Name: Streptomyces achromogenes Z-4-1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 14881

Type strain:

Species: Streptomyces achromogenes

Strain Designation: Z-4-1

Culture col. no.: DSM 40028, ATCC 12767, ATCC 19719, CBS 458.68, IFO 12735, ISP 5028, JCM 4121, NBRC 12735, RIA 1000, BCRC 11618, CECT 3074, CGMCC 4.1075, IAM 12360, IFM 1173, IFO 16791, IMET 43080, IMSNU 20130, JCM 4561, KCTC 1740, MTCC 931, NBRC 16791, NRRL B-2120, PCM 2365, RIA 756, VKM Ac-1258

Strain history: KCC S-0121 <-- Y. Okami Z-4-1 (NIHJ 213).

NCBI tax ID(s): 67255 (species)

SI-ID 389313

ATCC 12767, ATCC 19719, CCM 3226, IFO 12735, JCM 4121, CCRC 11618, IMET 43080, JCM 4561, NRRL B-2120, VKM Ac-1258, CECT 3074, KCTC 1740, IFO 16791, NBRC 12735, NBRC 16791, HAMBI 1002, BCRC 11618, IAM 12360, KACC 20001, NBIMCC 1607, CGMCC 4.1075, CBS 458.68, DSM 40028

Other strains from Streptomyces achromogenes

S. achromogenes ST027565(HKI),

Section

Streptomyces achromogenes Z-4-1 is a mesophilic bacterium that builds an aerial mycelium and produces antibiotic compounds.

antibiotic compound production
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces achromogenes**
	Full Scientific Name (LPSN)	Streptomyces achromogenes Okami and Umezawa 1953 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

[Ref.: #19389]	Colony color	Maize yellow
[Ref.: #19389]	Incubation period	10-14 days
[Ref.: #19389]	Cultivation medium used	ISP 2

[Ref.: #19389]	Colony color	Beige
[Ref.: #19389]	Incubation period	10-14 days
[Ref.: #19389]	Cultivation medium used	ISP 3

[Ref.: #19389]	Colony color	Beige
[Ref.: #19389]	Incubation period	10-14 days
[Ref.: #19389]	Cultivation medium used	ISP 4

[Ref.: #19389]	Colony color	Beige
[Ref.: #19389]	Incubation period	10-14 days
[Ref.: #19389]	Cultivation medium used	ISP 5

[Ref.: #19389]	Colony color	Brown beige
[Ref.: #19389]	Incubation period	10-14 days
[Ref.: #19389]	Cultivation medium used	ISP 6

[Ref.: #19389]	Colony color	Beige
[Ref.: #19389]	Incubation period	10-14 days
[Ref.: #19389]	Cultivation medium used	ISP 7

[Ref.: #19389]	Multicellular complex forming ability	yes
[Ref.: #19389]	Multicellular complex name	Aerial Mycelium
[Ref.: #19389]	Multicellular complex color	Cream
[Ref.: #19389]	Medium Name (multicellularity)	ISP 2

[Ref.: #19389]	Multicellular complex forming ability	yes
[Ref.: #19389]	Multicellular complex name	Aerial Mycelium
[Ref.: #19389]	Multicellular complex color	Light grey
[Ref.: #19389]	Medium Name (multicellularity)	ISP 3

[Ref.: #19389]	Multicellular complex forming ability	yes
[Ref.: #19389]	Multicellular complex name	Aerial Mycelium
[Ref.: #19389]	Multicellular complex color	Cream
[Ref.: #19389]	Medium Name (multicellularity)	ISP 4

[Ref.: #19389]	Multicellular complex forming ability	no
[Ref.: #19389]	Medium Name (multicellularity)	ISP 5

[Ref.: #19389]	Multicellular complex forming ability	no
[Ref.: #19389]	Medium Name (multicellularity)	ISP 6

[Ref.: #19389]	Multicellular complex forming ability	yes
[Ref.: #19389]	Multicellular complex name	Aerial Mycelium
[Ref.: #19389]	Multicellular complex color	Cream
[Ref.: #19389]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

[Ref.: #9227]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #9227]

Culture medium growth

[Ref.: #9227]

Culture medium link

Medium recipe at MediaDive

[Ref.: #9227]

Culture medium composition

expand / minimize

[Ref.: #19389]

Culture medium

ISP 2

[Ref.: #19389]

Culture medium growth

[Ref.: #19389]

Culture medium composition

expand / minimize

[Ref.: #19389]

Culture medium

ISP 3

[Ref.: #19389]

Culture medium growth

[Ref.: #19389]

Culture medium composition

expand / minimize

[Ref.: #19389]

Culture medium

ISP 4

[Ref.: #19389]

Culture medium growth

[Ref.: #19389]

Culture medium composition

expand / minimize

[Ref.: #19389]

Culture medium

ISP 5

[Ref.: #19389]

Culture medium growth

[Ref.: #19389]

Culture medium composition

expand / minimize

[Ref.: #19389]

Culture medium

ISP 6

[Ref.: #19389]

Culture medium growth

[Ref.: #19389]

Culture medium composition

expand / minimize

[Ref.: #19389]

Culture medium

ISP 7

[Ref.: #19389]

Culture medium growth

[Ref.: #19389]

Culture medium composition

expand / minimize

[Ref.: #9227]

Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

[Ref.: #9227]

Culture medium growth

[Ref.: #9227]

Culture medium link

Medium recipe at MediaDive

[Ref.: #9227]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #9227]	growth	37 °C
[Ref.: #19389]	optimum	28 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #9227]	Temperature range	mesophilic
[Ref.: #19389]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #9227]	Name of produced compound	achromoviromycin
[Ref.: #9227]	Name of produced compound	restriction endonuclease SacI
[Ref.: #9227]	Name of produced compound	sarcidin
[Ref.: #20216]	Name of produced compound	Achromoviromycin
[Ref.: #20216]	Name of produced compound	Sarcidin
[Ref.: #20216]	Name of produced compound	Endonuclease SacI
[Ref.: #20216]	Name of produced compound	Endonuclease SacII
[Ref.: #20216]	Name of produced compound	Endonuclease SacIII

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #19389]	arabinose ChEBI	+
[Ref.: #68368]	arginine ChEBI	+	hydrolysis	* from API 20E
[Ref.: #19389]	cellulose ChEBI	+
[Ref.: #68368]	citrate ChEBI	+	assimilation	* from API 20E
[Ref.: #19389]	fructose ChEBI	+
[Ref.: #68368]	gelatin ChEBI	+	hydrolysis	* from API 20E
[Ref.: #19389]	glucose ChEBI	+
[Ref.: #68368]	lysine ChEBI	+	degradation	* from API 20E
[Ref.: #19389]	mannitol ChEBI	+
[Ref.: #19389]	myo-inositol ChEBI	-
[Ref.: #68368]	ornithine ChEBI	+	degradation	* from API 20E
[Ref.: #19389]	raffinose ChEBI	-
[Ref.: #19389]	rhamnose ChEBI	+
[Ref.: #19389]	sucrose ChEBI	-
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	+	hydrolysis	* from API 20E
[Ref.: #19389]	xylose ChEBI	-
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #67770]	achromoviromycin	yes
[Ref.: #67770]	sarcidin	yes
[Ref.: #68368]	acetoin ChEBI	yes	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	yes	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	+		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	+	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68368]	arginine dihydrolase	+	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	+	3.2.1.23	* from API 20E
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68368]	gelatinase	+		* from API 20E
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68368]	lysine decarboxylase	+	4.1.1.18	* from API 20E
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68368]	ornithine decarboxylase	+	4.1.1.17	* from API 20E
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	+	3.5.1.5	* from API 20E
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #19389]	255	+	+	+	+	+	+	+	-	-	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #19389]	343	not determinedn.d.	+	-	+	-	+	+	-	+	+	+	+	-	-	-	+	-	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9227]	Sample type/isolated from	garden soil

[Ref.: #67770]	Sample type/isolated from	Garden soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	Suginami-ku, Tokyo
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Engineered	#Agriculture	#Garden

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #9227]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #19389]	Biosafety level	1	Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces achromogenes strain ATCC 12767 16S ribosomal RNA gene, partial sequence	DQ012961	577	ENA	67255 tax ID	*
[Ref.: #20218]	Streptomyces achromogenes subsp. achromogenes gene for 16S ribosomal RNA, partial sequence, strain: JCM 4561	D44232	120	ENA	67256 tax ID	*
[Ref.: #20218]	Streptomyces achromogenes subsp. achromogenes gene for 16S rRNA, partial sequence, strain: NBRC 12735	AB184109	1460	ENA	67256 tax ID	*
[Ref.: #20218]	Streptomyces achromogenes subsp. achromogenes strain NRRL B-2120 16S ribosomal RNA gene, partial sequence	EF654091	1395	ENA	67256 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces achromogenes subsp. achromogenes NRRL B-2120	GCA_000720835	contig	GenBank	67256 tax ID

[Ref.: #67770]

GC-content

72.5 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces achromogenes subsp. achromogenes NRRL B-2120 NCBI: GCA_000720835.1
[Ref.: #69480]	motile	no	94.641	no
[Ref.: #69480]	flagellated	no	98.532	no
[Ref.: #69480]	gram-positive	yes	91.358	no
[Ref.: #69480]	anaerobic	no	99.306	no
[Ref.: #69480]	aerobic	yes	94.516	no
[Ref.: #69480]	halophile	no	93.682	no
[Ref.: #69480]	spore-forming	yes	96.993	no
[Ref.: #69480]	thermophile	no	97.749	yes
[Ref.: #69480]	glucose-util	yes	89.821	yes
[Ref.: #69480]	glucose-ferment	no	90.542	no

Availability in culture collections External links

[Ref.: #9227]

Culture collection no.

DSM 40028, ATCC 12767, ATCC 19719, CBS 458.68, IFO 12735, ISP 5028, JCM 4121, NBRC 12735, RIA 1000, BCRC 11618, CECT 3074, CGMCC 4.1075, IAM 12360, IFM 1173, IFO 16791, IMET 43080, IMSNU 20130, JCM 4561, KCTC 1740, MTCC 931, NBRC 16791, NRRL B-2120, PCM 2365, RIA 756, VKM Ac-1258

[Ref.: #83990]

SI-ID 389313

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces phaeolivaceus sp. nov. and Streptomyces broussonetiae sp. nov., isolated from the leaves and rhizosphere soil of Broussonetia papyrifera.	Mo P, Liu J, Zhao Y, Xu Z	Int J Syst Evol Microbiol	10.1099/ijsem.0.004556	2020	*
Enzymology	[Isolation and purification of restriction endonuclease SacI from Streptomyces achromogenes ATCC 12767].	Zhuravleva LI, Oreshkin EN, Bezborodov AM	Prikl Biokhim Mikrobiol		1987	*

References

#9227

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40028

#19389

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20216

Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) Curators of the HKI: Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#68382

Automatically annotated from API zym .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#83990

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID389313.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Streptomyces achromogenes subsp. achromogenes in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Streptomyces achromogenes subsp. achromogenes NRRL B-2120

Change proposal

Change proposal