Name: Vibrio coralliilyticus DSM 19607
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17336

Type strain:

Species: Vibrio coralliilyticus

Culture col. no.: DSM 19607, ATCC BAA-450, CAIM 616, CCUG 48437, LMG 20984

Strain history: <- CCUG <- LMG <- E. Rosenberg, Tel Aviv Univ.; YB1

NCBI tax ID(s): 675814 (strain), 190893 (species)

SI-ID 85102

LMG 20984, ATCC BAA-450, CCUG 48437, DSM 19607

Other strains from Vibrio coralliilyticus

V. coralliilyticus YB, CIP 107925 (type strain)

Section

Vibrio coralliilyticus DSM 19607 is a mesophilic animal pathogen that was isolated from diseased coral .

animal pathogen
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	"Vibrionales"
	Family	*Vibrionaceae*
	Genus	*Vibrio*
	Species	**Vibrio coralliilyticus**
	Full Scientific Name (LPSN)	Vibrio coralliilyticus Ben-Haim et al. 2003

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8124]

Culture medium

REACTIVATION WITH LIQUID MEDIUM 514 (DSMZ Medium 514c)

[Ref.: #8124]

Culture medium growth

[Ref.: #8124]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8124]

Culture medium composition

expand / minimize

[Ref.: #8124]

Culture medium

SEA WATER AGAR (DSMZ Medium 246)

[Ref.: #8124]

Culture medium growth

[Ref.: #8124]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #8124]

Culture medium

MARINE BROTH (ROTH CP73) (DSMZ Medium 514f)

[Ref.: #8124]

Culture medium growth

[Ref.: #8124]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #34296]

Culture medium

Marine agar (MA)

[Ref.: #34296]

Culture medium growth

[Ref.: #34296]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #8124]			growth	28 °C
[Ref.: #34296]			growth	25 °C

[Ref.: #8124]	Temperature range	mesophilic
[Ref.: #34296]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68368]	amygdalin ChEBI	-	fermentation	* from API 20E
[Ref.: #68374]	arginine ChEBI	-	hydrolysis	* from API ID32E
[Ref.: #68374]	cellobiose ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68368]	citrate ChEBI	-	assimilation	* from API 20E
[Ref.: #68374]	D-arabitol ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68374]	D-galacturonic acid ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68374]	D-glucose ChEBI	+	builds acid from	* from API ID32E
[Ref.: #68369]	D-glucose ChEBI	+	fermentation	* from API 20NE, API 20E
[Ref.: #68374]	D-mannitol ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68369]	gelatin ChEBI	+	hydrolysis	* from API 20NE, API 20E
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68374]	L-arabinose ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68368]	L-arabinose ChEBI	-	fermentation	* from API 20E
[Ref.: #68374]	L-arabitol ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68374]	L-rhamnose ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68368]	L-rhamnose ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	lysine ChEBI	-	degradation	* from API 20E, API ID32E
[Ref.: #68374]	malonate ChEBI	-	assimilation	* from API ID32E
[Ref.: #68374]	maltose ChEBI	+	builds acid from	* from API ID32E
[Ref.: #68368]	melibiose ChEBI	-	fermentation	* from API 20E
[Ref.: #68374]	myo-inositol ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68368]	myo-inositol ChEBI	-	fermentation	* from API 20E
[Ref.: #68369]	nitrate ChEBI	+	reduction	* from API 20NE
[Ref.: #68368]	ornithine ChEBI	-	degradation	* from API 20E, API ID32E
[Ref.: #68374]	palatinose ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68374]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68374]	ribitol ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68374]	sorbitol ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68368]	sorbitol ChEBI	-	fermentation	* from API 20E
[Ref.: #68374]	sucrose ChEBI	+	builds acid from	* from API ID32E
[Ref.: #68368]	sucrose ChEBI	+	fermentation	* from API 20E
[Ref.: #68374]	trehalose ChEBI	+	builds acid from	* from API ID32E
[Ref.: #68374]	tryptophan ChEBI	+	energy source	* from API ID32E
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE, API 20E, API ID32E
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68368]		hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68374]		indole ChEBI	yes	* from API ID32E

	Physiological tests	Metabolite	Indole test
[Ref.: #68374]		indole ChEBI	+	* from API ID32E

	Enzyme	Enzyme activity	EC number
[Ref.: #68374]	alpha-galactosidase	-	3.2.1.22	* from API ID32E
[Ref.: #68374]	alpha-glucosidase	-	3.2.1.20	* from API ID32E
[Ref.: #68374]	alpha-maltosidase	-		* from API ID32E
[Ref.: #68374]	arginine dihydrolase	-	3.5.3.6	* from API ID32E
[Ref.: #68374]	beta-galactosidase	+	3.2.1.23	* from API ID32E, API 20E
[Ref.: #68374]	beta-glucosidase	-	3.2.1.21	* from API ID32E
[Ref.: #68374]	beta-glucuronidase	-	3.2.1.31	* from API ID32E
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE, API 20E
[Ref.: #68369]	gelatinase	+		* from API 20NE, API 20E
[Ref.: #68374]	L-aspartate arylamidase	-	3.4.11.21	* from API ID32E
[Ref.: #68374]	lipase	-		* from API ID32E
[Ref.: #68374]	lysine decarboxylase	-	4.1.1.18	* from API ID32E, API 20E
[Ref.: #68374]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API ID32E
[Ref.: #68374]	ornithine decarboxylase	-	4.1.1.17	* from API ID32E, API 20E
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68374]	urease	-	3.5.1.5	* from API ID32E, API 20NE, API 20E
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #58159]

Fatty acid	Percentage	ECL
C16:1 ω7c	31.1	15.819
C18:1 ω7c /12t/9t	25.4	17.824
C16:0	13.5	16
C16:1 ω7c/C15:0 ISO 2OH	6.3	15.85
C14:0	5	14
C12:0	2.6	12
C14:0 3OH/C16:1 ISO I	2.5	15.485
C12:0 3OH	2.1	13.455
C17:0 iso	1.8	16.629
C13:0 iso	1.5	12.612
C17:1 ω8c	1.3	16.792
C17:0	1.2	17
11 methyl 18:1 ω7c	0.8	18.081
Unidentified	0.8	15.272
C15:0	0.8	15
C15:0 ISO 3OH	0.6	16.135
C19:0 10-methyl	0.5	19.368
C15:0 ISO	0.5	14.621
C16:1 ω9c	0.4	15.774
C18:1 ω9c	0.4	17.769
C13:0 ISO 3OH	0.4	14.11
C18:0	0.4	18
unknown 12.486	0.4	12.486

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #8124]	17756	+	+	-	-	-	-	-	-	+	+	+	+	+	-	-	-	+	-	-	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
[Ref.: #58159]	6237	+	-	-	-	-	-	-	-	-	-	+	+	-	-	-	-	+	-	-	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #8124]	25312	+	-	+	-	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	+
[Ref.: #8124]	23503	+	+	+	+	-	+	+	+	+	-	+	-	-	+	+	-	-	+	-	-	+
[Ref.: #8124]	23469	+	+	+	-	-	-	+	+	+	-	+	+	+	+	+	+	-	+	+	-	+

API® ID32E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Ornithine decarboxylaseODC	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Urease/urea hydrolysisURE	Acid from L-arabitolLARL	Acid from D-galacturonic acidGAT	Acid from 5-Ketogluconate5KG	LipaseLIP	Phenol red (Acidification)RP	beta-Glucosidasebeta GLU	Acid from D-mannitolMAN	Acid from maltoseMAL	Acid from D-adonitolADO	Acid from palatinosePLE	beta-Glucuronidasebeta GUR	MalonateMNT	Indole productionIND	N-Acetyl-beta-Glucosaminidasebeta NAG	beta-Galactosidasebeta GAL	Acid from D-glucoseGLU	Acid from sucroseSAC	Acid from L-arabinoseLARA	Acid from D-arabitolDARL	alpha-Glucosidasealpha GLU	alpha-Galactosidasealpha GAL	Acid from trehaloseTRE	Acid from L-rhamnoseRHA	Acid from inositolINO	Acid from cellobioseCEL	Acid from sorbitolSOR	alpha-MaltosidasealphaMAL	L-aspartic acid arylamidaseAspA
[Ref.: #58159]	1735	-	-	-	-	-	-	-	-	+	-	-	+	-	-	-	-	+	-	+	+	+	-	-	-	-	+	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8124]	Sample type/isolated from	diseased coral (Pocillopora damicornis)
[Ref.: #8124]	Host species	Pocillopora damicornis
[Ref.: #8124]	Geographic location (country and/or sea, region)	Indian Ocean near Zanzibar

[Ref.: #58159]	Sample type/isolated from	Diseased coral (Pocillopora damicornis)
[Ref.: #58159]	Sampling date	1999
[Ref.: #58159]	Geographic location (country and/or sea, region)	Indian Ocean near Zanzibar
[Ref.: #58159]	Country	Indian Ocean
* marker position based on {}

Isolation sources categories

#Host

#Invertebrates (Other)

#Cnidaria (Corals)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ440005 (>99% sequence identity) for Vibrio from Microbeatlas

Aquatic Samples	3721
Soil Samples	27
Animal Samples	50
Plant Samples	3
Total Samples	3801

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8124]	Pathogenicity (animal)	yes
[Ref.: #8124]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #8124]	Vibrio corallilyticus partial 16S rRNA gene, type strain LMG 20984	AJ440005	1465	ENA	675814 tax ID
[Ref.: #20218]	Vibrio coralliilyticus ATCC BAA-450 strain LMG 20984 16S ribosomal RNA gene, partial sequence	JN039154	1465	ENA	675814 tax ID	*

Availability in culture collections External links

[Ref.: #8124]

Culture collection no.

DSM 19607, ATCC BAA-450, CAIM 616, CCUG 48437, LMG 20984

[Ref.: #86336]

SI-ID 85102

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Characterization of the self-cleaving effector protein NopE1 of Bradyrhizobium japonicum.	Schirrmeister J, Friedrich L, Wenzel M, Hoppe M, Wolf C, Gottfert M, Zehner S	J Bacteriol	10.1128/JB.00437-11	2011	*
Biotechnology	Chitin stimulates production of the antibiotic andrimid in a Vibrio coralliilyticus strain.	Wietz M, Mansson M, Gram L	Environ Microbiol Rep	10.1111/j.1758-2229.2011.00259.x	2011	*
Phylogeny	Vibrio variabilis sp. nov. and Vibrio maritimus sp. nov., isolated from Palythoa caribaeorum.	Chimetto LA, Cleenwerck I, Moreira APB, Brocchi M, Willems A, De Vos P, Thompson FL	Int J Syst Evol Microbiol	10.1099/ijs.0.026997-0	2011	*
Phylogeny	Usefulness of a real-time PCR platform for G+C content and DNA-DNA hybridization estimations in vibrios.	Moreira APB, Pereira N, Thompson FL	Int J Syst Evol Microbiol	10.1099/ijs.0.023606-0	2010	*
Phylogeny	Phylogeny of the coral pathogen Vibrio coralliilyticus.	Pollock FJ, Wilson B, Johnson WR, Morris PJ, Willis BL, Bourne DG	Environ Microbiol Rep	10.1111/j.1758-2229.2009.00131.x	2010	*
Phylogeny	Vibrio coralliilyticus sp. nov., a temperature-dependent pathogen of the coral Pocillopora damicornis.	Ben-Haim Y, Thompson FL, Thompson CC, Cnockaert MC, Hoste B, Swings J, Rosenberg E	Int J Syst Evol Microbiol	10.1099/ijs.0.02402-0	2003	*

References

#8124

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19607

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#34296 ; Curators of the CIP;
#58159 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 48437

#68368

Automatically annotated from API 20E .

#68369

Automatically annotated from API 20NE .

#68374

Automatically annotated from API ID32E .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#86336

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID85102.1 )

* These data were automatically processed and therefore are not curated

Change proposal

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