Streptomyces avidinii MA-833 | Type strain | DSM 40526, ATCC 27419, CBS 730.72, IFO 13429, ISP 5526, NBRC 13429, NRRL 3077, RIA 1390, CCUG 54639, NCIMB 11996, JCM 4726, BCRC 13384, CGMCC 4.1583, IMET 43538, KCTC 9757, MTCC 1808, PCM 2342, VKM Ac-1074

Caption:

Medium 65 28°C

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Information on culture and growth conditions Culture and growth conditions

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

Culture medium growth

Medium recipe at MediaDive

Culture medium link

Culture medium composition

Culture medium

ISP 2

Culture medium growth

Culture medium composition

Culture medium

ISP 3

Culture medium growth

Culture medium composition

Culture medium

ISP 4

Culture medium growth

Culture medium composition

Culture medium

ISP 5

Culture medium growth

Culture medium composition

Culture medium

ISP 6

Culture medium growth

Culture medium composition

Culture medium

ISP 7

Culture medium growth

Culture medium composition

Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

Culture medium growth

Medium recipe provided by DSMZ

Culture medium link

		Temperature
[Ref.: #9615]	growth	28 °C
[Ref.: #19470]	optimum	28 °C
[Ref.: #60274]	growth	30 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #9615]	Temperature range	mesophilic
[Ref.: #19470]	Temperature range	mesophilic
[Ref.: #60274]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #60274]

Oxygen tolerance

aerobe

[Ref.: #19470]	Spore description	Formation of spore chains (rectiflixibilis), spore surface smooth
[Ref.: #19470]	Type of spore	spore
[Ref.: #19470]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

[Ref.: #9615]	Name of produced compound	antibiotic MSD-235 complex
[Ref.: #20216]	Name of produced compound	Streptavidin (MSD-235 complex)
[Ref.: #67770]	Name of produced compound	Antibiotic MSD-235 (streptavidin)

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #19470]		NaCl		maximum	2.5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #19470]	arabinose ChEBI	-
[Ref.: #68368]	arginine ChEBI	+	hydrolysis	* from API 20E
[Ref.: #19470]	cellulose ChEBI	-
[Ref.: #68368]	citrate ChEBI	+	assimilation	* from API 20E
[Ref.: #19470]	fructose ChEBI	-
[Ref.: #68368]	gelatin ChEBI	+	hydrolysis	* from API 20E
[Ref.: #19470]	glucose ChEBI	+
[Ref.: #68368]	lysine ChEBI	+	degradation	* from API 20E
[Ref.: #19470]	mannitol ChEBI	-
[Ref.: #19470]	myo-inositol ChEBI	-
[Ref.: #68368]	ornithine ChEBI	+	degradation	* from API 20E
[Ref.: #19470]	raffinose ChEBI	-
[Ref.: #19470]	rhamnose ChEBI	-
[Ref.: #19470]	sucrose ChEBI	-
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	+	hydrolysis	* from API 20E
[Ref.: #19470]	xylose ChEBI	-
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #68368]	acetoin ChEBI	yes	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	+		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	arginine dihydrolase	+	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	-	3.2.1.23	* from API 20E
[Ref.: #68368]	gelatinase	+		* from API 20E
[Ref.: #68368]	lysine decarboxylase	+	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	+	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	+	3.5.1.5	* from API 20E

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #19470]	330	-	+	+	+	+	-	+	-	-	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Soil
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence AY999904 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples	1680
Soil Samples	19336
Animal Samples	1702
Plant Samples	3681
Total Samples	26399

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #9615]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #19470]	Biosafety level	1	Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces avidinii gene for 16S rRNA, partial sequence	AB122769	564	ENA	1895 tax ID	*
[Ref.: #20218]	Streptomyces avidinii gene for 16S ribosomal RNA, partial sequence, strain: JCM 4726	D44313	120	ENA	1895 tax ID	*
[Ref.: #20218]	Streptomyces avidinii gene for 16S rRNA, partial sequence, strain: NBRC 13429	AB184395	1476	ENA	1895 tax ID	*
[Ref.: #20218]	Streptomyces avidinii strain NRRL 3077 16S ribosomal RNA gene, partial sequence	AY999904	1435	ENA	1895 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptomyces avidinii JCM 4726	GCA_014650695	scaffold	GenBank	1895 tax ID	*
[Ref.: #66792]	Streptomyces avidinii DSM 40526	GCA_017874515	contig	GenBank	1895 tax ID	*
[Ref.: #66792]	Streptomyces avidinii strain DSM 40526	1895.8	wgs	PATRIC	1895 tax ID	*
[Ref.: #66792]	Streptomyces avidinii strain JCM 4726	1895.6	wgs	PATRIC	1895 tax ID	*
[Ref.: #66792]	Streptomyces avidinii DSM 40526	2913541555	draft	JGI IMG/M	1895 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces avidinii JCM 4726 NCBI: GCA_014650695.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces avidinii JCM 4726 NCBI: GCA_014650695.1
[Ref.: #69480]	flagellated	no	97.643	no
[Ref.: #69480]	gram-positive	yes	86.243	no
[Ref.: #69480]	anaerobic	no	99.064	yes
[Ref.: #69480]	aerobic	yes	89.971	no
[Ref.: #69480]	halophile	no	95.588	no
[Ref.: #69480]	spore-forming	yes	94.605	yes
[Ref.: #69480]	thermophile	no	99.344	yes
[Ref.: #69480]	glucose-util	yes	91.003	no
[Ref.: #69480]	motile	no	94.304	no
[Ref.: #69480]	glucose-ferment	no	90.147	no

Availability in culture collections External links