Name: Streptomyces neyagawaensis DSM 40588
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 15422

Type strain:

Species: Streptomyces neyagawaensis

Culture col. no.: DSM 40588, ATCC 27449, CBS 778.72, IFO 13477, IFO 3784, ISP 5588, JCM 4796, NBRC 13477, NBRC 3784, NRRL B-3092, RIA 1438, BCRC 15184, CGMCC 4.1990, MTCC 4732, NCAIM B.02006, VKM Ac-1915

Strain history: KCC S-0796 <-- IFO 13477 <-- SAJ <-- ISP 5588 <-- H. Yamamoto 41895.

NCBI tax ID(s): 42238 (species)

SI-ID 92921

ATCC 27449, IFO 3784, IFO 13477, DSM 40588, JCM 4796, NRRL B-3092, VKM Ac-1915, CBS 778.72, NBRC 13477, NBRC 3784, KACC 20130, BCRC 15184, CCRC 15184, NCAIM B.02006, CGMCC 4.1990

Section

Streptomyces neyagawaensis DSM 40588 is a mesophilic bacterium that produces antibiotic compounds and was isolated from soil.

antibiotic compound production
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces neyagawaensis**
	Full Scientific Name (LPSN)	Streptomyces neyagawaensis Yamamoto et al. 1960 (Approved Lists 1980)

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #9665]			growth	28 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #9665]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

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Name of produced compound

folimycin

	Metabolite production	Metabolite	Production
[Ref.: #67770]		concanamycin A ChEBI	yes

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9665]	Sample type/isolated from	soil
[Ref.: #9665]	Country	Japan
[Ref.: #9665]	Country ISO 3 Code	JPN
[Ref.: #9665]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	Neyagawa, Osaka Pref.
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

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Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces neyagawaensis gene for 16S ribosomal RNA, 23S ribosomal RNA, complete and partial sequence, strain:ATCC 27449	AB026219	1859	ENA	42238 tax ID	*
[Ref.: #20218]	Streptomyces neyagawaensis gene for 16S rRNA, 16S-23S intergenic spacer, 23S rRNA, partial and complete sequence, isolate:ATCC 27449, clone:NE1	AB041129	325	ENA	42238 tax ID	*
[Ref.: #20218]	Streptomyces neyagawaensis genes for 16S ribosomal RNA,16S-23S rDNA spacer, 23S ribosomal RNA, isolate:ATCC 27449	AB042783	332	ENA	42238 tax ID	*
[Ref.: #20218]	Streptomyces neyagawaensis strain DSM40588 16S-23S intergenic spacer region, partial sequence	AF363498	306	ENA	42238 tax ID	*
[Ref.: #20218]	Streptomyces neyagawaensis 16S ribosomal RNA, complete sequence	D63869	1531	ENA	42238 tax ID	*
[Ref.: #20218]	Streptomyces neyagawaensis strain CGMCC 4.1990 16S ribosomal RNA gene, partial sequence	JN566030	1389	ENA	42238 tax ID	*
[Ref.: #20218]	Streptomyces neyagawaensis partial 16S rRNA gene, strain ISP 5588	AJ399493	1449	ENA	42238 tax ID	*
[Ref.: #20218]	Streptomyces neyagawaensis gene for 16S ribosomal RNA, partial sequence, strain: JCM 4796	D44369	121	ENA	42238 tax ID	*
[Ref.: #20218]	Streptomyces neyagawaensis strain KCCM 12304 clone ITS 16S-23S ribosomal RNA intergenic spacer, partial sequence	AY296945	280	ENA	42238 tax ID	*
[Ref.: #20218]	Streptomyces neyagawaensis strain KCCM 12304 clone ITS19 16S-23S ribosomal RNA intergenic spacer, partial sequence	AY296946	269	ENA	42238 tax ID	*
[Ref.: #20218]	Streptomyces neyagawaensis strain KCCM 12304 clone ITS22 16S-23S ribosomal RNA intergenic spacer, partial sequence	AY296947	271	ENA	42238 tax ID	*
[Ref.: #20218]	Streptomyces neyagawaensis strain KCCM 12304 clone ITS26 16S-23S ribosomal RNA intergenic spacer, partial sequence	AY296948	274	ENA	42238 tax ID	*
[Ref.: #20218]	Streptomyces neyagawaensis strain KCCM 12304 clone ITS5 16S-23S ribosomal RNA intergenic spacer, partial sequence	AY296949	274	ENA	42238 tax ID	*
[Ref.: #20218]	Streptomyces neyagawaensis strain KCCM 12304 clone ITS8 16S-23S ribosomal RNA intergenic spacer, partial sequence	AY296950	274	ENA	42238 tax ID	*
[Ref.: #20218]	Streptomyces neyagawaensis gene for 16S rRNA, partial sequence, strain: NBRC 13477	AB184431	1472	ENA	42238 tax ID	*
[Ref.: #20218]	Streptomyces neyagawaensis gene for 16S rRNA, partial sequence, strain: NBRC 3784	AB184799	1478	ENA	42238 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces neyagawaensis NRRL B-3092	GCA_001418645	scaffold	GenBank	42238 tax ID
[Ref.: #66792]	Streptomyces neyagawaensis ATCC 27449	651716940	draft	JGI IMG/M	42238 tax ID	*
[Ref.: #66792]	Streptomyces neyagawaensis JCM 4796	GCA_023516595	contig	GenBank	42238 tax ID	*
[Ref.: #66792]	Streptomyces neyagawaensis JCM 4796	GCA_028863365	contig	GenBank	42238 tax ID	*

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GC-content

72.4 mol%

thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

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Culture collection no.

DSM 40588, ATCC 27449, CBS 778.72, IFO 13477, IFO 3784, ISP 5588, JCM 4796, NBRC 13477, NBRC 3784, NRRL B-3092, RIA 1438, BCRC 15184, CGMCC 4.1990, MTCC 4732, NCAIM B.02006, VKM Ac-1915

[Ref.: #84510]

SI-ID 92921

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces heilongjiangensis sp. nov., a novel actinomycete that produces borrelidin isolated from the root surface of soybean [Glycine max (L.) Merr].	Liu C, Wang X, Yan Y, Wang J, Zhang B, Zhang J, Xiang W	Int J Syst Evol Microbiol	10.1099/ijs.0.041483-0	2012	*
Metabolism	Organization of the biosynthetic gene cluster for the macrolide concanamycin A in Streptomyces neyagawaensis ATCC 27449.	Haydock SF, Appleyard AN, Mironenko T, Lester J, Scott N, Leadlay PF	Microbiology (Reading)	10.1099/mic.0.28194-0	2005	*
Phylogeny	Streptomyces plumbidurans sp. nov., a Pb(2+)-tolerant actinomycete.	Jiao Y, Fan BJ, Cao YR, Zhu GX, Wu YJ, Zhang Y, Hou XL, He JB, Liang LM	Int J Syst Evol Microbiol	10.1099/ijsem.0.005505	2022	*

References

#9665

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40588

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#84510

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID92921.1 )

* These data were automatically processed and therefore are not curated

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