[Ref.: #8828] |
Sample type/isolated from |
stool of breast-fed infant |
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[Ref.: #67770] |
Sample type/isolated from |
Feces of a breast-fed infant |
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[Ref.: #116806] |
Sample type/isolated from |
Human, Child, feces |
* marker position based on {}
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Isolation sources categories |
#Host |
#Human |
#Child |
#Host Body Product |
#Gastrointestinal tract |
#Feces (Stool) |
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Information on genomic background e.g. entries in nucleic sequence databass Sequence information
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16S Sequence information: |
Only first 5 entries are displayed. Click here to see all.Click here to see only first 5 entries. |
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Sequence accession description |
Seq. accession number |
Sequence length (bp) |
Sequence database |
Associated NCBI tax ID |
|
[Ref.: #67770] |
Bifidobacterium bifidum gene for 16S ribosomal RNA, partial sequence |
AB437356 |
1519 |
|
1681 tax ID |
[Ref.: #67770] |
B.bifidum small subunit ribosomal RNA gene |
M38018 |
1532 |
|
500634 tax ID |
[Ref.: #20218] |
Bifidobacterium bifidum (ATCC 29521) 16S ribosomal RNA gene, partial |
M84777 |
642 |
|
1681 tax ID |
* |
[Ref.: #20218] |
Bifidobacterium bifidum DSM 20456 16S ribosomal RNA gene, partial sequence |
HM007578 |
1344 |
|
500634 tax ID |
* |
[Ref.: #20218] |
Bifidobacterium bifidum DSM 20456 = JCM 1255 16S ribosomal RNA gene and 16S-23S ribosomal RNA intergenic spacer, partial sequence |
JQ347252 |
742 |
|
500634 tax ID |
* |
[Ref.: #20218] |
16S rRNA [Bifidobacterium bifidum, DSM 20456T, Genomic, 1532 nt] |
S83624 |
1532 |
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1681 tax ID |
* |
[Ref.: #20218] |
Bifidobacterium bifidum gene for 16S rRNA, partial sequence, strain: JCM 1255 |
AB116283 |
477 |
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500634 tax ID |
* |
[Ref.: #20218] |
Bifidobacterium bifidum gene for 16S rRNA, partial sequence, strain: JCM 1255 |
AB507078 |
668 |
|
500634 tax ID |
* |
[Ref.: #20218] |
Bifidobacterium bifidum strain KCTC 3202 16S ribosomal RNA gene, partial sequence |
GU361813 |
1480 |
|
1681 tax ID |
* |
[Ref.: #20218] |
Bifidobacterium bifidum strain KCTC 3202 16S ribosomal RNA gene, partial sequence |
U25951 |
1488 |
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1681 tax ID |
* |
[Ref.: #20218] |
Bifidobacterium bifidum KCTC 3202 16S rRNA gene |
U25952 |
1488 |
|
1681 tax ID |
* |
[Ref.: #20218] |
Bifidobacterium bifidum gene for 16S rRNA, partial sequence, strain: NBRC 100015 |
AB681129 |
1453 |
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1681 tax ID |
* |
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Availability in culture collections External links
[Ref.: #8828] |
Culture collection no. |
DSM 20456, ATCC 29521, JCM 1255, BCRC 11845, BCRC 14615, CCUG 18364, CCUG 45217, CECT 870, CGMCC 1.2212, CIP 56.7, HAMBI 1380, IFO 14252, KCTC 3202, KCTC 3281, LMG 11041, LMG 8810, NBRC 100015, NBRC 14252, NCAIM B.02021, NCFB 2715, NCIMB 702715, NCTC 13001, VTT E-97795, NCDO 2715 |
[Ref.: #71340] |
SI-ID 1238
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* |
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Literature: |
Only first 10 entries are displayed. Click here to see all.Click here to see only first 10 entries. |
|
Topic |
Title |
Authors |
Journal |
DOI |
Year |
|
Phylogeny |
Effects of Pretreatment with Bifidobacterium bifidum Using 16S Ribosomal RNA Gene Sequencing in a Mouse Model of Acute Colitis Induced by Dextran Sulfate Sodium. |
Weng YJ, Jiang DX, Liang J, Ye SC, Tan WK, Yu CY, Zhou Y |
Med Sci Monit |
10.12659/MSM.928478 |
2021 |
* |
Metabolism |
Utilization of Seafood Processing By-Products for Production of Proteases by Paenibacillus sp. TKU052 and Their Application in Biopeptides' Preparation. |
Doan CT, Tran TN, Nguyen VB, Nguyen AD, Wang SL |
Mar Drugs |
10.3390/md18110574 |
2020 |
* |
Metabolism |
Inhibitory effect of Bifidobacterium bifidum ATCC 29521 on colitis and its mechanism. |
Din AU, Hassan A, Zhu Y, Zhang K, Wang Y, Li T, Wang Y, Wang G |
J Nutr Biochem |
10.1016/j.jnutbio.2020.108353 |
2020 |
* |
Phylogeny |
Characterization of the phylogenetic diversity of two novel species belonging to the genus Bifidobacterium: Bifidobacterium cebidarum sp. nov. and Bifidobacterium leontopitheci sp. nov. |
Duranti S, Lugli GA, Viappiani A, Mancabelli L, Alessandri G, Anzalone R, Longhi G, Milani C, Ossiprandi MC, Turroni F, Ventura M |
Int J Syst Evol Microbiol |
10.1099/ijsem.0.004032 |
2020 |
* |
Pathogenicity |
Analysis of hypoxia-associated dendritic cells in colitic mice and effects of probiotics on IL-10 production in inflammatory dendritic-cells under hypoxia. |
Ogita T, Miyamoto J, Hirabayashi Y, Rossi M, Mazzarella G, Takahashi I, Tanabe S, Suzuki T |
Benef Microbes |
10.3920/BM2018.0171 |
2019 |
* |
Metabolism |
Purified thioredoxin reductase from O2-sensitive Bifidobacterium bifidum degrades H2O2 by interacting with alkyl hydroperoxide reductase. |
Satoh T, Todoroki M, Kobayashi K, Niimura Y, Kawasaki S |
Anaerobe |
10.1016/j.anaerobe.2019.03.012 |
2019 |
* |
Phylogeny |
Characterization of the phylogenetic diversity of five novel species belonging to the genus Bifidobacterium: Bifidobacterium castoris sp. nov., Bifidobacterium callimiconis sp. nov., Bifidobacterium goeldii sp. nov., Bifidobacterium samirii sp. nov. and Bifidobacterium dolichotidis sp. nov. |
Duranti S, Lugli GA, Napoli S, Anzalone R, Milani C, Mancabelli L, Alessandri G, Turroni F, Ossiprandi MC, van Sinderen D, Ventura M |
Int J Syst Evol Microbiol |
10.1099/ijsem.0.003306 |
2019 |
* |
Phylogeny |
Bifidobacterium catulorum sp. nov., a novel taxon from the faeces of the baby common marmoset (Callithrix jacchus). |
Modesto M, Michelini S, Oki K, Biavati B, Watanabe K, Mattarelli P |
Int J Syst Evol Microbiol |
10.1099/ijsem.0.002545 |
2018 |
* |
Metabolism |
Preparation and prebiotic potential of pectin oligosaccharides obtained from citrus peel pectin. |
Zhang S, Hu H, Wang L, Liu F, Pan S |
Food Chem |
10.1016/j.foodchem.2017.10.071 |
2017 |
* |
Pathogenicity |
Integration of genomic and proteomic data to identify candidate genes in HT-29 cells after incubation with Bifidobacterium bifidum ATCC 29521. |
Wang BG, Wu Y, Qiu L, Shah NP, Xu F, Wei H |
J Dairy Sci |
10.3168/jds.2015-10577 |
2016 |
* |
Pathogenicity |
Effect of oligosaccharides on the adhesion of gut bacteria to human HT-29 cells. |
Altamimi M, Abdelhay O, Rastall RA |
Anaerobe |
10.1016/j.anaerobe.2016.03.010 |
2016 |
* |
Pathogenicity |
Efficacy of oral Bifidobacterium bifidum ATCC 29521 on microflora and antioxidant in mice. |
Wang BG, Xu HB, Xu F, Zeng ZL, Wei H |
Can J Microbiol |
10.1139/cjm-2015-0685 |
2015 |
* |
Genetics |
Complete genome sequence of Bifidobacterium bifidum JCM 1255(T) isolated from feces of a breast-fed infant. |
Morita H, Toh H, Oshima K, Nakano A, Shindo C, Komiya K, Arakawa K, Suda W, Honda K, Hattori M |
J Biotechnol |
10.1016/j.jbiotec.2015.06.413 |
2015 |
* |
Pathogenicity |
Fourier transform infra-red spectroscopy and flow cytometric assessment of the antibacterial mechanism of action of aqueous extract of garlic (Allium sativum) against selected probiotic Bifidobacterium strains. |
Booyens J, Thantsha MS |
BMC Complement Altern Med |
10.1186/1472-6882-14-289 |
2014 |
* |
Pathogenicity |
Influence of bovine lactoferrin on the growth of selected probiotic bacteria under aerobic conditions. |
Chen PW, Ku YW, Chu FY |
Biometals |
10.1007/s10534-014-9758-z |
2014 |
* |
Metabolism |
BopA does not have a major role in the adhesion of Bifidobacterium bifidum to intestinal epithelial cells, extracellular matrix proteins, and mucus. |
Kainulainen V, Reunanen J, Hiippala K, Guglielmetti S, Vesterlund S, Palva A, Satokari R |
Appl Environ Microbiol |
10.1128/AEM.01993-13 |
2013 |
* |
Metabolism |
Antimicrobial potential for the combination of bovine lactoferrin or its hydrolysate with lactoferrin-resistant probiotics against foodborne pathogens. |
Chen PW, Jheng TT, Shyu CL, Mao FC |
J Dairy Sci |
10.3168/jds.2012-6112 |
2013 |
* |
Pathogenicity |
Incorporation of citrus fibers in fermented milk containing probiotic bacteria. |
Sendra E, Fayos P, Lario Y, Fernandez-Lopez J, Sayas-Barbera E, Perez-Alvarez JA |
Food Microbiol |
10.1016/j.fm.2007.09.003 |
2007 |
* |
Pathogenicity |
Basic characteristics of Sporolactobacillus inulinus BCRC 14647 for potential probiotic properties. |
Huang HY, Huang SY, Chen PY, King VA, Lin YP, Tsen JH |
Curr Microbiol |
10.1007/s00284-006-0496-5 |
2007 |
* |
Pathogenicity |
Molecular properties and prebiotic effect of inulin obtained from artichoke (Cynara scolymus L.). |
Lopez-Molina D, Navarro-Martinez MD, Rojas Melgarejo F, Hiner AN, Chazarra S, Rodriguez-Lopez JN |
Phytochemistry |
10.1016/j.phytochem.2005.04.003 |
2005 |
* |
Enzymology |
Molecular identification of monomeric aspartate racemase from Bifidobacterium bifidum. |
Yamashita T, Ashiuchi M, Ohnishi K, Kato S, Nagata S, Misono H |
Eur J Biochem |
10.1111/j.1432-1033.2004.04445.x |
2004 |
* |
Transcriptome |
Sequence analysis of 16S rRNA genes amplified from two ribosomal RNA gene clusters of Bifidobacterium bifidum. |
Yoon JH, Yim DK, Goodfellow M, Park YH |
Antonie Van Leeuwenhoek |
10.1023/a:1002025100444 |
1999 |
* |
Enzymology |
Viability and enzymatic activity of bifidobacteria in milk. |
Hughes DB, Hoover DG |
J Dairy Sci |
10.3168/jds.S0022-0302(95)76634-6 |
1995 |
* |
Phylogeny |
Phylogenetic evidence for the transfer of Eubacterium suis to the genus Actinomyces as Actinomyces suis comb. nov. |
Ludwig W, Kirchhof G, Weizenegger M, Weiss N |
Int J Syst Bacteriol |
10.1099/00207713-42-1-161 |
1992 |
* |
Metabolism |
Binding of mutagens by fractions of the cell wall skeleton of lactic acid bacteria on mutagens. |
Zhang XB, Ohta Y |
J Dairy Sci |
10.3168/jds.S0022-0302(91)78306-9 |
1991 |
* |
Metabolism |
In vitro binding of mutagenic pyrolyzates to lactic acid bacterial cells in human gastric juice. |
Zhang XB, Ohta Y |
J Dairy Sci |
10.3168/jds.S0022-0302(91)78221-0 |
1991 |
* |
Metabolism |
Comparison of mupirocin-based media for selective enumeration of bifidobacteria in probiotic supplements. |
Bunesova V, Musilova S, Geigerova M, Pechar R, Rada V |
J Microbiol Methods |
10.1016/j.mimet.2014.12.016 |
2014 |
* |
Metabolism |
Role of extracellular transaldolase from Bifidobacterium bifidum in mucin adhesion and aggregation. |
Gonzalez-Rodriguez I, Sanchez B, Ruiz L, Turroni F, Ventura M, Ruas-Madiedo P, Gueimonde M, Margolles A |
Appl Environ Microbiol |
10.1128/AEM.08024-11 |
2012 |
* |
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Promoting Probiotics Survival by Microencapsualtion with Hylon Starch and Genipin Cross-linked Coatings in Simulated Gastro-intestinal Condition and Heat Treatment. |
Khosravi Zanjani MA, Ehsani MR, Ghiassi Tarzi B, Sharifan A |
Iran J Pharm Res |
|
2018 |
* |
|
A Novel Lactobacillus casei LP1 Producing 1,4-Dihydroxy-2-Naphthoic Acid, a Bifidogenic Growth Stimulator. |
Kang JE, Kim TJ, Moon GS |
Prev Nutr Food Sci |
10.3746/pnf.2015.20.1.78 |
2015 |
* |
|
Microencapsulation of Probiotics by Calcium Alginate-gelatinized Starch with Chitosan Coating and Evaluation of Survival in Simulated Human Gastro-intestinal Condition. |
Khosravi Zanjani MA, Ghiassi Tarzi B, Sharifan A, Mohammadi N |
Iran J Pharm Res |
|
2014 |
* |
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In vitro prebiotic evaluation of exopolysaccharides produced by marine isolated lactic acid bacteria. |
Hongpattarakere T, Cherntong N, Wichienchot S, Kolida S, Rastall RA |
Carbohydr Polym |
10.1016/j.carbpol.2011.08.085 |
2011 |
* |
|
Evaluation of Microencapsulated Synbiotic Preparations Containing Lactobionic Acid. |
Goderska K, Kozlowski P |
Appl Biochem Biotechnol |
10.1007/s12010-021-03622-9 |
2021 |
* |
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- References
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#8828 |
Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ;
DSM 20456
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#35445 |
; Curators of the CIP;
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#67770 |
Japan Collection of Microorganism (JCM) ; Curators of the JCM;
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#68371 |
Automatically annotated from API 50CH acid .
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#68382 |
Automatically annotated from API zym .
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#69479 |
João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.:
MicrobeAtlas 1.0 beta
.
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#71340 |
Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.:
StrainInfo: A central database for resolving microbial strain identifiers
.
(
DOI 10.60712/SI-ID1238.1 )
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#116806 |
Collection of Institut Pasteur ; Curators of the CIP;
CIP 56.7
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- * These data were automatically processed and therefore are not curated
Change proposal
Successfully sent
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