Name: Haloplasma contractile SSD-17B
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17673

Type strain:

Species: Haloplasma contractile

Strain Designation: SSD-17B

Culture col. no.: DSM 18853, JCM 14575

Strain history: A. Antunes SSD-17B.

NCBI tax ID(s): 471825 (species)

SI-ID 405889

DSM 18853

Section

Haloplasma contractile SSD-17B is an anaerobe, mesophilic bacterium that was isolated from anoxic hypersaline brine-sediment interface.

anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Mycoplasmatota*
	Class	*Mollicutes*
	Order	*Haloplasmatales*
	Family	*Haloplasmataceae*
	Genus	*Haloplasma*
	Species	**Haloplasma contractile**
	Full Scientific Name (LPSN)	Haloplasma contractile Antunes et al. 2008

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7744]

Culture medium

HALOPLASMA CONTRACTILE MEDIUM (DSMZ Medium 1231)

[Ref.: #7744]

Culture medium growth

[Ref.: #7744]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7744]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #7744]			growth	30-37 °C
[Ref.: #67770]			growth	30 °C

[Ref.: #7744]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #7744]

Oxygen tolerance

anaerobe

[Ref.: #67770]

Observation

quinones: MK-4

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7744]	Sample type/isolated from	anoxic hypersaline brine-sediment interface
[Ref.: #7744]	Geographic location (country and/or sea, region)	Red Sea, Shaban Deep
[Ref.: #7744]	Country	Saudi Arabia
[Ref.: #7744]	Country ISO 3 Code	SAU
[Ref.: #7744]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Hypersaline brine-sediment interface of the Shaban Deep
[Ref.: #67770]	Geographic location (country and/or sea, region)	Red Sea
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	-
#Environmental	#Aquatic	#Sediment
#Condition	#Anoxic (anaerobic)	-
#Condition	#Saline	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EF999972 (>99% sequence identity) for Haloplasma contractile subclade from Microbeatlas

Aquatic Samples	278
Soil Samples	130
Animal Samples	426
Plant Samples	47
Total Samples	881

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7744]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7744]	Haloplasma contractile strain SSD-17B 16S ribosomal RNA gene, partial sequence	EF999972	1345	ENA	1033810 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Haloplasma contractile SSD-17B	GCA_000215935	contig	GenBank	1033810 tax ID
[Ref.: #66792]	Haloplasma contractile SSD-17B	1033810.11	wgs	PATRIC	1033810 tax ID	*
[Ref.: #66792]	Haloplasma contractile SSD-17B	2562617192	draft	JGI IMG/M	1033810 tax ID	*

[Ref.: #7744]

GC-content

33.6 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Haloplasma contractile SSD-17B PATRIC: 1033810.11
[Ref.: #69480]	motile	no	86.797	no
[Ref.: #69480]	flagellated	no	93.448	no
[Ref.: #69480]	gram-positive	yes	89.036	no
[Ref.: #69480]	anaerobic	yes	93.913	yes
[Ref.: #69480]	aerobic	no	92.876	yes
[Ref.: #69480]	halophile	no	62.388	no
[Ref.: #69480]	spore-forming	no	55.221	no
[Ref.: #69480]	thermophile	no	97.81	yes
[Ref.: #69480]	glucose-util	yes	88.197	no
[Ref.: #69480]	glucose-ferment	no	52.254	no

Availability in culture collections External links

[Ref.: #7744]

Culture collection no.

DSM 18853, JCM 14575

[Ref.: #86664]

SI-ID 405889

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	A new lineage of halophilic, wall-less, contractile bacteria from a brine-filled deep of the Red Sea.	Antunes A, Rainey FA, Wanner G, Taborda M, Patzold J, Nobre MF, da Costa MS, Huber R	J Bacteriol	10.1128/JB.01860-07	2008	*

References

#7744

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18853

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#86664

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID405889.1 )

* These data were automatically processed and therefore are not curated

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