Name: Xylella fastidiosa 2683 PCE-RR
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17622

Type strain:

Species: Xylella fastidiosa

Strain Designation: 2683 PCE-RR

Culture col. no.: DSM 10026, ATCC 35879, CFBP 7970, LMG 17159

Strain history: <- ATCC <- J. M. Wells; 2683 PCE-RR <- B. C. Raju

NCBI tax ID(s): 2371 (species)

SI-ID 10333

LMG 17159, ATCC 35879, DSM 10026, ICMP 11140, ICMP 15197, NCPPB 4432, CFBP 7970

Other strains from Xylella fastidiosa

X. fastidiosa Wells 2691, DSM 103369, ATCC 35869, ...
X. fastidiosa ALS-BC, DSM 103417, ATCC 35870, ...

Section

Xylella fastidiosa 2683 PCE-RR is a mesophilic plant pathogen that was isolated from grapevine.

mesophilic
plant pathogen
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Lysobacterales*
	Family	*Lysobacteraceae*
	Genus	*Xylella*
	Species	**Xylella fastidiosa**
	Full Scientific Name (LPSN)	Xylella fastidiosa Wells et al. 1987

Synonym

"Xylella fastidiosa subsp. piercei"

Information on morphological and physiological properties Morphology

[Ref.: #3785]

Incubation period

8-14 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #3785]

Culture medium

BOSEA MEDIUM (DSMZ Medium 1052)

[Ref.: #3785]

Culture medium growth

[Ref.: #3785]

Culture medium link

Medium recipe at MediaDive

[Ref.: #3785]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #3785]			growth	26 °C

[Ref.: #3785]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #3785]	Sample type/isolated from	grapevine
[Ref.: #3785]	Geographic location (country and/or sea, region)	Florida
[Ref.: #3785]	Country	USA
[Ref.: #3785]	Country ISO 3 Code	USA
[Ref.: #3785]	Continent	North America
* marker position based on {}

Isolation sources categories

#Engineered	#Food production	#Fermented
#Host Body-Site	#Plant	#Fruit (Seed)
#Engineered	#Food production	#Beverage

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AF203391 (>99% sequence identity) for Xylella fastidiosa from Microbeatlas

Aquatic Samples	1022
Soil Samples	540
Animal Samples	2029
Plant Samples	287
Total Samples	3878

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #3785]	Pathogenicity (plant)	yes
[Ref.: #3785]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #3785]	Xylella fastidiosa 16S ribosomal RNA, complete sequence	AF192343	1537	ENA	2371 tax ID
[Ref.: #20218]	Xylella fastidiosa 16S ribosomal RNA gene, partial sequence; tRNA-Ala and tRNA-Ile genes, complete sequence; and 23S ribosomal RNA gene, partial sequence	AF272834	942	ENA	2371 tax ID	*
[Ref.: #20218]	Xylella fastidiosa 16S ribosomal RNA gene, partial sequence	DQ987477	1537	ENA	2371 tax ID	*
[Ref.: #20218]	Xylella fastidiosa strain ATCC 35879 16S-23S ribosomal RNA intergenic spacer, complete sequence	DQ991169	512	ENA	2371 tax ID	*
[Ref.: #20218]	Xylella fastidiosa strain GR.8935 16S ribosomal RNA gene, partial sequence	AF203391	1534	ENA	2371 tax ID	*
[Ref.: #20218]	Xylella fastidiosa strain GR.8935 16S-23S ribosomal RNA intergenic spacer, complete sequence	AF203397	512	ENA	2371 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Xylella fastidiosa ATCC 35879	2645728018	draft	JGI IMG/M	2371 tax ID	*
[Ref.: #66792]	Xylella fastidiosa ATCC 35879	GCA_000767565	contig	GenBank	2371 tax ID	*
[Ref.: #66792]	Xylella fastidiosa DSM 10026	GCA_900129695	scaffold	GenBank	2371 tax ID	*
[Ref.: #66792]	Xylella fastidiosa subsp. fastidiosa CFBP7970	GCA_004016315	contig	GenBank	644356 tax ID	*
[Ref.: #66792]	Xylella fastidiosa ATCC 35879	2371.35	wgs	PATRIC	2371 tax ID	*
[Ref.: #66792]	Xylella fastidiosa strain ATCC 35879	2371.472	complete	PATRIC	2371 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Xylella fastidiosa ATCC 35879 NCBI: GCA_011801475.1
[Ref.: #69480]	motile	no	81.402	no
[Ref.: #69480]	flagellated	no	97.089	no
[Ref.: #69480]	gram-positive	no	98.521	no
[Ref.: #69480]	anaerobic	no	97.363	no
[Ref.: #69480]	aerobic	no	59.502	no
[Ref.: #69480]	halophile	no	91.706	no
[Ref.: #69480]	spore-forming	no	96.493	no
[Ref.: #69480]	glucose-util	yes	81.639	no
[Ref.: #69480]	thermophile	no	92.278	no
[Ref.: #69480]	glucose-ferment	no	80.55	no

Availability in culture collections External links

[Ref.: #3785]

Culture collection no.

DSM 10026, ATCC 35879, CFBP 7970, LMG 17159

[Ref.: #86614]

SI-ID 10333

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Whole Genome Sequence of Xylella fastidiosa ATCC 35879(T) and Detection of Genome Rearrangements Within Subsp. fastidiosa.	Chen J, O'Leary M, Burbank L, Zheng Z, Deng X	Curr Microbiol	10.1007/s00284-020-01937-0	2020	*
Phylogeny	Evidence for conserved tRNA genes in the 16S-23S rDNA spacer sequence and two rrn operons of Xylella fastidiosa.	Chen J, Banks D, Jarret RL, Jones JB	Can J Microbiol	10.1139/w00-114	2000	*

References

#3785

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 10026

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#86614

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID10333.1 )

* These data were automatically processed and therefore are not curated

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Xylella fastidiosa ATCC 35879

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