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Information on genomic background e.g. entries in nucleic sequence databass Sequence information
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16S Sequence information: |
Only first 5 entries are displayed. Click here to see all.Click here to see only first 5 entries. |
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Sequence accession description |
Seq. accession number |
Sequence length (bp) |
Sequence database |
Associated NCBI tax ID |
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[Ref.: #9330] |
Streptomyces aureofaciens 16S ribosomal RNA gene, partial sequence |
AY207608 |
1512 |
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1894 tax ID |
[Ref.: #20218] |
Streptomyces aureofaciens strain DSM 40127 clone ITS30 16S-23S ribosomal RNA intergenic spacer, partial sequence |
AY296979 |
236 |
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1894 tax ID |
* |
[Ref.: #20218] |
Streptomyces aureofaciens strain DSM 40127 clone ITS9 16S-23S ribosomal RNA intergenic spacer, partial sequence |
AY296980 |
241 |
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1894 tax ID |
* |
[Ref.: #20218] |
Streptomyces aureofaciens strain IMET 43577 16S ribosomal RNA gene, partial sequence |
AY289116 |
1509 |
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1894 tax ID |
* |
[Ref.: #20218] |
Streptomyces bobili gene for 16S rRNA |
AB045876 |
1483 |
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67280 tax ID |
* |
[Ref.: #20218] |
Streptomyces aureofaciens gene for 16S rRNA |
AB045881 |
1473 |
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1894 tax ID |
* |
[Ref.: #20218] |
Streptomyces aureofaciens gene for 16S ribosomal RNA, partial sequence, strain: JCM 4624 |
D44273 |
120 |
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1894 tax ID |
* |
[Ref.: #20218] |
Streptomyces aureofaciens gene for 16S rRNA, partial sequence, strain: NBRC 12594 |
AB184105 |
1468 |
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1894 tax ID |
* |
[Ref.: #20218] |
Streptomyces aureofaciens gene for 16S rRNA, partial sequence, strain: NBRC 12843 |
AB184189 |
1460 |
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1894 tax ID |
* |
[Ref.: #20218] |
Streptomyces aureofaciens gene for 16S rRNA, partial sequence, strain: NBRC 3712 |
AB184783 |
1468 |
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1894 tax ID |
* |
[Ref.: #20218] |
Streptomyces aureofaciens 16S rRNA gene, strain NRRL 2209 |
Y15504 |
1469 |
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1894 tax ID |
* |
[Ref.: #20218] |
Shewanella sp. SPSA4 partial 16S rRNA gene, strain SPSA4 |
AM884366 |
486 |
|
470054 tax ID |
* |
[Ref.: #20218] |
Pseudomonas aeruginosa strain RPATPSA4 16S ribosomal RNA gene, partial sequence |
JQ303330 |
650 |
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287 tax ID |
* |
[Ref.: #20218] |
Streptomyces aureofaciens strain DSM 40127 clone ITS 16S-23S ribosomal RNA intergenic spacer, partial sequence |
AY296975 |
238 |
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1894 tax ID |
* |
[Ref.: #20218] |
Streptomyces aureofaciens strain DSM 40127 clone ITS18 16S-23S ribosomal RNA intergenic spacer, partial sequence |
AY296976 |
238 |
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1894 tax ID |
* |
[Ref.: #20218] |
Streptomyces aureofaciens strain DSM 40127 clone ITS19 16S-23S ribosomal RNA intergenic spacer, partial sequence |
AY296977 |
236 |
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1894 tax ID |
* |
[Ref.: #20218] |
Streptomyces aureofaciens strain DSM 40127 clone ITS20 16S-23S ribosomal RNA intergenic spacer, partial sequence |
AY296978 |
239 |
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1894 tax ID |
* |
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Availability in culture collections External links
[Ref.: #9330] |
Culture collection no. |
DSM 40127, ATCC 10762, ATCC 23884, CBS 664.68, IFO 12594, IFO 12843, ISP 5127, JCM 4008, KACC 20180, NBRC 12594, NBRC 12843, NRRL 2209, RIA 1129, BCRC 11610, CBS 434.51, CCM 3239, CECT 3206, CGMCC 4.0568, CIP 57.11, HAMBI 1072, HAMBI 313, HUT 6048, HUT 6097, ICMP 499, IFM 1042, IFM 1218, IFM 1219, IFO 3712, IMET 43577, JCM 4624, LMG 5968, MTCC 325, NBIMCC 3424, NBRC 3712, NCAIM B.01479, NCIMB 8234, NRRL B-2183, NRRL B-2657, NRRL B-5404, NRRL ISP-5127, RIA 57, VKM Ac-771, VTT E-042475 |
[Ref.: #84122] |
SI-ID 389336
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Literature: |
Only first 10 entries are displayed. Click here to see all.Click here to see only first 10 entries. |
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Topic |
Title |
Authors |
Journal |
DOI |
Year |
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Metabolism |
Identification and characterization of an indigoidine-like gene for a blue pigment biosynthesis in Streptomyces aureofaciens CCM 3239. |
Novakova R, Odnogova Z, Kutas P, Feckova L, Kormanec J |
Folia Microbiol (Praha) |
10.1007/s12223-010-0018-5 |
2010 |
* |
Enzymology |
Chloroperoxidase from Streptomyces lividans: isolation and characterization of the enzyme and the corresponding gene. |
Bantleon R, Altenbuchner J, van Pee KH |
J Bacteriol |
10.1128/jb.176.8.2339-2347.1994 |
1994 |
* |
Enzymology |
Cloning of a second non-haem bromoperoxidase gene from Streptomyces aureofaciens ATCC 10762: sequence analysis, expression in Streptomyces lividans and enzyme purification. |
Pelletier I, Pfeifer O, Altenbuchner J, van Pee KH |
Microbiology (Reading) |
10.1099/00221287-140-3-509 |
1994 |
* |
Metabolism |
Heterologous production of chlortetracycline in an industrial grade Streptomyces rimosus host. |
Wang X, Yin S, Bai J, Liu Y, Fan K, Wang H, Yuan F, Zhao B, Li Z, Wang W |
Appl Microbiol Biotechnol |
10.1007/s00253-019-09970-1 |
2019 |
* |
Pathogenicity |
Rapid identification of Streptomyces tetracycline producers by MALDI-TOF mass spectrometry. |
Hleba L, Charousova I, Cisarova M, Kovacik A, Kormanec J, Medo J, Bozik M, Javorekova S |
J Environ Sci Health A Tox Hazard Subst Environ Eng |
10.1080/10934529.2018.1474581 |
2018 |
* |
Genetics |
Complete Genome Sequence of Streptomyces lavendulae subsp. lavendulae CCM 3239 (Formerly "Streptomyces aureofaciens CCM 3239"), a Producer of the Angucycline-Type Antibiotic Auricin. |
Busche T, Novakova R, Al'Dilaimi A, Homerova D, Feckova L, Rezuchova B, Mingyar E, Csolleiova D, Bekeova C, Winkler A, Sevcikova B, Kalinowski J, Kormanec J, Ruckert C |
Genome Announc |
10.1128/genomeA.00103-18 |
2018 |
* |
Transcriptome |
Unusual features of the large linear plasmid pSA3239 from Streptomyces aureofaciens CCM 3239. |
Mingyar E, Novakova R, Knirschova R, Feckova L, Bekeova C, Kormanec J |
Gene |
10.1016/j.gene.2017.11.046 |
2017 |
* |
Metabolism |
Characterisation of the genes involved in the biosynthesis and attachment of the aminodeoxysugar D-forosamine in the auricin gene cluster of Streptomyces aureofaciens CCM3239. |
Bekeova C, Rehakova A, Feckova L, Vlckova S, Novakova R, Mingyar E, Kormanec J |
Appl Microbiol Biotechnol |
10.1007/s00253-015-7214-9 |
2015 |
* |
Metabolism |
Utilization of a reporter system based on the blue pigment indigoidine biosynthetic gene bpsA for detection of promoter activity and deletion of genes in Streptomyces. |
Knirschova R, Novakova R, Mingyar E, Bekeova C, Homerova D, Kormanec J |
J Microbiol Methods |
10.1016/j.mimet.2015.03.017 |
2015 |
* |
Metabolism |
A gamma-butyrolactone autoregulator-receptor system involved in the regulation of auricin production in Streptomyces aureofaciens CCM 3239. |
Mingyar E, Feckova L, Novakova R, Bekeova C, Kormanec J |
Appl Microbiol Biotechnol |
10.1007/s00253-014-6057-0 |
2014 |
* |
Metabolism |
Intriguing properties of the angucycline antibiotic auricin and complex regulation of its biosynthesis. |
Kormanec J, Novakova R, Mingyar E, Feckova L |
Appl Microbiol Biotechnol |
10.1007/s00253-013-5373-0 |
2013 |
* |
Metabolism |
A gene determining a new member of the SARP family contributes to transcription of genes for the synthesis of the angucycline polyketide auricin in Streptomyces aureofaciens CCM 3239. |
Rehakova A, Novakova R, Feckova L, Mingyar E, Kormanec J |
FEMS Microbiol Lett |
10.1111/1574-6968.12200 |
2013 |
* |
Metabolism |
The gene cluster aur1 for the angucycline antibiotic auricin is located on a large linear plasmid pSA3239 in Streptomyces aureofaciens CCM 3239. |
Novakova R, Knirschova R, Farkasovsky M, Feckova L, Rehakova A, Mingyar E, Kormanec J |
FEMS Microbiol Lett |
10.1111/1574-6968.12095 |
2013 |
* |
Metabolism |
Strict control of auricin production in Streptomyces aureofaciens CCM 3239 involves a feedback mechanism. |
Kutas P, Feckova L, Rehakova A, Novakova R, Homerova D, Mingyar E, Rezuchova B, Sevcikova B, Kormanec J |
Appl Microbiol Biotechnol |
10.1007/s00253-012-4505-2 |
2012 |
* |
Metabolism |
Genetic manipulation of pathway regulation for overproduction of angucycline-like antibiotic auricin in Streptomyces aureofaciens CCM 3239. |
Novakova R, Rehakova A, Feckova L, Kutas P, Knischova R, Kormanec J |
Folia Microbiol (Praha) |
10.1007/s12223-011-0033-1 |
2011 |
* |
Metabolism |
The role of two SARP family transcriptional regulators in regulation of the auricin gene cluster in Streptomyces aureofaciens CCM 3239. |
Novakova R, Rehakova A, Kutas P, Feckova L, Kormanec J |
Microbiology (Reading) |
10.1099/mic.0.047795-0 |
2011 |
* |
Metabolism |
The role of the TetR-family transcriptional regulator Aur1R in negative regulation of the auricin gene cluster in Streptomyces aureofaciens CCM 3239. |
Novakova R, Kutas P, Feckova L, Kormanec J |
Microbiology (Reading) |
10.1099/mic.0.037895-0 |
2010 |
* |
Metabolism |
Characterization of a regulatory gene essential for the production of the angucycline-like polyketide antibiotic auricin in Streptomyces aureofaciens CCM 3239. |
Novakova R, Homerova D, Feckova L, Kormanec J |
Microbiology (Reading) |
10.1099/mic.0.28019-0 |
2005 |
* |
Metabolism |
PHB synthase from Streptomyces aureofaciens NRRL 2209. |
Ramachander TV, Rawal SK |
FEMS Microbiol Lett |
10.1016/j.femsle.2004.10.034 |
2005 |
* |
Enzymology |
Cloning and characterization of a new polyketide synthase gene cluster in Streptomyces aureofaciens CCM 3239. |
Novakova R, Bistakova J, Homerova D, Rezuchova B, Feckova L, Kormanec J |
DNA Seq |
10.1080/10425170410001710556 |
2004 |
* |
Metabolism |
Characterization of the polyketide spore pigment cluster whiESa in Streptomyces aureofaciens CCM3239. |
Novakova R, Bistakova J, Kormanec J |
Arch Microbiol |
10.1007/s00203-004-0720-2 |
2004 |
* |
Metabolism |
Poly(3-hydroxybutyrate) (PHB) synthesis by recombinant Escherichia coli harbouring Streptomyces aureofaciens PHB biosynthesis genes: effect of various carbon and nitrogen sources. |
Mahishi LH, Tripathi G, Rawal SK |
Microbiol Res |
10.1078/0944-5013-00161 |
2003 |
* |
Metabolism |
Synthesis of PHB by recombinant E. coli harboring an approximately 5 kb genomic DNA fragment from Streptomyces aureofaciens NRRL 2209. |
Ramachander TV, Rohini D, Belhekar A, Rawal SK |
Int J Biol Macromol |
10.1016/s0141-8130(02)00068-5 |
2002 |
* |
Enzymology |
Cloning and characterization of a polyketide synthase gene cluster involved in biosynthesis of a proposed angucycline-like polyketide auricin in Streptomyces aureofaciens CCM 3239. |
Novakova R, Bistakova J, Homerova D, Rezuchova B, Kormanec J |
Gene |
10.1016/s0378-1119(02)00889-2 |
2002 |
* |
Genetics |
Use of degenerate primers and touchdown PCR to amplify a halogenase gene fragment from Streptomyces venezuelae ISP5230. |
Piraee M, Vining LC |
J Ind Microbiol Biotechnol |
10.1038/sj.jim.7000263 |
2002 |
* |
Enzymology |
Purification, crystallization and preliminary X-ray analysis of two crystal forms of ribonuclease Sa3. |
Hlinkova V, Urbanikova L, Krajcikova D, Sevcik J |
Acta Crystallogr D Biol Crystallogr |
10.1107/s0907444901003456 |
2001 |
* |
Metabolism |
Iron deficiency-induced tetracycline production in submerged cultures by Streptomyces aureofaciens. |
Bechet M, Blondeau R |
J Appl Microbiol |
10.1046/j.1365-2672.1998.00428.x |
1998 |
* |
Enzymology |
The metal-ion-free oxidoreductase from Streptomyces aureofaciens has an alpha/beta hydrolase fold. |
Hecht HJ, Sobek H, Haag T, Pfeifer O, van Pee KH |
Nat Struct Biol |
10.1038/nsb0894-532 |
1994 |
* |
Enzymology |
Cloning and sequencing of the gene encoding a ribonuclease from Streptomyces aureofaciens CCM3239. |
Homerova D, Hollanderova Z, Kormanec J, Sevcik J |
Gene |
10.1016/0378-1119(92)90082-z |
1992 |
* |
Enzymology |
Molecular cloning and sequencing of a non-haem bromoperoxidase gene from Streptomyces aureofaciens ATCC 10762. |
Pfeifer O, Pelletier I, Altenbuchner J, van Pee KH |
J Gen Microbiol |
10.1099/00221287-138-6-1123 |
1992 |
* |
Enzymology |
Purification, characterization and comparison of two non-haem bromoperoxidases from Streptomyces aureofaciens ATCC 10762. |
Weng M, Pfeifer O, Krauss S, Lingens F, van Pee KH |
J Gen Microbiol |
10.1099/00221287-137-11-2539 |
1991 |
* |
Enzymology |
Crystallization and preliminary X-ray data of bromoperoxidase from Streptomyces aureofaciens ATCC 10762. |
Sobek H, Haag T, Pfeifer O, Schomburg D, Lingens F, van Pee KH |
J Mol Biol |
10.1016/0022-2836(91)80199-5 |
1991 |
* |
Metabolism |
Properties of apyrase and inorganic pyrophosphatase in Streptomyces aureofaciens. |
Curdova E, Jechova V, Hostalek Z |
Folia Microbiol (Praha) |
10.1007/BF02877394 |
1982 |
* |
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A Structural Analysis of the Angucycline-Like Antibiotic Auricin from Streptomyces lavendulae Subsp. Lavendulae CCM 3239 Revealed Its High Similarity to Griseusins. |
Matulova M, Feckova L, Novakova R, Mingyar E, Csolleiova D, Zduriencikova M, Sedlak J, Patoprsty V, Sasinkova V, Uhliarikova I, Sevcikova B, Rezuchova B, Homerova D, Kormanec J |
Antibiotics (Basel) |
10.3390/antibiotics8030102 |
2019 |
* |
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- References
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#9330 |
Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ;
DSM 40127
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#37599 |
; Curators of the CIP;
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#66794 |
Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg:
BRENDA, the ELIXIR core data resource in 2021: new developments and updates.
Nucleic Acids Res. 49:
D498 - D508
2020 (
DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
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#67770 |
Japan Collection of Microorganism (JCM) ; Curators of the JCM;
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#68368 |
Automatically annotated from API 20E .
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#68379 |
Automatically annotated from API Coryne .
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#68382 |
Automatically annotated from API zym .
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#84122 |
Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.:
StrainInfo: A central database for resolving microbial strain identifiers
.
(
DOI 10.60712/SI-ID389336.1 )
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#116569 |
Collection of Institut Pasteur ; Curators of the CIP;
CIP 57.11
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- * These data were automatically processed and therefore are not curated
Change proposal
Successfully sent
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