Name: Streptomyces rimosus F.D. 10326
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 15515

Type strain:

Species: Streptomyces rimosus

Strain Designation: F.D. 10326

Culture col. no.: DSM 40260, ATCC 10970, ATCC 23955, CBS 437.51, CBS 938.68, CUB 205, DSM 41132, ETH 20240, IFO 12907, IMRU 3558, ISP 5260, JCM 4073, JCM 4667, NBRC 12907, NCIMB 8229, NRRL 2234, RIA 1185, RIA 606, BCRC 11612, CECT 3144, CGMCC 4.1438, HAMBI 1066, HUT 6064, HUT 6100, ICMP 1009, ICMP 655, ICMP 919, IFM 1065, IFO 3441, IFO 3725, IMET 40364, KCTC 1077, LMG 19352, LMG 5984, LMG 8596, NBIMCC 1700, NBRC 3441, NBRC 3725, NRRL B-2659, NRRL ISP-5260, VKM Ac-849, VTT E-072714

Strain history: KCC S-0073 <-- T. Yamaguchi (IAM 0014) <-- MTHU <-- NRRL 2234 <-- Chas. Pfizer & Co.; FD 10326.

NCBI tax ID(s): 1265868 (strain), 1927 (species)

SI-ID 216657

LMG 5984, ATCC 10970, ATCC 23955, CCM 3231, CECT 3144, DSM 40260, HUT 6064, HUT 6100, IAM 0014, ICMP 919, IFO 12907, IFO 3390, IFO 3441, IFO 3725, IMET 40364, JCM 4073, JCM 4667, LMG 19352, NCIB 8229, NRRL 2234, PDDCC 919, LMG 8596, DSM 41132, NCIMB 8229, CCRC 11612, NRRL B-2659, VKM Ac-849, NRRL B-2234, CBS 938.68, CBS 437.51, AS 4.1438, KCTC 1077, NBRC 12907, NBRC 3441, NBRC 3725, BCRC 11612, HAMBI 1066, ICMP 655, ICMP 1009, KACC 20082, DSM 205, NBIMCC 1700, UAMH 6126, NCIM 2213, CGMCC 4.1438, VTT E-072714

Other strains from Streptomyces rimosus

S. rimosus STI40127(IMET), INA13216/54, IMET ...
S. rimosus ST005014(HKI),
S. rimosus ST005015(HKI),
S. rimosus ST005070(HKI),
S. rimosus ST005071(HKI),
S. rimosus ST004899(HKI),

Section

Streptomyces rimosus F.D. 10326 is a spore-forming, mesophilic bacterium that produces antibiotic compounds and was isolated from soil.

antibiotic compound production
spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces rimosus**
	Full Scientific Name (LPSN)	Streptomyces rimosus Sobin et al. 1953 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %93.86

Multimedia content

[Ref.: #9414]

Intellectual property rights:

[Ref.: #9414]

Caption:

Medium 65 28°C

[Ref.: #9414]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #9414]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #9414]

Culture medium growth

[Ref.: #9414]

Culture medium link

Medium recipe at MediaDive

[Ref.: #9414]

Culture medium composition

expand / minimize

[Ref.: #9414]

Culture medium

STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)

[Ref.: #9414]

Culture medium growth

[Ref.: #9414]

Culture medium link

Medium recipe at MediaDive

[Ref.: #9414]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #9414]			growth	28 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #9414]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

[Ref.: #9414]	Name of produced compound	oxytetracycline
[Ref.: #9414]	Name of produced compound	rimocidin

[Ref.: #67770]

Observation

quinones: MK-9(H₆), MK-9(H₈)

	Metabolite production	Metabolite	Production
[Ref.: #67770]		oxytetracycline ChEBI	yes
[Ref.: #67770]		rimocidine ChEBI	yes

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9414]	Sample type/isolated from	soil

[Ref.: #67770]	Sample type/isolated from	Soil
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JN566021 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples	9
Soil Samples	110
Animal Samples	18
Plant Samples	9
Total Samples	146

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #9414]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces rimosus subsp. rimosus strain CGMCC 4.1438 16S ribosomal RNA gene, partial sequence	JN566021	1375	ENA	132474 tax ID	*
[Ref.: #20218]	Streptomyces rimosus subsp. rimosus gene for 16S rRNA	AB045883	1485	ENA	132474 tax ID	*
[Ref.: #20218]	Streptomyces rimosus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4667	D44295	121	ENA	1927 tax ID	*
[Ref.: #20218]	Streptomyces rimosus subsp. rimosus gene for 16S rRNA, partial sequence, strain: NBRC 12907	AB184236	1469	ENA	132474 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces rimosus subsp. rimosus NRRL ISP-5260	GCA_000717285	contig	GenBank	132474 tax ID
[Ref.: #67770]	Streptomyces rimosus subsp. rimosus ATCC 10970	GCA_000331185	complete	GenBank	1265868 tax ID
[Ref.: #67770]	Streptomyces rimosus strain ATCC 10970 chromosome, complete genome	CP023688		GenBank	1927 tax ID
[Ref.: #67770]	Streptomyces rimosus subsp. rimosus NRRL B-2659	GCA_000717145	contig	GenBank	132474 tax ID
[Ref.: #66792]	Streptomyces rimosus strain ATCC 10970	1927.44	complete	PATRIC	1927 tax ID	*
[Ref.: #66792]	Streptomyces rimosus subsp. rimosus ATCC 10970	1265868.3	wgs	PATRIC	1265868 tax ID	*

[Ref.: #67770]

GC-content

71.88 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces rimosus subsp. rimosus ATCC 10970 NCBI: GCA_000331185.2
[Ref.: #69481]	spore-forming	yes	100	no

Availability in culture collections External links

[Ref.: #9414]

Culture collection no.

DSM 40260, ATCC 10970, ATCC 23955, CBS 437.51, CBS 938.68, CUB 205, DSM 41132, ETH 20240, IFO 12907, IMRU 3558, ISP 5260, JCM 4073, JCM 4667, NBRC 12907, NCIMB 8229, NRRL 2234, RIA 1185, RIA 606, BCRC 11612, CECT 3144, CGMCC 4.1438, HAMBI 1066, HUT 6064, HUT 6100, ICMP 1009, ICMP 655, ICMP 919, IFM 1065, IFO 3441, IFO 3725, IMET 40364, KCTC 1077, LMG 19352, LMG 5984, LMG 8596, NBIMCC 1700, NBRC 3441, NBRC 3725, NRRL B-2659, NRRL ISP-5260, VKM Ac-849, VTT E-072714

[Ref.: #84601]

SI-ID 216657

Literature:

Only first 10 entries are displayed. Click here to see all.

	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces zagrosensis sp. nov., isolated from soil.	Mohammadipanah F, Hamedi J, Sproer C, Rohde M, Montero-Calasanz MDC, Klenk HP	Int J Syst Evol Microbiol	10.1099/ijs.0.064527-0	2014	*
Metabolism	Reference-Grade Genome and Large Linear Plasmid of Streptomyces rimosus: Pushing the Limits of Nanopore Sequencing.	Slemc L, Jakse J, Filisetti A, Baranasic D, Rodriguez-Garcia A, Del Carratore F, Marino SM, Zucko J, Starcevic A, Sala M, Perez-Bonilla M, Sanchez-Hidalgo M, Gonzalez I, Reyes F, Genilloud O, Springthorpe V, Goranovic D, Kosec G, Thomas GH, Lucrezia D, Petkovic H, Tome M	Microbiol Spectr	10.1128/spectrum.02434-21	2022	*
Phylogeny	Streptomyces tardus sp. nov.: A Slow-Growing Actinobacterium Producing Candicidin, Isolated From Sediments of the Trondheim Fjord.	Kralova S, Sandoval-Powers M, Fawwal DV, Degnes KF, Lewin AS, Klinkenberg G, Nguyen GS, Liles MR, Wentzel A	Front Microbiol	10.3389/fmicb.2021.714233	2021	*
Phylogeny	Identification, functional and structural characterization of novel aminoglycoside phosphotransferase APH(3'')-Id from Streptomyces rimosus subsp. rimosus ATCC 10970.	Alekseeva MG, Boyko KM, Nikolaeva AY, Mavletova DA, Rudakova NN, Zakharevich NV, Korzhenevskiy DA, Ziganshin RH, Popov VO, Danilenko VN	Arch Biochem Biophys	10.1016/j.abb.2019.06.008	2019	*
Phylogeny	Reclassification of Streptomyces rimosus subsp. paromomycinus as Streptomyces paromomycinus sp. nov.	Komaki H, Tamura T	Int J Syst Evol Microbiol	10.1099/ijsem.0.003545	2019	*
Metabolism	Taxonomic study of a salt tolerant Streptomyces sp. strain C-2012 and the effect of salt and ectoine on lon expression level.	Sadeghi A, Soltani BM, Jouzani GS, Karimi E, Nekouei MK, Sadeghizadeh M	Microbiol Res	10.1016/j.micres.2013.06.010	2013	*
Genetics	Draft Genome Sequence of the Oxytetracycline-Producing Bacterium Streptomyces rimosus ATCC 10970.	Pethick FE, Macfadyen AC, Tang Z, Sangal V, Liu TT, Chu J, Kosec G, Petkovic H, Guo M, Kirby R, Hoskisson PA, Herron PR, Hunter IS	Genome Announc	10.1128/genomeA.00063-13	2013	*
Metabolism	Identification of phosphorylation sites in aminoglycoside phosphotransferase VIII from Streptomyces rimosus.	Elizarov SM, Alekseeva MG, Novikov FN, Chilov GG, Maslov DA, Shtil AA, Danilenko VN	Biochemistry (Mosc)	10.1134/S0006297912110041	2012	*
Metabolism	Efficient bioconversion of quercetin into a novel glycoside by Streptomyces rimosus subsp. rimosus ATCC 10970.	Ma B, Zeng J, Shao L, Zhan J	J Biosci Bioeng	10.1016/j.jbiosc.2012.07.020	2012	*
Phylogeny	Streptomyces daliensis sp. nov. from soil.	Xu P, Li WJ, Tang SK, Gao HY, Xu LH, Jiang CL	Antonie Van Leeuwenhoek	10.1007/s10482-005-9010-5	2005	*
Enzymology	Screening and search for novel inhibitors of DD-peptidase 64-575.	Rozbicka B, Kurzatkowski W	Acta Pol Pharm		2000	*
Metabolism	Novel metabolites of warfarin produced by Beauveria bassiana and Streptomyces rimosus: a novel application of hplc-nmr.	Cannell RJ, Rashid T, Ismail IM, Sidebottom PJ, Knaggs AR, Marshall PS	Xenobiotica	10.1080/004982597240659	1997	*
Enzymology	The temperate phages RP2 and RP3 of Streptomyces rimosus.	Rausch H, Vesligaj M, Pocta D, Biukovic G, Pigac J, Cullum J, Schmieger H, Hranueli D	J Gen Microbiol	10.1099/00221287-139-10-2517	1993	*
Phylogeny	Characterization and persistence of actinophage RP2 isolated from Streptomyces rimosus ATCC 10970.	Hranueli D, Pigac J, Vesligaj M	J Gen Microbiol	10.1099/00221287-114-2-295	1979	*
	Presence of the Weakly Pathogenic Fusarium poae in the Fusarium Head Blight Disease Complex Hampers Biocontrol and Chemical Control of the Virulent Fusarium graminearum Pathogen.	Tan J, De Zutter N, De Saeger S, De Boevre M, Tran TM, van der Lee T, Waalwijk C, Willems A, Vandamme P, Ameye M, Audenaert K	Front Plant Sci	10.3389/fpls.2021.641890	2021	*
	Quantitative Morphological Analysis of Filamentous Microorganisms in Cocultures and Monocultures: Aspergillus terreus and Streptomyces rimosus Warfare in Bioreactors.	Scigaczewska A, Boruta T, Bizukojc M	Biomolecules	10.3390/biom11111740	2021	*
	Bilateral symmetry of linear streptomycete chromosomes.	Algora-Gallardo L, Schniete JK, Mark DR, Hunter IS, Herron PR	Microb Genom	10.1099/mgen.0.000692	2021	*

References

#9414

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40260

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#84601

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID216657.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Streptomyces rimosus subsp. rimosus in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Streptomyces rimosus subsp. rimosus ATCC 10970

Change proposal

Change proposal