Name: Photobacterium damselae subsp. piscicida K-1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17229

Type strain:

Species: Photobacterium damselae subsp. piscicida

Strain Designation: K-1

Culture col. no.: DSM 22834, ATCC 51736, CIP 104404, KCTC 12268, LMG 21869, NCIMB 2058, CCUG 35502

Strain history: CIP <- 1995, NCIMB <- R. Kusuda: strain K-1, Pasteurella piscicida

NCBI tax ID(s): 38294 (subspecies)

SI-ID 43150

ATCC 51736, CCUG 35502, NCIMB 2058, CIP 104404, LMG21869, BCRC 17065, CCRC 17065, KCTC12268, DSM 22834

Other strains from Photobacterium damselae subsp. piscicida

P. damselae subsp. piscicida 315, CIP 103910, ATCC 17911

Section

Photobacterium damselae subsp. piscicida K-1 is a facultative anaerobe, mesophilic, Gram-negative animal pathogen that was isolated from yellowtail with pseudotuberculosis.

Gram-negative
rod-shaped
animal pathogen
facultative anaerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	"Vibrionales"
	Family	*Vibrionaceae*
	Genus	*Photobacterium*
	Species	**Photobacterium damselae subsp. piscicida**
	Full Scientific Name (LPSN)	Photobacterium damselae subsp. piscicida corrig. (ex Janssen and Surgalla 1968) Gauthier et al. 1995

Synonym

Photobacterium damsela subsp. piscicida

Information on morphological and physiological properties Morphology

[Ref.: #118853]	Gram stain	negative

[Ref.: #118853]	Cell shape	rod-shaped

[Ref.: #118853]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16539]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #16539]

Culture medium growth

[Ref.: #16539]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16539]

Culture medium composition

expand / minimize

[Ref.: #16539]

Culture medium

BHI MEDIUM (DSMZ Medium 215)

[Ref.: #16539]

Culture medium growth

[Ref.: #16539]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16539]

Culture medium composition

expand / minimize

[Ref.: #35165]

Culture medium

Marine agar (MA)

[Ref.: #35165]

Culture medium growth

[Ref.: #35165]

Culture medium composition

expand / minimize

[Ref.: #118853]

Culture medium

CIP Medium 13

[Ref.: #118853]

Culture medium growth

[Ref.: #118853]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #16539]		growth	25 °C
[Ref.: #35165]		growth	25 °C
[Ref.: #52772]		growth	22 °C
[Ref.: #118853]		growth	10-30 °C
[Ref.: #118853]	no	growth	5 °C
[Ref.: #118853]	no	growth	41 °C

[Ref.: #16539]	Temperature range	mesophilic
[Ref.: #35165]	Temperature range	mesophilic
[Ref.: #52772]	Temperature range	psychrophilic
[Ref.: #118853]	Temperature range	psychrophilic
[Ref.: #118853]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #118853]

Oxygen tolerance

facultative anaerobe

	Salt	Tested relation		Salt conc.
[Ref.: #118853]	NaCl		growth	2-6	%
[Ref.: #118853]	NaCl	no	growth	0	%
[Ref.: #118853]	NaCl	no	growth	8	%
[Ref.: #118853]	NaCl	no	growth	10	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	+	fermentation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #118853]	nitrate ChEBI	-	reduction
[Ref.: #68369]	nitrate ChEBI	-	reduction	* from API 20NE
[Ref.: #118853]	nitrite ChEBI	-	reduction
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #118853]		indole ChEBI	no
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #118853]		acetoin ChEBI	-
[Ref.: #68369]		indole ChEBI		-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #118853]	alcohol dehydrogenase	+	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #118853]	amylase	-
[Ref.: #68369]	arginine dihydrolase	+	3.5.3.6	* from API 20NE
[Ref.: #118853]	beta-galactosidase	+/-	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #118853]	caseinase	-	3.4.21.50
[Ref.: #118853]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #118853]	gamma-glutamyltransferase	+	2.3.2.2
[Ref.: #118853]	gelatinase	-
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #118853]	lecithinase	+
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #118853]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #118853]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #118853]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #118853]	oxidase	+
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #118853]	urease	-	3.5.1.5
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #52772]

Fatty acid	Percentage	ECL
C16:1 ω7c	40.6	15.819
C16:0	20.2	16
C14:0	11	14
C12:0	6.5	12
C18:1 ω7c /12t/9t	5.6	17.824
C12:0 3OH	5.6	13.455
C14:0 3OH/C16:1 ISO I	5.4	15.485
C13:0 ISO 2OH	2.4	13.814
unknown 12.486	0.8	12.486
C15:0	0.5	15
C18:0	0.4	18
C16:1 ω5c	0.3	15.908
C12:0 ALDE ?	0.3	10.915
unknown 11.798	0.3	11.798
Unidentified	0.2	18.557

Metadata FA analysis

Reference

[Ref.: #52772]

Fatty acid	Percentage	ECL
C16:1 ω7c	38.5	15.819
C16:0	23.5	16
C14:0	8.6	14
C18:1 ω7c /12t/9t	7.9	17.824
C12:0 3OH	6.1	13.455
C14:0 3OH/C16:1 ISO I	5.8	15.485
C12:0	5.6	12
C13:0 ISO 2OH	1.4	13.814
unknown 12.486	0.7	12.486
C16:1 ω9c	0.5	15.774
C18:0	0.4	18
C12:0 ALDE ?	0.3	10.915
C15:0	0.3	15
Unidentified	0.2	13.241

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #16539]	25007	-	-	+	+	-	+	-	-	-	-	-	-	+	-	-	-	-	-	-	-	+
[Ref.: #16539]	23544	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #118853]	7929	-	+	+	+	-	+	-	-	-	-	+	-	-	-	-	-	-	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16539]	Sample type/isolated from	yellowtail (Seriola queradiata) with pseudotuberculosis
[Ref.: #16539]	Host species	Seriola quinqueradiata
[Ref.: #16539]	Country	Japan
[Ref.: #16539]	Country ISO 3 Code	JPN
[Ref.: #16539]	Continent	Asia

[Ref.: #52772]	Sample type/isolated from	Yellowtail,Seriola queradiata,w/pseudotuberculosis

[Ref.: #118853]	Sample type/isolated from	Yellowtail, spleen
[Ref.: #118853]	Geographic location (country and/or sea, region)	Kashiwajima, Otsuki
[Ref.: #118853]	Country	Japan
[Ref.: #118853]	Country ISO 3 Code	JPN
[Ref.: #118853]	Continent	Asia
[Ref.: #118853]	Isolation date	1970
* marker position based on {}

Isolation sources categories

#Host

#Fishes

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence X78105 (>99% sequence identity) for Photobacterium damselae subclade from Microbeatlas

Aquatic Samples	3204
Soil Samples	214
Animal Samples	2991
Plant Samples	45
Total Samples	6454

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16539]	Pathogenicity (animal)	yes
[Ref.: #16539]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #118853]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16539]	P.damsela (NCIMB 2058) 16S rRNA gene	X78105	1434	ENA	38293 tax ID

Availability in culture collections External links

[Ref.: #16539]

Culture collection no.

DSM 22834, ATCC 51736, CIP 104404, KCTC 12268, LMG 21869, NCIMB 2058, CCUG 35502

[Ref.: #86228]

SI-ID 43150

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Corallibacterium pacifica gen. nov., sp. nov., a Novel Bacterium of the Family Vibrionaceae Isolated from Hard Coral.	Hettiarachchi SA, Lee SJ, Lee Y, Kwon YK, Kwon KK, Yang SH, Jo E, Kang DH, Oh C	Curr Microbiol	10.1007/s00284-018-1455-7	2018	*

References

#16539

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22834

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#35165 ; Curators of the CIP;
#52772 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 35502

#68369

Automatically annotated from API 20NE .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#86228

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID43150.1 )

#118853 Collection of Institut Pasteur ; Curators of the CIP; CIP 104404
* These data were automatically processed and therefore are not curated

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