Name: Caldisericum exile AZM16c01
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17798

Type strain:

Species: Caldisericum exile

Strain Designation: AZM16c01

Culture col. no.: DSM 21853, NBRC 104410

Strain history: <- K. Mori, NBRC; AZM16c01 <- K. Mori {2007}

NCBI tax ID(s): 693075 (species)

SI-ID 407941

DSM 21853

Section

Caldisericum exile AZM16c01 is an anaerobe, thermophilic, Gram-negative bacterium that was isolated from hot spring.

Gram-negative
motile
anaerobe
thermophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Caldisericota*
	Class	*Caldisericia*
	Order	*Caldisericales*
	Family	*Caldisericaceae*
	Genus	*Caldisericum*
	Species	**Caldisericum exile**
	Full Scientific Name (LPSN)	Caldisericum exile Mori et al. 2009

Information on morphological and physiological properties Morphology

[Ref.: #29275]	Gram stain	negative

[Ref.: #29275]	Cell length	4.95 µm

[Ref.: #29275]	Cell width	0.3 µm

[Ref.: #29275]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #15992]

Culture medium

CALDISERICUM MEDIUM (DSMZ Medium 1211)

[Ref.: #15992]

Culture medium growth

[Ref.: #15992]

Culture medium link

Medium recipe at MediaDive

[Ref.: #15992]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #15992]	growth	65 °C
[Ref.: #29275]	growth	55-70 °C
[Ref.: #29275]	optimum	65 °C

[Ref.: #15992]	Temperature range	thermophilic
[Ref.: #29275]	Temperature range	thermophilic

	pH	Kind of pH		pH
[Ref.: #29275]			optimum	6.5
[Ref.: #29275]			growth	5.5-7.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #15992]	Oxygen tolerance	anaerobe
[Ref.: #29275]	Oxygen tolerance	anaerobe

[Ref.: #29275]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29275]		NaCl		growth	<1	%

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #15992]	Sample type/isolated from	hot spring
[Ref.: #15992]	Geographic location (country and/or sea, region)	Nagano
[Ref.: #15992]	Country	Japan
[Ref.: #15992]	Country ISO 3 Code	JPN
[Ref.: #15992]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Thermal spring
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JQ346734 (>99% sequence identity) for Caldisericum exile subclade from Microbeatlas

Aquatic Samples	367
Soil Samples	11
Animal Samples	74
Plant Samples	5
Total Samples	457

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #15992]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #15992]	Caldisericum exile AZM16c01 gene for 16S rRNA, partial sequence	AB428365	1481	ENA	511051 tax ID
[Ref.: #20218]	Caldisericum exile strain AZM16c01 16S ribosomal RNA gene, partial sequence	JQ346734	1426	ENA	693075 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Caldisericum exile AZM16c01	GCA_000284335	complete	GenBank	511051 tax ID	*
[Ref.: #66792]	Caldisericum exile AZM16c01	511051.3	complete	PATRIC	511051 tax ID	*
[Ref.: #66792]	Caldisericum exile AZM16c01, NBRC 104410	2513237181	complete	JGI IMG/M	511051 tax ID	*

[Ref.: #15992]	GC-content	34.6 mol%	high performance liquid chromatography (HPLC)
[Ref.: #29275]	GC-content	34.6 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Caldisericum exile AZM16c01 AZM16c01 NCBI: GCA_000284335.1
[Ref.: #69480]	motile	no	84.082	yes
[Ref.: #69480]	flagellated	no	98.784	no
[Ref.: #69480]	gram-positive	no	91.702	yes
[Ref.: #69480]	anaerobic	yes	99.195	yes
[Ref.: #69480]	aerobic	no	98.753	no
[Ref.: #69480]	halophile	no	86.714	yes
[Ref.: #69480]	spore-forming	no	96.3	yes
[Ref.: #69480]	glucose-util	yes	79.177	no
[Ref.: #69480]	thermophile	yes	99.598	no
[Ref.: #69480]	glucose-ferment	no	60.7	no

Availability in culture collections External links

[Ref.: #15992]

Culture collection no.

DSM 21853, NBRC 104410

[Ref.: #86790]

SI-ID 407941

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Caldisericum exile gen. nov., sp. nov., an anaerobic, thermophilic, filamentous bacterium of a novel bacterial phylum, Caldiserica phyl. nov., originally called the candidate phylum OP5, and description of Caldisericaceae fam. nov., Caldisericales ord. nov. and Caldisericia classis nov.	Mori K, Yamaguchi K, Sakiyama Y, Urabe T, Suzuki K	Int J Syst Evol Microbiol	10.1099/ijs.0.010033-0	2009	*

References

#15992

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21853

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#29275

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25692 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#86790

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID407941.1 )

#25692

IJSEM 2894 2009 ( DOI 10.1099/ijs.0.010033-0 , PubMed 19628600 )

* These data were automatically processed and therefore are not curated

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Caldisericum exile AZM16c01 AZM16c01

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