[Ref.: #15835] |
Sample type/isolated from |
Ulcerated cod (Gadus morhua) |
[Ref.: #15835] |
Host species |
Gadus morhua |
[Ref.: #15835] |
Geographic location (country and/or sea, region) |
Norwegian fjords |
[Ref.: #15835] |
Country |
Norway |
[Ref.: #15835] |
Country ISO 3 Code |
NOR |
[Ref.: #15835] |
Continent |
Europe |
|
[Ref.: #57610] |
Sample type/isolated from |
Fish,ulcerous lesion in cod |
|
[Ref.: #116386] |
Sample type/isolated from |
Animal, Ulcerated cod, Gadus morhua |
[Ref.: #116386] |
Geographic location (country and/or sea, region) |
Norwegian fjords |
[Ref.: #116386] |
Country |
Norway |
[Ref.: #116386] |
Country ISO 3 Code |
NOR |
[Ref.: #116386] |
Continent |
Europe |
* marker position based on {}
|
|
Isolation sources categories |
#Infection |
#Inflammation |
- |
#Host |
#Fishes |
- |
|
|
-
Information on genomic background e.g. entries in nucleic sequence databass Sequence information
|
16S Sequence information: |
Only first 5 entries are displayed. Click here to see all.Click here to see only first 5 entries. |
|
|
Sequence accession description |
Seq. accession number |
Sequence length (bp) |
Sequence database |
Associated NCBI tax ID |
|
[Ref.: #15835] |
Listonella anguillarum partial 16S rRNA gene, strain NCMB 6 |
AM235737 |
1455 |
|
55601 tax ID |
[Ref.: #15835] |
Vibrio anguillarum partial 16S rRNA gene, type strain ATCC 19264T |
X16895 |
1505 |
|
55601 tax ID |
[Ref.: #20218] |
Listonella anguillarum strain ATCC 19264 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequence |
EU570970 |
598 |
|
55601 tax ID |
* |
[Ref.: #20218] |
Listonella anguillarum strain ATCC 19264 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer and tRNA-Glu gene, complete sequence; and 23S ribosomal RNA gene, partial sequence |
EU570971 |
510 |
|
55601 tax ID |
* |
[Ref.: #20218] |
Listonella anguillarum 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer region, tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequence |
AY227665 |
598 |
|
55601 tax ID |
* |
[Ref.: #20218] |
Vibrio anguillarum strain CECT522 16S ribosomal RNA gene, partial sequence |
EU851049 |
500 |
|
55601 tax ID |
* |
[Ref.: #20218] |
Listonella anguillarum gene for 16S rRNA, partial sequence, strain: NBRC 13266 |
AB680389 |
1470 |
|
55601 tax ID |
* |
[Ref.: #20218] |
Listonella anguillarum strain ATCC 19264 16S-23S ribosomal RNA intergenic spacer, partial sequence; and tRNA-Glu, tRNA-Lys, and tRNA-Val genes, complete sequence |
FJ666331 |
724 |
|
55601 tax ID |
* |
[Ref.: #20218] |
Listonella anguillarum strain ATCC 19264 16S-23S ribosomal RNA intergenic spacer, partial sequence; and tRNA-Glu, tRNA-Lys, tRNA-Ala, and tRNA-Val genes, complete sequence |
FJ666332 |
821 |
|
55601 tax ID |
* |
[Ref.: #20218] |
Vibrio anguilarum ATCC 19264 (strain 507, serotype 02) 16S ribosomal RNA (16S rRNA) |
M28385 |
99 |
|
105260 tax ID |
* |
|
|
Genome sequence information: |
|
|
Sequence accession description |
Seq. accession number |
Assembly level |
Sequence database |
Associated NCBI tax ID |
|
[Ref.: #67770] |
Vibrio anguillarum NCTC12159 |
GCA_900452855 |
contig |
|
55601 tax ID |
[Ref.: #66792] |
Vibrio anguillarum DSM 21597 |
GCA_001989995 |
contig |
|
55601 tax ID |
* |
[Ref.: #66792] |
Vibrio anguillarum strain DSM 21597 |
55601.109 |
complete |
|
55601 tax ID |
* |
[Ref.: #66792] |
Vibrio anguillarum strain NCTC12159 |
55601.211 |
wgs |
|
55601 tax ID |
* |
[Ref.: #66792] |
Vibrio anguillarum NCTC 12159 |
2916734906 |
draft |
|
55601 tax ID |
* |
|
|
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Availability in culture collections External links
[Ref.: #15835] |
Culture collection no. |
DSM 21597, ATCC 19264, CAIM 696, CCTM 2283, CCUG 47265, CECT 522, CIP 63.36, IFO 13266, LMG 4410, LMG 4437, NBRC 13266, NCCB 72050, NCIMB 6, NCTC 12159, RIMD 2202001, JCM 33359 |
[Ref.: #86279] |
SI-ID 3535
|
* |
|
Literature: |
|
Topic |
Title |
Authors |
Journal |
DOI |
Year |
|
Phylogeny |
The genus Listonella MacDonell and Colwell 1986 is a later heterotypic synonym of the genus Vibrio Pacini 1854 (Approved Lists 1980)--a taxonomic opinion. |
Thompson FL, Thompson CC, Dias GM, Naka H, Dubay C, Crosa JH |
Int J Syst Evol Microbiol |
10.1099/ijs.0.030015-0 |
2011 |
* |
Metabolism |
Effects of vibrio challenge on digestive gland biomarkers and antioxidant gene expression in Mytilus galloprovincialis. |
Canesi L, Barmo C, Fabbri R, Ciacci C, Vergani L, Roch P, Gallo G |
Comp Biochem Physiol C Toxicol Pharmacol |
10.1016/j.cbpc.2010.06.008 |
2010 |
* |
Metabolism |
Specificity of anti-Vibrio immune response through p38 MAPK and PKC activation in the hemocytes of the mussel Mytilus galloprovincialis. |
Ciacci C, Betti M, Canonico B, Citterio B, Roch P, Canesi L |
J Invertebr Pathol |
10.1016/j.jip.2010.05.010 |
2010 |
* |
|
A microbiological assay for determining sarafloxacin and oxolinic acid concentrations in Atlantic salmon plasma. |
Giles JS, Hariharan H, Heaney SB |
New Microbiol |
|
1994 |
* |
|
- References
-
#15835 |
Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ;
DSM 21597
|
-
-
-
#37701 |
; Curators of the CIP;
|
-
#57610 |
Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG;
CCUG 47265
|
-
-
#67770 |
Japan Collection of Microorganism (JCM) ; Curators of the JCM;
|
-
#68368 |
Automatically annotated from API 20E .
|
-
#68371 |
Automatically annotated from API 50CH acid .
|
-
#68382 |
Automatically annotated from API zym .
|
-
#69479 |
João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.:
MicrobeAtlas 1.0 beta
.
|
-
-
#86279 |
Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.:
StrainInfo: A central database for resolving microbial strain identifiers
.
(
DOI 10.60712/SI-ID3535.1 )
|
-
#116386 |
Collection of Institut Pasteur ; Curators of the CIP;
CIP 63.36
|
- * These data were automatically processed and therefore are not curated
Change proposal
Successfully sent
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