Name: Xanthomonas hyacinthi DSM 19077
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17589

Type strain:

Species: Xanthomonas hyacinthi

Culture col. no.: DSM 19077, ATCC 19314, ICMP 189, LMG 739, NCPPB 599, IPO 392

Strain history: <- NCPPB <- E. van Slogteren

NCBI tax ID(s): 1440765 (strain), 56455 (species)

SI-ID 5617

LMG 739, ATCC 19314, ICMP 189, LMG 16016, NCPPB 599, PDDCC 189, ATCC 193314, CFBP 1156, DSM 19077

Other strains from Xanthomonas hyacinthi

X. hyacinthi DSM 50855, ICPB XH 110
X. hyacinthi CCUG 1830, CCM 1896

Section

Xanthomonas hyacinthi DSM 19077 is a mesophilic plant pathogen that was isolated from Hyacinthus orientalis.

mesophilic
plant pathogen
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Lysobacterales*
	Family	*Lysobacteraceae*
	Genus	*Xanthomonas*
	Species	**Xanthomonas hyacinthi**
	Full Scientific Name (LPSN)	Xanthomonas hyacinthi (ex Wakker 1883) Vauterin et al. 1995

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7869]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #7869]

Culture medium growth

[Ref.: #7869]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7869]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #7869]			growth	30 °C

[Ref.: #7869]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7869]	Sample type/isolated from	Hyacinthus orientalis
[Ref.: #7869]	Country	Netherlands
[Ref.: #7869]	Country ISO 3 Code	NLD
[Ref.: #7869]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host

#Plants

#Herbaceous plants (Grass,Crops)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence Y10754 (>99% sequence identity) for Xanthomonas from Microbeatlas

Aquatic Samples	3769
Soil Samples	5101
Animal Samples	5827
Plant Samples	5320
Total Samples	20017

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7869]	Pathogenicity (plant)	yes
[Ref.: #7869]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7869]	X.hyacinthi 16S rRNA gene	Y10754	1500	ENA	56455 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Xanthomonas hyacinthi DSM 19077	GCA_001010435	contig	GenBank	1440765 tax ID	*
[Ref.: #66792]	Xanthomonas hyacinthi DSM 19077	1440765.4	wgs	PATRIC	1440765 tax ID	*
[Ref.: #66792]	Xanthomonas hyacinthi DSM 19077	2651869672	draft	JGI IMG/M	1440765 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Xanthomonas hyacinthi DSM 19077 PATRIC: 1440765.4
[Ref.: #69480]	motile	yes	85.509	no
[Ref.: #69480]	gram-positive	no	98.047	no
[Ref.: #69480]	anaerobic	no	98.892	no
[Ref.: #69480]	halophile	no	94.416	no
[Ref.: #69480]	spore-forming	no	94.45	no
[Ref.: #69480]	thermophile	no	99.659	yes
[Ref.: #69480]	glucose-util	yes	94.079	no
[Ref.: #69480]	aerobic	yes	90.629	no
[Ref.: #69480]	flagellated	no	82.471	no
[Ref.: #69480]	glucose-ferment	no	84.978	no

Availability in culture collections External links

[Ref.: #7869]

Culture collection no.

DSM 19077, ATCC 19314, ICMP 189, LMG 739, NCPPB 599, IPO 392

[Ref.: #86584]

SI-ID 5617

References

#7869

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19077

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#86584

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID5617.1 )

* These data were automatically processed and therefore are not curated

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