Name: Mammaliicoccus stepanovicii 196
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 14680

Type strain:

Species: Mammaliicoccus stepanovicii

Strain Designation: 196

Culture col. no.: DSM 26319, CCM 7717, PCM 2693, CCUG 72271, CIP 111012

Strain history: CIP <- 2016, DSMZ <- CCM <- T. Hauschild: strain 196

NCBI tax ID(s): 643214 (species)

SI-ID 400845

DSM 26319

Section

Mammaliicoccus stepanovicii 196 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from bank vole Clethrionomys glareolus.

coccus-shaped
Gram-positive
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Staphylococcaceae*
	Genus	*Mammaliicoccus*
	Species	**Mammaliicoccus stepanovicii**
	Full Scientific Name (LPSN)	Mammaliicoccus stepanovicii (Hauschild et al. 2012) Madhaiyan et al. 2020

Synonym

Staphylococcus stepanovicii

Information on morphological and physiological properties Morphology

[Ref.: #123310]	Gram stain	positive

[Ref.: #123310]	Cell shape	coccus-shaped

[Ref.: #123310]	Motility	no

[Ref.: #18190]	Type of hemolysis	gamma
[Ref.: #18190]	Incubation period	1-2 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #41642]

Culture medium

MEDIUM 45 - for Columbia agar with sheep blood

[Ref.: #41642]

Culture medium growth

[Ref.: #41642]

Culture medium composition

expand / minimize

[Ref.: #18190]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #18190]

Culture medium growth

[Ref.: #18190]

Culture medium link

Medium recipe at MediaDive

[Ref.: #18190]

Culture medium composition

expand / minimize

[Ref.: #18190]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #18190]

Culture medium growth

[Ref.: #18190]

Culture medium link

Medium recipe at MediaDive

[Ref.: #18190]

Culture medium composition

expand / minimize

[Ref.: #123310]

Culture medium

CIP Medium 45

[Ref.: #123310]

Culture medium growth

[Ref.: #123310]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #18190]	growth	37 °C
[Ref.: #41642]	growth	37 °C
[Ref.: #63800]	growth	37 °C

[Ref.: #18190]	Temperature range	mesophilic
[Ref.: #41642]	Temperature range	mesophilic
[Ref.: #63800]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #63800]

Oxygen tolerance

aerobe

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68375]	arabinose ChEBI	-	fermentation	* from API ID32STA
[Ref.: #68375]	arginine ChEBI	-	hydrolysis	* from API ID32STA
[Ref.: #68375]	cellobiose ChEBI	-	fermentation	* from API ID32STA
[Ref.: #68375]	D-fructose ChEBI	+	fermentation	* from API ID32STA
[Ref.: #68375]	D-glucose ChEBI	+	fermentation	* from API ID32STA
[Ref.: #68375]	D-mannitol ChEBI	+	fermentation	* from API ID32STA
[Ref.: #68375]	esculin ChEBI	-	hydrolysis	* from API ID32STA
[Ref.: #68375]	lactose ChEBI	-	fermentation	* from API ID32STA
[Ref.: #68375]	maltose ChEBI	-	fermentation	* from API ID32STA
[Ref.: #68375]	N-acetylglucosamine ChEBI	-	fermentation	* from API ID32STA
[Ref.: #68375]	nitrate ChEBI	+	reduction	* from API ID32STA
[Ref.: #68375]	ornithine ChEBI	-	degradation	* from API ID32STA
[Ref.: #68375]	raffinose ChEBI	-	fermentation	* from API ID32STA
[Ref.: #68375]	sucrose ChEBI	-	fermentation	* from API ID32STA
[Ref.: #68375]	trehalose ChEBI	+	fermentation	* from API ID32STA
[Ref.: #68375]	turanose ChEBI	-	fermentation	* from API ID32STA
[Ref.: #68375]	urea ChEBI	+	hydrolysis	* from API ID32STA
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68375]		acetoin ChEBI	no	* from API ID32STA

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #68375]		acetoin ChEBI	-	* from API ID32STA

	Enzyme	Enzyme activity	EC number
[Ref.: #68375]	alkaline phosphatase	+	3.1.3.1	* from API ID32STA
[Ref.: #68375]	arginine dihydrolase	-	3.5.3.6	* from API ID32STA
[Ref.: #68375]	beta-galactosidase	-	3.2.1.23	* from API ID32STA
[Ref.: #68375]	beta-glucosidase	-	3.2.1.21	* from API ID32STA
[Ref.: #68375]	beta-glucuronidase	-	3.2.1.31	* from API ID32STA
[Ref.: #18190]	catalase	+	1.11.1.6
[Ref.: #18190]	cytochrome-c oxidase	+	1.9.3.1
[Ref.: #68375]	L-arginine arylamidase	-		* from API ID32STA
[Ref.: #68375]	ornithine decarboxylase	-	4.1.1.17	* from API ID32STA
[Ref.: #68375]	pyrrolidonyl arylamidase	+	3.4.19.3	* from API ID32STA
[Ref.: #68375]	urease	+	3.5.1.5	* from API ID32STA
	Only first 10 entries are displayed. Click here to see all.

API® ID32STA:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	Ornithine decarboxylaseODC	Esculin hydrolysisESC	Fermentation of D-glucoseGLU	Fermentation of D-fructoseFRU	Fermentation of D-mannoseMNE	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of trehaloseTRE	Fermentation of D-mannitolMAN	Fermentation of raffinoseRAF	Fermentation of D-riboseRIB	Fermentation of cellobioseCEL	Reduction of nitrateNIT	Acetoin production (Voges Proskauer test)VP	beta-Galactosidasebeta GAL	L-arginine arylamidaseArgA	Alkaline phosphatasePAL	Pyrrolidonyl arylamidasePyrA	Novobiocin resistanceNOVO	Fermentation of sucroseSAC	Fermentation of N-acetyl-glucosamineNAG	Fermentation of turanoseTUR	Fermentation of arabinoseARA	beta-Glucuronidasebeta GUR
[Ref.: #18190]	6184	+	-	-	-	+	+	-	-	-	+	+	-	+	-	+	-	-	-	+	+	-	-	-	-	-	-
[Ref.: #18190]	6120	+	-	-	-	+	+	+	-	-	+	+	-	-	-	+	-	-	-	+	+	+	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #18190]	Sample type/isolated from	bank vole Clethrionomys glareolus
[Ref.: #18190]	Host species	Clethrionomys glareolus
[Ref.: #18190]	Geographic location (country and/or sea, region)	north-eastern part
[Ref.: #18190]	Country	Poland
[Ref.: #18190]	Country ISO 3 Code	POL
[Ref.: #18190]	Continent	Europe

[Ref.: #63800]	Sample type/isolated from	Bank vole
[Ref.: #63800]	Sampling date	2009
[Ref.: #63800]	Country	Poland
[Ref.: #63800]	Country ISO 3 Code	POL
[Ref.: #63800]	Continent	Europe

[Ref.: #123310]	Sample type/isolated from	Bank vole, Clethrionomys glareolus
[Ref.: #123310]	Geographic location (country and/or sea, region)	North eastern part of Poland
[Ref.: #123310]	Country	Poland
[Ref.: #123310]	Country ISO 3 Code	POL
[Ref.: #123310]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host

#Mammals

#Muridae (Mouse/Rat)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence GQ222244 (>99% sequence identity) for Staphylococcus from Microbeatlas

Aquatic Samples	251
Soil Samples	269
Animal Samples	6869
Plant Samples	116
Total Samples	7505

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18190]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #123310]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #18190]	Staphylococcus stepanovicii strain 196 16S ribosomal RNA gene, partial sequence	GQ222244	1545	ENA	643214 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Mammaliicoccus stepanovicii CCM 7717	GCA_014635785	scaffold	GenBank	643214 tax ID	*
[Ref.: #66792]	Mammaliicoccus stepanovicii DSM 26319	GCA_002902525	scaffold	GenBank	643214 tax ID	*
[Ref.: #66792]	Staphylococcus stepanovicii strain CCM 7717	643214.11	wgs	PATRIC	643214 tax ID	*
[Ref.: #66792]	Staphylococcus stepanovicii strain DSM 26319	643214.10	wgs	PATRIC	643214 tax ID	*
[Ref.: #66792]	Mammaliicoccus stepanovicii DSM 26319	2917429644	draft	JGI IMG/M	643214 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Mammaliicoccus stepanovicii CCM 7717 NCBI: GCA_014635785.1
[Ref.: #69480]	flagellated	no	93.013	no
[Ref.: #69480]	gram-positive	yes	93.112	no
[Ref.: #69480]	anaerobic	no	99.595	no
[Ref.: #69480]	aerobic	yes	93.765	yes
[Ref.: #69480]	halophile	yes	93.856	no
[Ref.: #69480]	spore-forming	no	89.163	no
[Ref.: #69480]	thermophile	no	99.635	no
[Ref.: #69480]	glucose-util	yes	88.648	no
[Ref.: #69480]	motile	no	87.911	no
[Ref.: #69480]	glucose-ferment	yes	80.421	yes

Availability in culture collections External links

[Ref.: #18190]

Culture collection no.

DSM 26319, CCM 7717, PCM 2693, CCUG 72271, CIP 111012

[Ref.: #83806]

SI-ID 400845

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Staphylococcus stepanovicii sp. nov., a novel novobiocin-resistant oxidase-positive staphylococcal species isolated from wild small mammals.	Hauschild T, Stepanovic S, Zakrzewska-Czerwinska J	Syst Appl Microbiol	10.1016/j.syapm.2010.03.004	2010	*

References

#18190

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26319

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#41642 ; Curators of the CIP;
#63800 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 72271

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68375

Automatically annotated from API ID32STA .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#83806

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID400845.1 )

#123310 Collection of Institut Pasteur ; Curators of the CIP; CIP 111012
* These data were automatically processed and therefore are not curated

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Mammaliicoccus stepanovicii CCM 7717

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