Name: Streptomyces tendae DSM 40101
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 16037

Type strain:

Species: Streptomyces tendae

Culture col. no.: DSM 40101, ATCC 19812, CBS 565.68, IFO 12822, ISP 5101, JCM 4149, NBRC 12822, RIA 1092, RIA 534, ETH 11313, BCRC 12167, CBS 431.59, CGMCC 4.1460, ICMP 132, IFM 1176, IMET 40459, JCM 4610, KCTC 19061, LMG 19314, LMG 5987, NCIMB 9614, NRRL B-2313, VKM Ac-1889

Strain history: KCC S-0149 <-- Y. Okami (NIHJ 179) <-- ETH 11313.

NCBI tax ID(s): 1932 (species)

SI-ID 5019

LMG 5987, ATCC 19812, CCRC 12167, DSM 40101, ICMP 132, IFO 12822, IMET 40459, JCM 4149, JCM 4610, LMG 19314, NCIMB 9614, NRRL B-2313, PDDCC 132, VKM Ac-1889, CBS 431.59, AS 4.1460, NBRC 12822, BCRC 12167, KCTC 19061, NCIB 9614, CGMCC 4.1460, CBS 565.68

Other strains from Streptomyces tendae

S. tendae Tü 117, DSM 40729, JCM 4987
S. tendae Tü 353, DSM 40732

Section

Streptomyces tendae DSM 40101 is a spore-forming, mesophilic bacterium that produces antibiotic compounds and was isolated from soil.

antibiotic compound production
spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces tendae**
	Full Scientific Name (LPSN)	Streptomyces tendae Ettlinger et al. 1958 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %92.151

Multimedia content

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Caption:

Medium 65 37°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

		Temperature
[Ref.: #9313]	growth	37 °C
[Ref.: #18533]	optimum	30 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #9313]	Temperature range	mesophilic
[Ref.: #18533]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

[Ref.: #9313]	Name of produced compound	magnamycin
[Ref.: #9313]	Name of produced compound	aminoacylase
[Ref.: #9313]	Name of produced compound	restriction endonuclease SteI
[Ref.: #20216]	Name of produced compound	Carbomycin (Magnamycin)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #18533]	arabinose ChEBI	+
[Ref.: #68368]	arginine ChEBI	-	hydrolysis	* from API 20E
[Ref.: #18533]	cellulose ChEBI	-
[Ref.: #68368]	citrate ChEBI	+	assimilation	* from API 20E
[Ref.: #18533]	fructose ChEBI	+
[Ref.: #68368]	gelatin ChEBI	+	hydrolysis	* from API 20E
[Ref.: #18533]	glucose ChEBI	+
[Ref.: #68368]	lysine ChEBI	-	degradation	* from API 20E
[Ref.: #18533]	mannitol ChEBI	+
[Ref.: #18533]	myo-inositol ChEBI	+
[Ref.: #68368]	ornithine ChEBI	-	degradation	* from API 20E
[Ref.: #18533]	raffinose ChEBI	-
[Ref.: #18533]	rhamnose ChEBI	-
[Ref.: #18533]	sucrose ChEBI	-
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	+	hydrolysis	* from API 20E
[Ref.: #18533]	xylose ChEBI	-
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #67770]	carbomycin	yes
[Ref.: #68368]	acetoin ChEBI	yes	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	yes	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	+		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	arginine dihydrolase	-	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	-	3.2.1.23	* from API 20E
[Ref.: #68368]	gelatinase	+		* from API 20E
[Ref.: #68368]	lysine decarboxylase	-	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	-	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	+	3.5.1.5	* from API 20E

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #18533]	93	-	-	-	-	+	+	+	-	-	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9313]	Sample type/isolated from	soil
[Ref.: #9313]	Country	France
[Ref.: #9313]	Country ISO 3 Code	FRA
[Ref.: #9313]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	Tende
[Ref.: #67770]	Country	France
[Ref.: #67770]	Country ISO 3 Code	FRA
[Ref.: #67770]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

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Global distribution of 16S sequence AB184172 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples	991
Soil Samples	2201
Animal Samples	1970
Plant Samples	240
Total Samples	5402

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18533]	Biosafety level	1	German classification
[Ref.: #9313]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces tendae strain DSM40101 16S-23S intergenic spacer region, partial sequence	AF363490	277	ENA	1932 tax ID	*
[Ref.: #20218]	Streptomyces tendae 16S ribosomal RNA, complete sequence	D63873	1530	ENA	1932 tax ID	*
[Ref.: #20218]	Streptomyces tendae gene for 16S ribosomal RNA, partial sequence, strain: JCM 4149	D44016	121	ENA	1932 tax ID	*
[Ref.: #20218]	Streptomyces tendae gene for 16S rRNA, partial sequence, strain: NBRC 12822	AB184172	1470	ENA	1932 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces tendae JCM 4610	GCA_014650435	scaffold	GenBank	1932 tax ID
[Ref.: #66792]	Streptomyces tendae strain JCM 4610	1932.11	wgs	PATRIC	1932 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces tendae JCM 4610 NCBI: GCA_014650435.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces tendae strain JCM 4610 PATRIC: 1932.11
[Ref.: #69480]	motile	no	94.727	no
[Ref.: #69480]	gram-positive	yes	88.439	no
[Ref.: #69480]	anaerobic	no	99.065	no
[Ref.: #69480]	aerobic	yes	93.52	no
[Ref.: #69480]	halophile	no	88.21	no
[Ref.: #69480]	spore-forming	yes	94.632	no
[Ref.: #69480]	glucose-util	yes	89.983	no
[Ref.: #69480]	flagellated	no	98.018	no
[Ref.: #69480]	thermophile	no	98.814	no
[Ref.: #69480]	glucose-ferment	no	89.03	no

Availability in culture collections External links

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Culture collection no.

DSM 40101, ATCC 19812, CBS 565.68, IFO 12822, ISP 5101, JCM 4149, NBRC 12822, RIA 1092, RIA 534, ETH 11313, BCRC 12167, CBS 431.59, CGMCC 4.1460, ICMP 132, IFM 1176, IMET 40459, JCM 4610, KCTC 19061, LMG 19314, LMG 5987, NCIMB 9614, NRRL B-2313, VKM Ac-1889

[Ref.: #85110]

SI-ID 5019

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces nanningensis sp. nov. a novel Streptomycete from forest soil.	Jiang Y, Li WJ, Xu P, Li MG, Wen ML, Du GH, Xu LH, Jiang CL	Antonie Van Leeuwenhoek	10.1007/s10482-004-3210-2	2005	*

References

#9313

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40101

#18533

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20216

Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) Curators of the HKI: Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#85110

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID5019.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces tendae JCM 4610

Streptomyces tendae strain JCM 4610

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