218] |
Campylobacter lari genes for 16S rRNA, tRNA-Ala, tRNA-Ile, 23S rRNA, partial and complete sequence, strain: JCM 2530 |
AB573229 |
946 |
|
201 tax ID |
* |
[Ref.: #20218] |
Campylobacter laridis (VC187) 16S ribosomal RNA, 3' segment |
M92310 |
359 |
|
201 tax ID |
* |
[Ref.: #20218] |
Campylobacter lari DNA, 16S rRNA, 16S-23S ribosomal RNA intergenic spacer, 23S rRNA, complete and partial sequence, strain: JCM 2530 |
AB644222 |
730 |
|
201 tax ID |
* |
|
[Ref.: #4316] |
GC-content |
32.5 mol% |
thermal denaturation, midpoint method (Tm) |
|
-
Availability in culture collections External links
[Ref.: #4316] |
Culture collection no. |
DSM 11375, ATCC 35221, CCUG 10773, CCUG 23947, CIP 102722, JCM 2530, LMG 8846, NCTC 11352, WRI 3034/77, JCM 14870, CCM 4897, LMG 7605, WDCM 00204 |
[Ref.: #71759] |
SI-ID 1533
|
* |
|
Literature: |
Only first 10 entries are displayed. Click here to see all.Click here to see only first 10 entries. |
|
Topic |
Title |
Authors |
Journal |
DOI |
Year |
|
Pathogenicity |
Molecular structural analysis of major outer membrane protein (MOMP) gene clusters in Campylobacter lari. |
Nakajima T, Ara W, Saito K, Moores JE, Millar BC, Matsuda M |
Br J Biomed Sci |
10.1080/09674845.2014.11669958 |
2014 |
* |
Phylogeny |
Molecular analysis of the 16S-23S rDNA internal spacer region (ISR) and truncated tRNA(Ala) gene segments in Campylobacter lari. |
Hayashi K, Tazumi A, Nakanishi S, Nakajima T, Matsubara K, Ueno H, Moore JE, Millar BC, Matsuda M |
World J Microbiol Biotechnol |
10.1007/s11274-012-1049-7 |
2012 |
* |
Pathogenicity |
Comparative analysis of Campylobacter lari cytolethal distending toxin (CDT) effect on HeLa cells. |
Nakajima T, Hirayama J, Tazumi A, Hayashi K, Tasaki E, Asakura M, Yamasaki S, Moore JE, Millar BC, Matsuda M |
J Basic Microbiol |
10.1002/jobm.201100297 |
2012 |
* |
Pathogenicity |
Structural analysis and expression of the full-length cytochrome P450 gene operon in Campylobacter lari. |
Nakanishi S, Tazumi A, Aihara N, Sekizuka T, Amano K, Moore JE, Millar BC, Matsuda M |
Br J Biomed Sci |
10.1080/09674845.2010.11730310 |
2010 |
* |
Phylogeny |
Novel Campylobacter lari-like bacteria from humans and molluscs: description of Campylobacter peloridis sp. nov., Campylobacter lari subsp. concheus subsp. nov. and Campylobacter lari subsp. lari subsp. nov. |
Debruyne L, On SL, De Brandt E, Vandamme P |
Int J Syst Evol Microbiol |
10.1099/ijs.0.000851-0 |
2009 |
* |
Genetics |
Lipo-oligosaccharide of the Campylobacter lari type strain ATCC 35221. Structure of the liberated oligosaccharide and an associated extracellular polysaccharide. |
Aspinall GO, Monteiro MA, Pang H |
Carbohydr Res |
10.1016/0008-6215(95)00284-7 |
1995 |
* |
Enzymology |
Analysis of chromosome-sized DNA from the bacterial genome of thermophilic Campylobacter laridis by pulsed-field gel electrophoresis and physical mapping. |
Matsumoto K, Matsuda M, Kaneuchi C |
Microbios |
|
1992 |
* |
|
- References
-
#4316 |
Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ;
DSM 11375
|
-
-
-
#41802 |
; Curators of the CIP;
|
-
#65632 |
Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG;
CCUG 23947
|
-
-
#67770 |
Japan Collection of Microorganism (JCM) ; Curators of the JCM;
|
-
#68373 |
Automatically annotated from API CAM .
|
-
#68377 |
Automatically annotated from API NH .
|
-
#68380 |
Automatically annotated from API rID32A .
|
-
#68382 |
Automatically annotated from API zym .
|
-
-
-
#71759 |
Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.:
StrainInfo: A central database for resolving microbial strain identifiers
.
(
DOI 10.60712/SI-ID1533.1 )
|
-
#120560 |
Collection of Institut Pasteur ; Curators of the CIP;
CIP 102722
|
- * These data were automatically processed and therefore are not curated
Change proposal
Successfully sent
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